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RIKEN BioResource Center - Japan Collection of Microorganisms
JCM Mail News (2016.06.14)
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RIKEN BioResource Center - Japan Collection of Microorganisms (JCM)
is pleased to update you with the latest information.
======= Contents ====================================================
- Special topic: A sub-collection of halophilic archaea at JCM
- Report: Exhibition of JCM at the RIKEN BRC Open Campus 2016
- Newly cataloged strains (2015.12.01 - 2016.05.31).
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Special topic: A sub-collection of halophilic archaea at JCM
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Halophilic archaea represented by the class Halobacteria are aerobic
or facultatively anaerobic organisms requiring NaCl for growth,
generally, more than 1.5 M concentration. These archaea thrive in
hypersaline habitats including salterns, salt lakes and salt mines:
meanwhile several strains were isolated from non-hypersaline
environments, such as low-ionic terrestrial hot spring water and sea
water in an aquarium. Not more than 15 genera were known by the end
of the 1990s; however, entering the 21 century, several research
groups have started intensive exploration studies and the results led
us to understand there is great diversity among the class Halobacteia.
Actually, as of 12 May, 2016, the class encompasses three orders,
four families, 51 genera and more than 210 species. During the time,
JCM have operated as one of the major depository facilities, thanks
to the cooperation of the depositors.
The following is a list of halophilic achaeal strains available from
JCM at present.
https://jcm.brc.riken.jp/en/wp-content/uploads/files/List_of_haloarchaea.xls
On the other hand, halophilic archaea draw a lot of research and
application interests. Accordingly, JCM has been distributing a
number of halophilic archaeal strains to the communities. The
followings are just a few examples of the recent outcomes by users:
Becker, E. A. et al. Phylogenetic driven sequencing of extremely
halophilic archaea reveals strategies for static dynamic
osmo-response. PLoS Genet. 10(11): e1004784.
doi: 10.1371/journal.pgen.1004784
King G. M. Carbon monoxide as a metabolic energy source for
extremely halophilic microbes: implications for microbial activity
in Mars regolith. Proc. Natl. Acad. Sci. USA 112,4465-4470.
doi: 10.1073/pnas.1424989112
Takashi Itoh, Ph. D.
Curator of Archaea and bacterial Extremophiles
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Report: Exhibition by JCM at the RIKEN BRC Open Campus 2016
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For foreign researchers outside Japan, it may not be easy to attend
the RIKEN BRC open campus, unless he/she happens to be in Japan,
particularly around Tsukuba-area, during the time of the open campus.
Even so, it may be worth of knowing what is going on there, if you
are interested in community outreach activities by scientists.
The RIKEN BRC makes a point of holding the open campus every year to
show citizens that the center holds and develops a variety of
bio-resources, including experimental animals and plants, cell-lines,
gene materials and microbes that are currently or potentially used in
the research and industrial communities. Here is a report of the JCM
booth at the RIKEN BRC open campus, held on 22-23 April, 2016...Read more
https://jcm.brc.riken.jp/en/wp-content/uploads/files/OPEN_CAMPUS_JCM_2016.pdf
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- Newly cataloged strains (2015.12.01 - 2016.05.31).
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[Bacteria]
Acidithiobacillus ferriphilus JCM 30830 Type strain
Actinoplanes lichenis JCM 30485 Type strain
Advenella alkanexedens JCM 30465 Type strain
Aeromicrobium camelliae JCM 30592 Type strain
Aeromonas hydrophila JCM 6132
Aeromonas hydrophila JCM 6133
Ahrensia marina JCM 30117 Type strain
Alcaligenes pakistanensis JCM 30216 Type strain
Algoriella xinjiangensis JCM 16590 Type strain
Allohumibacter endophyticus JCM 19371 Type strain
Alteromonas naphthalenivorans JCM 17741 Type strain
Aminobacterium thunnarium JCM 19320 Type strain
Amphritea spongicola JCM 16668 Type strain
Amycolatopsis stemonae JCM 30050 Type strain
Anaerosalibacter bizertensis JCM 17239 Type strain
"Aneurinibacillus humi" JCM 19865 Proposed type strain
Arcobacter pacificus JCM 17857 Type strain
Arenimonas aesturaii JCM 31129 Type strain
Athalassotoga saccharophila JCM 19762 Type strain
Aureibacillus halotolerans JCM 30067 Type strain
Aureimonas glaciistagni JCM 30183 Type strain
Azospirillum agricola JCM 30827 Type strain
Azospirillum soli JCM 18820 Type strain
Bacillus ectoiniformans JCM 30397 Type strain
Bacillus formosensis JCM 18448 Type strain
Bacillus malikii JCM 30192 Type strain
Bacillus piscicola JCM 19598 Type strain
Bacillus sp. JCM 15709
Bacillus stamsii JCM 30025 Type strain
"Bergeyella cardium" JCM 30115 Proposed type strain
Bifidobacterium bifidum JCM 19484
Bifidobacterium eulemuris JCM 30801 Type strain
Bifidobacterium hapali JCM 30799 Type strain
Bifidobacterium hapali JCM 30800
Bifidobacterium longum JCM 19476
Bifidobacterium myosotis JCM 30796 Type strain
Bifidobacterium myosotis JCM 30797
Bifidobacterium tissieri JCM 30798 Type strain
Bifidobacterium tissieri JCM 30803
Bizionia arctica JCM 30333 Type strain
Bizionia fulviae JCM 30417 Type strain
Bordetella muralis JCM 30931 Type strain
Bordetella muralis JCM 30932
Bordetella muralis JCM 30933
Bordetella tumbae JCM 30934 Type strain
Bordetella tumulicola JCM 30935 Type strain
Bordetella tumulicola JCM 30936
Bordetella tumulicola JCM 30937
Bordetella tumulicola JCM 30938
Bordetella tumulicola JCM 30939
Bordetella tumulicola JCM 30940
Brevirhabdus pacifica JCM 19489 Type strain
Brevundimonas albigilva JCM 30385 Type strain
Burkholderia cepacia JCM 5509
Burkholderia cepacia JCM 5510
Burkholderia cepacia JCM 5511
Burkholderia ginsengiterrae JCM 19888 Type strain
Burkholderia jirisanensis JCM 19985 Type strain
Burkholderia panaciterrae JCM 19889 Type strain
Burkholderia sp. JCM 30421
Caproiciproducens galactitolivorans JCM 30532 Type strain
Carnobacterium iners JCM 31128 Type strain
Caulobacter flavus JCM 30763 Type strain
Celeribacter manganoxidans JCM 19384 Type strain
Celeribacter naphthalenivorans JCM 30679 Type strain
Chryseobacterium echinoideorum JCM 30470 Type strain
Chryseobacterium profundimaris JCM 19801 Type strain
"Citrobacter bitternis" JCM 30009 Proposed type strain
"Clostridium kogasensis" JCM 18719 Proposed type strain
Clostridium ventriculi JCM 31280
Clostridium ventriculi JCM 31281
Clostridium xylanovorans JCM 31057 Type strain
"Cohnella humi" JCM 18164 Proposed type strain
Cohnella saccharovorans JCM 19227 Type strain
Comamonas piscis JCM 30718 Type strain
Confluentimicrobium naphthalenivorans JCM 30828 Type strain
Croceitalea litorea JCM 19531 Type strain
Deferrisoma palaeochoriense JCM 30394 Type strain
"Defluviitalea phaphyphila" JCM 30481 Proposed type strain
Deinococcus actinosclerus JCM 30700 Type strain
Deinococcus actinosclerus JCM 30701
Deinococcus actinosclerus JCM 30702
Desulfurella amilsii JCM 30680 Type strain
Dethiosulfatarculus sandiegensis JCM 30857 Type strain
Diaphorobacter JCM 30411 Type strain
polyhydroxybutyrativorans
Dissulfurimicrobium hydrothermale JCM 19990 Type strain
Duganella ginsengisoli JCM 30745 Type strain
Empedobacter brevis JCM 6810
Empedobacter brevis JCM 6811
Escherichia coli JCM 5263
Escherichia coli JCM 6127
Filimonas endophytica JCM 19844 Type strain
Filobacterium rodentium JCM 19453 Type strain
Flavisolibacter ginsenosidimutans JCM 18197 Type strain
"Flavisolibacter swuensis" JCM 19974 Proposed type strain
Flavitalea soli JCM 19937 Type strain
Flavobacterium buctense JCM 30750 Type strain
"Flavobacterium jejuensis" JCM 30735 Proposed type strain
Flavobacterium seoulense JCM 30145 Type strain
Flexilinea flocculi JCM 30897 Type strain
Fusibacter bizertensis JCM 19376 Type strain
Geoalkalibacter subterraneus JCM 30610 Type strain
Georgenia subflava JCM 19765 Type strain
Halocynthiibacter arcticus JCM 30530 Type strain
Haloimpatiens lingqiaonensis JCM 19210 Type strain
Halomonas garicola JCM 30151 Type strain
Halomonas urumqiensis JCM 30202 Type strain
Halopeptonella vilamensis JCM 16388 Type strain
Humibacter ginsengisoli JCM 30080 Type strain
Humibacter ginsengiterrae JCM 30079 Type strain
Hydrogenophaga luteola JCM 30433 Type strain
Hymenobacter mucosus JCM 19647 Type strain
Hypnocyclicus thermotrophus JCM 30901 Type strain
Hyunsoonleella udonensis JCM 30600 Type strain
Ichthyobacterium seriolicida JCM 18228 Type strain
Inquilinus ginsengisoli JCM 14825 Type strain
"Jejuia marina" JCM 30601 Proposed type strain
Kushneria aurantia JCM 15469 Type strain
Kushneria indalinina JCM 19369 Type strain
Labrys soli JCM 19895 Type strain
Lactococcus lactis subsp. tructae JCM 31125 Type strain
"Legionella thermalis" JCM 30970 Proposed type strain
"Lentibacillus kimchii" JCM 30234 Proposed type strain
Leucobacter holotrichiae JCM 30245 Type strain
Leucobacter zeae JCM 18686 Type strain
Lunatimonas lonarensis JCM 18822 Type strain
Luteimonas notoginsengisoli JCM 30329 Type strain
Luteimonas pelagia JCM 18792 Type strain
Luteimonas terrae JCM 30122 Type strain
Luteipulveratus halotolerans JCM 30660 Type strain
Lysinibacillus fusiformis JCM 31033 Type strain
Lysobacter aestuarii JCM 31130 Type strain
Lysobacter hankyongensis JCM 18204 Type strain
Lysobacter sediminicola JCM 18205 Type strain
Lysobacter terricola JCM 30862 Type strain
"Lysobacter tyrosinelyticus" JCM 30320 Proposed type strain
Maribacter lutimaris JCM 31154 Type strain
Mariniluteicoccus endophyticus JCM 30097 Type strain
Mariniluteicoccus endophyticus JCM 30098
Marinobacter halophilus JCM 30472 Type strain
Marinobacterium profundum JCM 30410 Type strain
Maritimibacter lacisalsi JCM 30555 Type strain
Membranicola marinus JCM 18886 Type strain
Mesorhizobium acaciae JCM 30534 Type strain
Methyloterrigena soli JCM 30821 Type strain
Micromonospora fluostatini JCM 30529 Type strain
Micromonospora nickelidurans JCM 30559 Type strain
Moraxella osloensis JCM 17842 Type strain
Mucilaginibacter ginsengisoli JCM 30759 Type strain
Muricauda pacifica JCM 17861 Type strain
Mycoavidus cysteinexigens JCM 30646 Type strain
Nesterenkonia aurantiaca JCM 19723 Type strain
Niastella gongjuensis JCM 19941 Type strain
Nibribacter sp. JCM 19445
"Nitratireductor soli" JCM 30640 Proposed type strain
Nitrincola alkalisediminis JCM 19317 Type strain
Nitrincola alkalisediminis JCM 19318
Niveibacterium umoris JCM 18716 Type strain
Nocardia rayongensis JCM 19832 Type strain
Nocardioides ginkgobilobae JCM 30556 Type strain
Novosphingobium oryzae JCM 30537 Type strain
Ochrobactrum sp. JCM 6134
"Paenibacillus alba" JCM 18165 Proposed type strain
"Paenibacillus ginsengiterrae" JCM 19887 Proposed type strain
"Paenibacillus humi" JCM 18166 Proposed type strain
"Paenibacillus insulae" JCM 17278 Proposed type strain
Paenibacillus kyungheensis JCM 19886 Type strain
Paenibacillus medicaginis JCM 18446 Type strain
"Paracoccus aquimaris" JCM 19892 Proposed type strain
Paracoccus laeviglucosivorans JCM 30587 Type strain
"Paralcaligenes ginsengisoli" JCM 30746 Proposed type strain
"Phaeobacter marinintestinus" JCM 19926 Proposed type strain
Phaeobacterium nitratireducens JCM 19219 Type strain
Plantactinospora sonchi JCM 30345 Type strain
Polymorphobacter fuscus JCM 19740 Type strain
Pontibacter amylolyticus JCM 19653 Type strain
Pseudoclavibacter endophyticus JCM 30633 Type strain
Pseudoclavibacter terrae JCM 30298 Type strain
Pseudofulvibacter gastropodicola JCM 30369 Type strain
Pseudofulvibacter marinus JCM 30826 Type strain
Pseudomonas aeruginosa JCM 5517
Pseudomonas stutzeri JCM 30558
Pseudooceanicola antarcticus JCM 19802 Type strain
"Pseudooceanicola flagellatus" JCM 19803 Proposed type strain
Pseudorhodobacter psychrotolerans JCM 30764 Type strain
Psychroflexus planctonicus JCM 30616 Type strain
Psychroflexus salis JCM 30615 Type strain
Qipengyuania sediminis JCM 30182 Type strain
Rhabdobacter roseus JCM 30685 Type strain
Rhizobium marinum JCM 30155 Type strain
Rhizobium mesosinicum JCM 13233
Rhodanobacter aciditrophus JCM 30774 Type strain
Roseomonas wooponensis JCM 19527 Type strain
"Roseovarius algicolus" JCM 30823 Proposed type strain
Saccharothrix stipae JCM 30560 Type strain
Sedimentibacter acidaminivorans JCM 17293 Type strain
Sediminivirga luteola JCM 19771 Type strain
"Seohaeicola westpacificensis" JCM 18883 Proposed type strain
Shewanella sp. JCM 14208
Shimia sagamensis JCM 30583 Type strain
Simplicispira piscis JCM 19291 Type strain
Sphingobacterium mucilaginosum JCM 30424 Type strain
Sphingobium barthaii JCM 30309 Type strain
Sphingomonas arantia JCM 19855 Type strain
"Sphingomonas panacis" JCM 30806 Proposed type strain
"Sphingomonas panaciterrae" JCM 30807 Proposed type strain
"Sphingosinicella ginsenosidimutans" JCM 18201 Proposed type strain
Spirosoma fluviale JCM 30659 Type strain
"Spirosoma montaniterrae" JCM 18492 Proposed type strain
"Spirosoma pulveris" JCM 30688 Proposed type strain
Sporohalobacter salinus JCM 19279 Type strain
Staphylococcus aureus JCM 5676
Staphylococcus aureus JCM 5677
Staphylococcus aureus JCM 5678
Staphylococcus aureus JCM 5679
Staphylococcus aureus JCM 5680
Staphylococcus lentus JCM 2426 Type strain
Stenotrophomonas maltophilia JCM 30959
Stenotrophomonas maltophilia JCM 30960
Stenotrophomonas tumulicola JCM 30961 Type strain
Stenotrophomonas tumulicola JCM 30962
Stenotrophomonas tumulicola JCM 30963
Stenotrophomonas tumulicola JCM 30965
Stenotrophomonas tumulicola JCM 30966
Stenotrophomonas tumulicola JCM 30967
Stenotrophomonas tumulicola JCM 30968
Stenotrophomonas tumulicola JCM 30969
Streptobacillus ratti JCM 31098 Type strain
Streptococcus alactolyticus JCM 31116 Type strain
Streptococcus criceti JCM 31114 Type strain
Streptococcus cristatus JCM 31122 Type strain
Streptococcus downei JCM 31115 Type strain
Streptococcus gallolyticus JCM 31120
subsp. gallolyticus
Streptomyces actinomycinicus JCM 30864 Type strain
Streptomyces daqingensis JCM 30057 Type strain
"Streptomyces siamensis" JCM 18409 Proposed type strain
"Streptomyces similanensis" JCM 18410 Proposed type strain
Streptomyces sp. JCM 30950
"Streptomyces vayuensis" JCM 13217
Subsaxibacter arcticus JCM 30334 Type strain
Tagaea marina JCM 18659 Type strain
Tetragenococcus halophilus JCM 31127 Type strain
subsp. flandriensis
Tetragenococcus osmophilus JCM 31126 Type strain
Thalassobius abyssi JCM 30900 Type strain
Thalassocola ureilytica JCM 30682 Type strain
Thermanaeromonas burensis JCM 18718 Type strain
Thermocrinis jamiesonii JCM 19133 Type strain
Thermostilla marina JCM 19992 Type strain
Tianweitania sediminis JCM 30358 Type strain
Tsukamurella hongkongensis JCM 30715 Type strain
Tsukamurella hongkongensis JCM 30716
Tsukamurella sinensis JCM 30714 Type strain
Tumebacillus luteolus JCM 19866 Type strain
Tumebacillus luteolus JCM 19867
Undibacterium aquatile JCM 30323 Type strain
Virgibacillus kapii JCM 30071 Type strain
Weissella jogaejeotgali JCM 30580 Type strain
Winogradskyella eckloniae JCM 18703 Type strain
Xanthomarina gelatinilytica JCM 18821 Type strain
[Archaea]
Acidianus sp. JCM 30227
Cuniculiplasma divulgatum JCM 30641
Cuniculiplasma divulgatum JCM 30642 Type strain
Halarchaeum grantii JCM 18422
Halarchaeum grantii JCM 19585 Type strain
Halarchaeum grantii JCM 19586
Haloarcula sp. JCM 30477
Haloparvum sedimenti JCM 30891
Haloparvum sedimenti JCM 30892
Haloquadratum sp. JCM 15065
Halorientalis brevis JCM 18366 Type strain
Halorubrum chaoviator JCM 17875 Type strain
Halorubrum yunnanense JCM 30665 Type strain
Halorubrum yunnanense JCM 30666
Halosimplex litoreum JCM 18647 Type strain
Methanococcoides sp. JCM 30226
Methanolobus chelungpuianus JCM 15159 Type strain
Methanolobus sp. JCM 30225
Methanosarcina flavescens JCM 30921 Type strain
[Fungi]
Aquastroma magniostiolata JCM 19429 ex-holotype
Aquilomyces rebunensis JCM 19427 ex-holotype
Ascoidea hylecoeti JCM 7604 Type strain
Aspergillus nidulans JCM 19075
Clypeoloculus akitaensis JCM 19424 ex-holotype
Clypeoloculus hirosakiensis JCM 19425 ex-holotype
Clypeoloculus microsporus JCM 19426 ex-holotype
Clypeoloculus towadaensis JCM 19428 ex-holotype
Cunninghamella echinulata JCM 22488
Cunninghamella elegans JCM 22489
Dictyosporium digitatum JCM 19404
Dictyosporium digitatum JCM 19405
Dictyosporium hughesii JCM 19407
Dictyosporium pseudomusae JCM 19408
Dictyosporium pseudomusae JCM 19409 ex-holotype
Dictyosporium sp. JCM 19403
Dictyosporium sp. JCM 19406
Dictyosporium tetrasporum JCM 19410
Fuscostagonospora sasae JCM 13104 ex-holotype
Geotrichum candidum JCM 31318
Globisporangium macrosporum JCM 30516
Gregarithecium curvisporum JCM 19411 ex-holotype
Helicascus aquaticus JCM 19423
Helicascus thalassioideus JCM 17526
Helminthosporium massarinum JCM 13094
Helminthosporium massarinum JCM 13095 ex-holotype
Keissleriella breviasca JCM 19413
Keissleriella breviasca JCM 19414
Keissleriella breviasca JCM 19415 ex-holotype
Keissleriella culmifida JCM 19416
Keissleriella culmifida JCM 19417
Keissleriella quadriseptata JCM 19418 ex-holotype
Keissleriella sp. JCM 19420
Keissleriella yonaguniensis JCM 19419 ex-holotype
Lentithecium pseudoclioninum JCM 19421
Lentithecium pseudoclioninum JCM 19422 ex-holotype
Lophiotrema neohysterioides JCM 17673
Lophiotrema vagabundum JCM 17674
Lophiotrema vagabundum JCM 17675
Lyophyllum decastes JCM 30590
Lyophyllum shimeji JCM 30591
Magnicamarosporium iriomotense JCM 19402 ex-holotype
Mucor circinelloides JCM 22475
Mucor circinelloides JCM 22476
Mucor circinelloides JCM 22477
Mucor circinelloides JCM 22478
Mucor circinelloides JCM 22479
Mucor circinelloides JCM 22480
Mucor circinelloides JCM 22483
Mucor circinelloides JCM 22484
Mucor mucedo JCM 23020
Mucor racemosus f. racemosus JCM 22481
Muscodor oryzae JCM 18231 ex-holotype
Neurospora crassa JCM 19066
Neurospora crassa JCM 19067
Neurospora crassa JCM 19069
Periconia homothallica JCM 13100 ex-holotype
Periconia pseudodigitata JCM 13164
Periconia pseudodigitata JCM 13165
Periconia pseudodigitata JCM 13166 ex-holotype
Pilasporangium apinafurcum JCM 30513 ex-holotype
Pilasporangium apinafurcum JCM 30514
Pseudocoleophoma polygonicola JCM 19412 ex-holotype
Pseudotrichia mutabilis JCM 17824
Pythium aquatile JCM 30499
Rhizodermea veluwensis JCM 30689
Rhodosporidium toruloides JCM 24501
Rhodotorula slooffiae JCM 10954 Type strain
Sarimanas shirakamiense JCM 17825
Schizophyllum commune JCM 22674
Stagonospora perfecta JCM 13099
Sulcatispora berchemiae JCM 13101 ex-holotype
Syncephalastrum racemosum JCM 22491
Trematosphaeria pertusa JCM 19430
Trichosporon heliocopridis JCM 30786 Type strain
Yamadazyma kitorensis JCM 31004
Yamadazyma kitorensis JCM 31005 Type strain
Yamadazyma olivae JCM 30999
Yamadazyma olivae JCM 31000
Yamadazyma olivae JCM 31001
Yamadazyma olivae JCM 31002
Yamadazyma olivae JCM 31003
Yarrowia sp. JCM 30694
Yarrowia sp. JCM 30695
Yarrowia sp. JCM 30696
Zygoascus biomembranicola JCM 31007 Type strain
Zygoascus polysorbophila JCM 31006
Zygosporium mycophilum JCM 17691
_____________________________________________________________________
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Microbe Division / Japan Collection of Microorganisms
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_____________________________________________________________________
2016.06.14
