JCM On-line Catalogue of Strains

 Scientific name 1
 Genus:
 Species:
    Example 1: Genus = Micromonospora
Example 2: Species = aurantiaca
Example 3: Genus = %monospo, Species = %ensis
(Prefix match search at each box. Inside match or suffix match search can be performed by using "%" as a wild-card character like Example 3. Case-insensitive)

 Scientific name 2
 Scientific name:
    Example 1: Scientific name = Micromonospora chalcea
Example 2: Scientific name = Lactobacillus paracasei subsp. paracasei
(Prefix match search. Inside match or suffix match search can be performed by using "%" as a wild-card character. Case-insensitive)

 JCM accession number
   JCM:
    Example: JCM = 12345 (Exact match search)

 Accession number of other culture collection
 Acronym:
 Number:
    Example 1: Acronym = DSM, Number = 43067
Example 2: Acronym = VKM, Number = Ac-636
(Exact match search at both boxes. Case-sensitive)

 Keyword
   Keyword:
    Example: Keyword = genome sequence
(Inside match search. Case-insensitive)

 Culture medium
 JCM Medium No.:
 Name of Medium:
    Example 1: JCM Medium No. = 58
Example 2: Name of Medium = malt extract
(Exact match search for "JCM Medium No." and inside match search for "Name of Medium". Case-insensitive)

List of Publications by JCM Members (since 1993)

Last update: Mar. 14, 2019

2018 2017 2016 2015 2014 2013 2012 2011
2010 2009 2008 2007 2006 2005 2004 2003
2002 2001 2000 1999 1998 1997 1996 1995
1994 1993 Return to the JCM Top Page

 

 

2019

Kuncharoen, N., Kudo, T., Ohkuma, M., and Tanasupawat, S. 2019. Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton. Antonie van Leeuwenhoek 112: 253-262. PMID: 30167912.

Murakami, T., Onouchi, S., Igai, K., Ohkuma, M., and Hongoh, Y. 2019. Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis. FEMS. Microbiol. Ecol. 95: fiy238. PMID: 30561598.

Naradasu, D., Miran, W., Sakamoto, M., and Okamoto, A. 2019. Isolation and characterization of human gut bacteria capable of extracellular electron transport by electrochemical techniques. Front. Microbiol. 9: 3267. PMID: 30697198.

Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Tohno, M. 2019. Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994. Int. J. Syst. Evol. Microbiol. 69: 417-421. PMID: 30540240.

Utami, Y. D., Kuwahara, H., Igai, K., Murakami, T., Sugaya, K., Morikawa, T., Nagura, Y., Yuki, M., Deevong, P., Inoue, T., Kihara, K., Lo, N., Yamada, A., Ohkuma, M., and Hongoh, Y. 2019. Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut. ISME J. 13: 455-467. PMID: 30287885.

Shintani, M., Ohkuma, M., and Kimbara, K. 2019. High-resolution comparison of bacterial conjugation frequencies. J. Vis. Exp. 143: e57812. PMID: 30688297.

Ogata, Y., Suda, W., Ikeyama, N., Hattori, M., Ohkuma, M., and Sakamoto, M. 2019. Complete genome sequence of Phascolarctobacterium faecium JCM 30894, a succinate-utilizing bacterium isolated from human feces. Microbiol. Resour. Announc. 8: e01487-18. PMID: 30687834.

2017 2016 2015 2014 2013 2012 2011 2010
2009 2008 2007 2006 2005 2004 2003 2002
2001 2000 1999 1998 1997 1996 1995 1994
1993 Return to the JCM Top Page

 

 

2018

Shen, X.-X., Opulente, D. A., Kominek, J., Zhou, X., Steenwyk, J. L., Buh, K. V., Haase, M. A. B., Wisecaver, J. H., Wang, M., Doering, D. T., Boudouris, J. T., Schneider, R. M., Langdon, Q. K., Ohkuma, M., Endoh, R., Takashima, M., Manabe, R.-I., Čadež, N., Libkind, D., Rosa, C. A., DeVirgilio, J., Hulfachor, A. B., Groenewald, M., Kurtzman, C. P., Hittinger, C. T., and Rokas, A. 2018. Tempo and mode of genome evolution in the budding yeast subphylum. Cell 175: 1533-1545. PMID: 30415838.

Yanagiya, K., Maejima, Y., Nakata, H., Tokuda, M., Moriuchi, R., Dohra, H., Inoue, K., Ohkuma, M., Kimbara, K., and Shintani, M. 2018. Novel self-transmissible and broad-host-range plasmids exogenously captured from anaerobic granules or cow manure. Front. Microbiol. 9: 2602. PMID: 30459733.

Noda, S., Aihara, C., Yuki, M., and Ohkuma, M. 2018. Draft genome sequence of Lactococcus sp. strain NtB2 (JCM 32569), isolated from the gut of the higher termite Nasutitermes takasagoensis. Genome Announc. 6: e00445-18. PMID: 29903810.

Sakamoto, M., Ikeyama, N., Yuki, M., and Ohkuma, M. 2018. Draft genome sequence of Lawsonibacter asaccharolyticus JCM 32166T, a butyrate-producing bacterium, isolated from human feces. Genome Announc. 6: e00563-18. PMID: 29930067.

Kinjo, Y,. Bourguignon, T., Tong, K. J., Kuwahara, H., Lim, S. J., Yoon, K. B., Shigenobu, S., Park, Y, C., Nalepa, C, A., Hongoh, Y., Ohkuma, M., Lo, N., and Tokuda, G. 2018. Parallel and gradual genome erosion in the Blattabacterium endosymbionts of Mastotermes darwiniensis and Cryptocercus wood roaches. Genome Biol. Evol. 10: 1622–1630. PMID: 29860278.

Wu, L., McCluskey, K., Desmeth, P., Liu, S., Sugawara, H., Yin, Y., Ohkuma, M., Itoh, T., Kim, C. Y., Lee, J.-S., Zhou, Y., Kawasaki, H., Hazbón, M. H., Robert, V., Boekhout, T., Lima, N., Evtushenko, L., Boundy-Mill, K., Bunk, B., Moore, E. R. B., Eurwilaichitr, L., Ingsriswang, S., Shah, H., Yao, S., Jin, T., Huang, J., Shi, W., Sun, Q., Fan, G., Li, W., Li, X., Kurtböke, I., and Ma, J. 2018. The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species. Gigascience 7: giy026. PMID: 29718202.

Yuki, M., Sakamoto, M., Nishimura, Y., and Ohkuma, M. 2018. Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus. Int. J. Syst. Evol. Microbiol. 68: 596-601. PMID: 29300157.

Sakamoto, M., Iino, T., Hamada, M., and Ohkuma, M. 2018. Parolsenella catena gen. nov., sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 68: 1165-1172. PMID: 29458507.

Penkhrue, W., Sujarit, K., Kudo, T., Ohkuma, M., Masaki, K., Aizawa, T., Pathom-Aree, W., Khanongnuch, C., and Lumyong, S. 2018. Amycolatopsis oliviviridis sp. nov., a novel polylactic acid-bioplastic-degrading actinomycete isolated from paddy soil. Int. J. Syst. Evol. Microbiol. 68: 1448-1454. PMID: 29517482.

Chiba, M., Itabashi, T., Hirai, K., Sakamoto, M., Ohkuma, M., Ishige, T., and Kawasaki, S. 2018. Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti. Int. J. Syst. Evol. Microbiol. 68: 1484-1489. PMID: 29543150.

Sakamoto, M., Iino, T., Yuki, M., and Ohkuma, M. 2018. Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces. Int. J. Syst. Evol. Microbiol. 68: 2074-2081. PMID: 29745868.

Sujarit, K., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S. 2018. Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium. Int. J. Syst. Evol. Microbiol. 68: 3333-3339. PMID: 30168790.

Tanizawa, Y., Tada, I., Kobayashi, H., Endo, A., Maeno, S., Toyoda, A., Arita, M., Nakamura, Y., Sakamoto, M., Ohkuma, M., and Tohno, M. 2018. Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses. Int. J. Syst. Evol. Microbiol. 68: 3512-3517. PMID: 30226464.

Noda, S., Sakamoto, M., Aihara, C., Yuki, M., Katsuhara, M., and Ohkuma, M. 2018. Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis. Int. J. Syst. Evol. Microbiol. 68: 3832-3836. PMID: 30320546.

Sakamoto, M., Ikeyama, N., Kunihiro, T., Iino, T., Yuki, M., and Ohkuma, M. 2018. Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 68: 3942-3950. PMID: 30394865.

Thawai, C., Kanchanasin, P., Ohkuma, M., Kudo, T., and Tanasupawat, S. 2018. Identification and antimicrobial activity of Micromonospora strains from Thai peat swamp forest soils. J. Appl. Pharm. Sci. 8: 119-125. DOI: 10.7324/JAPS.2018.8417.

Noda, S., Shimizu, D., Yuki, M., Kitade, O., and Ohkuma, M. 2018. Host-symbiont cospeciation of termite-gut cellulolytic protists of the genera Teranympha and Eucomonympha and their Treponema endosymbionts. Microbes Environ. 33: 26-33. PMID: 29367472.

Utami, Y, D., Kuwahara, H., Murakami, T., Morikawa, T., Sugaya, K., Kihara, K., Yuki, M., Lo, N., Deevong, P., Hasin, S., Boonriam, W., Inoue, T., Yamada, A., Ohkuma, M., and Hongoh, Y. 2018. Phylogenetic diversity and single-cell genome analysis of “Melainabacteria“, a non-photosynthetic cyanobacterial group, in the termite gut. Microbes Environ. 33: 50-57. PMID: 29415909.

Kato, S., Yuki, M., Itoh, T., and Ohkuma, M. 2018. Complete genome sequence of Ferriphaselus amnicola strain OYT1, a neutrophilic, stalk forming, iron-oxidizing bacterium. Microbiol. Resour. Announc. 7: e00911-18. DOI: 10.1128/MRA.00911-18.

Sakamoto, M., Ikeyama, N., Yuki, M., and Ohkuma, M. 2018. Draft genome sequence of Faecalimonas umbilicata JCM 30896T, an acetate-producing bacterium isolated from human feces. Microbiol. Resour. Announc. 7: e01091-18. DOI: 10.1128/MRA.01091-18.

Hazbón, M. H., Rigouts, L., Schito, M., Ezewudo, M., Kudo, T., Itoh, T., Ohkuma, M., Kiss, K., Wu, L., Ma, J., Hamada, M., Strong, M., Salfinger, M., Daley, C. L., Nick, J. A., Lee, J.-S., Rastogi, N., Couvin, D., Hurtado-Ortiz, R., Bizet, C., Suresh, A., Rodwell, T., Albertini, A., Lacourciere, K. A., Deheer-Graham, A., Alexander, S., Russell, J. E., Bradford, R., and Riojas, M. A. 2018. Mycobacterial biomaterials and resources for researchers. Pathog. Dis. 76: fty042. PMID: 29846561.

Tanimura, A., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S., Ogawa, J., Shima, J., and Takashima, M. 2018. Lipid production via simultaneous conversion of glucose and xylose by a novel yeast, Cystobasidium iriomotense. PLOS ONE 13: e0202164. PMID: 30208038.

Suzuki, S., Endoh, R., Manabe, R., Ohkuma, M., and Hirakawa, Y. 2018. Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca. Sci. Rep. 8: 940. PMID: 29343788.

Hashimoto, A., Hirayama, K., Takahashi, H., Matsumura, M., Okada, G., Chen, C. Y., Huang, J. W., Kakishima M., Ono, T., and Tanaka, K. 2018. Resolving the Lophiostoma bipolare complex: Generic delimitations within Lophiostomataceae. Stud. Mycol. 90: 161-189. PMID: 29632417.

Takashima, M., Sriswasdi, S., Manabe, R.-I., Ohkuma, M., Sugita, T., and Iwasaki, W. 2018. A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved ‘natural’ hybrid genomes. Yeast 35: 99-111. PMID: 29027707.

2016 2015 2014 2013 2012 2011 2010
2009 2008 2007 2006 2005 2004 2003
2002 2001 2000 1999 1998 1997 1996
1995 1994 1993 Top of the page

 

 

2017

Tanizawa, Y., Kobayashi, H., Kaminuma, E., Sakamoto, M., Ohkuma, M., Nakamura, Y., Arita, M., and Tohno, M. 2017. Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri. Biosci. Microbiota Food Health 36: 129-134. PMID: 28748134.

Katahira, S., Muramoto, N., Moriya, S., Nagura, R., Tada, N., Yasutani, N., Ohkuma, M., Onishi, T., and Tokuhiro, K. 2017. Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae. Biotechnol. Biofuels 10: 203. PMID: 28852424.

Izawa, K., Kuwahara, H., Sugaya, K., Lo, N., Ohkuma, M., and Hongoh, Y. 2017. Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites. Environ. Microbiol. Rep. 9: 411-418. PMID: 28556617.

Tashiro, Y., Hasegawa, Y., Shintani, M., Takaki, K., Ohkuma, M., Kimbara, K., and Futamata, H. 2017. Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells. Front. Microbiol. 8: 571. PMID: 28439261.

Tsuchida, S., Maruyama, F., Ogura, Y., Toyoda, A., Hayashi, T., Okuma, M., and Ushida, K. 2017. Genomic characteristics of Bifidobacterium thermacidophilum pig isolates and wild boar isolates reveal the unique presence of a putative mobile genetic element with tetW for pig farm isolates. Front. Microbiol. 8: 1540. PMID: 28861055.

Okada, N., Tanimura, A., Hirakawa, H., Takashima, M., Ogawa, J., and Shima, J. 2017. Draft genome sequences of the xylose-fermenting yeast Scheffersomyces shehatae NBRC 1983T and a thermotolerant isolate of S. shehatae ATY839 (JCM 18690). Genome Announc. 5: 00347-17. PMID: 28522710.

Uzuhashi, S., Endoh, R., Manabe, R., and Ohkuma, M. 2017. Draft genome sequences of the oomycete Pilasporangium apinafurcum strains JCM 30513 and JCM 30514, formerly classified as Pythium apinafurcum. Genome Announc. 5: e00899-17. PMID: 28860253.

Yuki, M., Sakamoto, M., Kuwahara, H., Hongoh, Y., and Ohkuma, M. 2017. Draft genome sequence of Lactococcus sp. strain Rs-Y01, isolated from the gut of the lower termite Reticulitermes speratus. Genome Announc. 5: e00999-17. PMID: 28935745.

Lee, C. G., Yuki, M., Iida, T., Nakaho, K., and Ohkuma, M. 2017. Draft genome sequence of Tepidibacter mesophilus strain JCM 16806T isolated from soil polluted by crude oil in China. Genome Announc. 5: e01308-17. PMID: 29167249.

Jutakanoke, R., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., and Akaracharanya, A. 2017. Allodekkera sacchari gen. nov., sp. nov., a yeast species in the Saccharomycetales isolated from a sugar factory. Int. J. Syst. Evol. Microbiol. 67: 250-255. PMID: 27902246.

Sakamoto, M., Iino, T., and Ohkuma, M. 2017. Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov. Int. J. Syst. Evol. Microbiol. 67: 1219-1227. PMID: 28556772.

Sripreechasak, P., Phongsopitanun, W., Supong, K., Pittayakhajonwut, P., Kudo, T., Ohkuma, M., and Tanasupawat, S. 2017. Nonomuraea rhodomycinica sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. 67: 1683-1687. PMID: 28155814.

Minegishi, H., Enomoto, S., Echigo, A., Shimane, Y., Kondo, Y., Inoma, A., Kamekura, M., Takai, K., Itoh, T., Ohkuma, M., Ihara, K., Takahashi-Ando, N., Fukushima, Y., Ishii, S., Yoshida, Y., and Usami, R. 2017. Salinarchaeum chitinilyticum sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 67: 2274-2278. PMID: 28671534.

Khunnamwong, P., Ribeiro, J. R. A., Garcia, K. M., Hagler, A. N., Takashima, M., Ohkuma, M., Endoh, R., Sugita, T., Jindamorakot, S., and Limtong, S. 2017. Occultifur plantarum f.a., sp. nov., a novel cystobasidiomycetous yeast species. Int. J. Syst. Evol. Microbiol. 67: 2628-2633. PMID: 28771126.

Sujarit, K., Sujada, N., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S. 2017. Pseudonocardia thailandensis sp. nov., an actinomycete isolated from a subterranean termite nest. Int. J. Syst. Evol. Microbiol. 67: 2773-2778. PMID: 28853680.

Tohno, M., Tanizawa, Y., Irisawa, T., Masuda, T., Sakamoto, M., Arita, M., Ohkuma, M., and Kobayashi, H. 2017. Lactobacillus silagincola sp. nov. and Lactobacillus pentosiphilus sp. nov., isolated from silage. Int. J. Syst. Evol. Microbiol. 67: 3639-3644. PMID: 28879844.

Kobayashi, H., Nakasato, T., Sakamoto, M., Ohtani, Y., Terada, F., Sakai, K., Ohkuma, M., and Tohno, M. 2017. Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage. Int. J. Syst. Evol. Microbiol. 67: 4974-4978. PMID: 29034861.

Kuwahara, H., Yuki, M., Izawa, K., Ohkuma, M., and Hongoh, Y. 2017. Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut. ISME J. 11: 766-776. PMID: 27801909.

Tsuchida, S., Murata, K., Ohkuma, M., and Ushida, K. 2017. Isolation of Streptococcus gallolyticus with very high degradability of condensed tannins from feces of the wild Japanese rock ptarmigans on Mt. Tateyama. J. Gen. Appl. Microbiol. 63: 195-198. PMID: 28392540

Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S. 2017. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. 1537: 139-152. PMID: 27924592.

Lee, C, G., Iida, T., Inoue, Y., Muramoto, Y., Watanabe, H., Hakaho, K., and Ohkuma, M. 2017. Prokaryotic communities at different depths between soils with and without tomato bacterial wilt but pathogen-present in a single greenhouse. Microbes Environ. 32: 118-124. PMID: 28502968.

Haruta, S., Iino, T., Ohkuma, M., Suzuki, K., and Igarashi, Y. 2017. Ca2+ in hybridization solutions for fluorescence in situ hybridization facilitates the detection of Enterobacteriaceae. Microbes Environ. 32: 142-146. PMID: 28515389.

Lee, C. G., Iida, T., Uwagaki, Y., Otani, Y., Nakaho, K., and Ohkuma, M. 2017. Comparison of prokaryotic and eukaryotic communities in soil samples with and without tomato bacterial wilt collected from different fields. Microbes Environ. 32: 376–385. PMID: 29187707.

Hagen, F., Lumbsch, H. T., Arsic Arsenijevic, V., Badali, H., Bertout, S., Billmyre, R. B., Bragulat, M. R., Cabañes, F. J., Carbia, M., Chakrabarti, A., Chaturvedi, S., Chaturvedi, V., Chen, M., Chowdhary, A., Colom, M. F., Cornely, O. A., Crous, P. W., Cuétara, M. S., Diaz, M. R., Espinel-Ingroff, A., Fakhim, H., Falk, R., Fang, W., Herkert, P. F., Ferrer Rodríguez, C., Fraser, J. A., Gené, J., Guarro, J., Idnurm, A., Illnait-Zaragozi, M. T., Khan, Z., Khayhan, K., Kolecka, A., Kurtzman, C. P., Lagrou, K., Liao, W., Linares, C., Meis, J. F., Nielsen, K., Nyazika, T. K., Pan, W., Pekmezovic, M., Polacheck, I., Posteraro, B., de Queiroz Telles Filho, F., Romeo, O., Sánchez, M., Sampaio, A., Sanguinetti, M., Sriburee, P., Sugita, T., Taj-Aldeen, S. J., Takashima, M., Taylor, J. W., Theelen, B., Tomazin, R., Verweij, P. E., Wahyuningsih, R., Wang, P., and Boekhout, T. 2017. Importance of resolving fungal nomenclature: the case of multiple pathogenic species in the Cryptococcus genus. mSphere 2: e00238-17. PMID: 28875175.

Wu, L., Sun, Q., Desmeth, P., Sugawara, H., Xu, Z., McCluskey, K., Smith, D., Alexander, V., Lima, N., Ohkuma, M., Robert, V., Zhou, Y., Li, J., Fan, G., Ingsriswang, S., Ozerskaya, S., and Ma, J. 2017. World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. Nucleic Acids Res. 45: 611-618. PMID: 28053166.

Nakazawa, S., Haramiishi, A., Fukuda, K., Kanayama, Y., Watanabe, T., Yuki, M., Ohkuma, M., Takeda, K., Kimbara, K., and Shintani, M. 2017. Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions. PLOS ONE 12: e0186248. PMID: 29023575.

Péter, G., Takashima, M., and Čadež, N. 2017. Yeast habitats: different but global, In: Buzzini, P., Lachance, M.-A., and Yurkov, A. (eds.), Yeasts in Natural Ecosystems: Ecology, pp. 39-71, Springer, Cham. DOI: 10.1007/978-3-319-61575-2_2.

2015 2014 2013 2012 2011 2010 2009 2008 2007
2006 2005 2004 2003 2002 2001 2000 1999 1998
1997 1996 1995 1994 1993 Top of the page

 

 

2016

Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S., Ogawa, J., and Shima, J. 2016. Lipid production through simultaneous utilization of glucose, xylose, and L-arabinose by Pseudozyma hubeiensis: a comparative screening study. AMB Express 6: 58. PMID: 27566647.

Ohkuma, M. 2016. The outset of another nitrogenase. Environ. Microbiol. 18: 4. PMID: 26249540.

Cho, O., Ichikawa, T., Kurakado, S., Takashima, M., Manabe, R., Ohkuma, M., and Sugita, T. 2016. Draft genome sequence of the causative antigen of summer-type hypersensitivity pneumonitis, Trichosporon domesticum JCM 9580. Genome Announc. 4: e00651-16. PMID: 27389271.

Masuya, H., Manabe, R., Ohkuma, M., and Endoh, R. 2016. Draft genome sequence of Raffaelea quercivora JCM 11526, a Japanese oak wilt pathogen associated with the platypodid beetle, Platypus quercivorus. Genome Announc. 4: e00755-16. PMID: 27469944.

Izawa, K., Kuwahara, H., Kihara, K., Yuki, M., Lo, N., Itoh, T., Ohkuma, M., and Hongoh, Y. 2016. Comparison of intracellular “Ca. Endomicrobium trichonymphae” genomovars illuminates the requirement and decay of defense systems against foreign DNA. Genome Biol. Evol. 8: 3099-3107. PMID: 27635050.

Sriswasdi, S., Takashima, M., Manabe, R., Ohkuma, M., Sugita, T., and Iwasaki W. 2016. Global deceleration of gene evolution following recent genome hybridizations in fungi. Genome Res. 26: 1081-1090. PMID: 27440871.

Ike, F., Sakamoto, M., Ohkuma, M., Kajita, A., Matsushita, S., and Kokubo, T. 2016. Filobacterium rodentium gen. nov., sp. nov., a member of Filobacteriaceae fam. nov. within the phylum Bacteroidetes; includes a microaerobic filamentous bacterium isolated from specimens from diseased rodent respiratory tracts. Int. J. Syst. Evol. Microbiol. 66: 150-157. PMID: 26476525.

Tanasupawat, S., Phongsopitanun, W., Suwanborirux, K., Ohkuma, M., and Kudo, T. 2016. Streptomyces actinomycinicus sp. nov., isolated from soil of a peat swamp forest. Int. J. Syst. Evol. Microbiol. 66: 290-295. PMID: 26510888.

Phongsopitanun, W., Matsumoto, A., Inahashi, Y., Kudo, T., Mori, M., Shiomi, K., Takahashi, Y., and Tanasupawat, S. 2016. Actinoplanes lichenis sp. nov., isolated from lichen. Int. J. Syst. Evol. Microbiol. 66: 468-473. PMID: 26552374.

Itoh, T., Onishi, M., Kato, S., Iino, T., Sakamoto, M., Kudo, T., Takashina, T., and Ohkuma, M. 2016. Athalassotoga saccharophila gen. nov., sp. nov., isolated from an acidic terrestrial hot spring, and proposal of Mesoaciditogales ord. nov. and Mesoaciditogaceae fam. nov. in the phylum Thermotogae. Int. J. Syst. Evol. Microbiol. 66: 1045-1051. PMID: 26651491.

Daroonpunt, R., Itoh, T., Kudo, T., Ohkuma, M., and Tanasupawat, S. 2016. Bacillus piscicola sp. nov., isolated from Thai fish sauce (Nam-pla). Int. J. Syst. Evol. Microbiol. 66: 1151-1155. PMID: 26674773.

Kunthiphun ,S., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat ,S., and Akaracharanya, A. 2016. Trichosporon heliocopridis sp. nov., a ureasenegative basidiomycetous yeast associated with dung beetles (Heliocopris bucephalus Fabricius). Int. J. Syst. Evol. Microbiol. 66: 1180-1186. PMID: 26674642.

Irisawa, T., Saputra, S., Kitahara, M., Sakamoto, M., Sulistiani, S., Yulineri, T., Dinoto, A., and Ohkuma, M. 2016. Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken. Int. J. Syst. Evol. Microbiol. 66: 1431-1437. PMID: 26769263.

Daroonpunt, R., Tanasupawat, S., Kudo, T., Ohkuma, M., and Itoh, T. 2016. Virgibacillus kapii sp. nov., isolated from Thai shrimp paste (Ka-pi). Int. J. Syst. Evol. Microbiol. 66: 1832-1837. PMID: 26869011.

Tanasupawat, S., Phongsopitanun, W., Suwanborirux, K., Ohkuma, M., and Kudo, T. 2016. Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil. Int. J. Syst. Evol. Microbiol. 66: 1950-1955. PMID: 26873179.

Phongsopitanun, W., Kudo, T., Ohkuma, M., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S. 2016. Micromonospora sediminis sp. nov., isolated from mangrove sediment. Int. J. Syst. Evol. Microbiol. 66: 3235-3240. PMID: 27220280.

Songsumanus, A., Kudo, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S. 2016. Actinomadura montaniterrae sp. nov., isolated from mountain soil. Int. J. Syst. Evol. Microbiol. 66: 3310-3316. PMID: 27255441.

Phongsopitanun, W., Kudo, T., Ohkuma, M., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S. 2016. Streptomyces verrucosisporus sp. nov., isolated from marine sediments. Int. J. Syst. Evol. Microbiol. 66: 3607-3613. PMID: 27306744.

Harada, T., Dang, V. C., Nguyen, D. P., Nguyen, T. A., Sakamoto, M., Ohkuma, M., Motooka, D., Nakamura, S., Uchida, K., Jinnai, M., Yonogi, S., Kawahara, R., Kanki, M., Kawai, T., Kumeda, Y., and Yamamoto, Y. 2016. Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver. Int. J. Syst. Evol. Microbiol. 66: 3779-3785. PMID: 27374383.

Tohno, M., Sakamoto, M., Ohkuma, M., and Tajima, K. 2016. Paenibacillus silagei sp. nov. isolated from corn silage. Int. J. Syst. Evol. Microbiol. 66: 3873-3877. PMID: 27380964.

Klykleung, N., Phongsopitanun, W., Pittayakhajonwut, P., Ohkuma, M., Kudo, T., and Tanasupawat, S. 2016. Streptomyces phyllanthi sp. nov., isolated from the stem of Phyllanthus amarus. Int. J. Syst. Evol. Microbiol. 66: 3923-3928. PMID: 27393329.

Sujarit, K., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S. 2016. Streptomyces palmae sp. nov., isolated from oil palm (Elaeis guineensis) rhizosphere soil. Int. J. Syst. Evol. Microbiol. 66: 3983-3988. PMID: 27405543.

Minegishi, H., Shimogaki, R., Enomoto, S., Echigo, A., Kondo, Y., Nagaoka, S., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Nunoura, T., Takai, K., and Usami, R. 2016. Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 66: 4975-4980. PMID: 27562780.

Iino, T., Ohkuma, M., Kamagata, Y., and Amachi, S. 2016. Iodidimonas muriae gen. nov., sp. nov., an aerobic iodide-oxidizing bacterium isolated from brine of a natural gas and iodine recovery facility, and proposals of Iodidimonadaceae fam. nov., Iodidimonadales ord. nov., Emcibacteraceae fam. nov. and Emcibacterales ord. nov. Int. J. Syst. Evol. Microbiol. 66: 5016-5022. PMID: 27566239.

Kondo, Y., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Tanaka, A., Takahashi-Ando, N., Fukushima, Y., Yoshida, Y., Ihara, K., and Usami, R. 2016. Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 66: 5314-5319. PMID: 27666573.

Hamana, K., Furuchi, T., Hayashi, H., Itoh, T., Ohkuma, M., and Niitsu, M. 2016. Occurrence of two novel linear penta-amines, pyropentamine and homopyropentamine, in extremely thermophilic Thermus composti. J. Gen. Appl. Microbiol. 62: 334-339. PMID: 27885192.

Tomihama, T., Nishi, Y., Mori, K., Shirao, T., Iida, T., Uzuhashi, S., Ohkuma, M., and Ikeda, S. 2016. Rice bran amendment suppresses potato common scab by increasing antagonistic bacterial community levels in the rhizosphere. Phytopathology 106: 719-728. PMID: 27050572.

Igai, K., Itakura, M., Nishijima, S., Tsurumaru, H., Suda, W., Tsutaya, T., Tomitsuka, E., Tadokoro, K., Baba, J., Odani, S., Natsuhara, K., Morita, A., Yoneda, M., Greenhill, A. R., Horwood, P. F., Inoue, J., Ohkuma, M., Hongoh, Y., Yamamoto, T., Siba, P. M., Hattori, M., Minamisawa, K., and Umezaki, M. 2016. Nitrogen fixation and nifH diversity in human gut microbiota. Sci. Rep. 6: 31942. PMID: 27554344.

Gao, F., Al-Saari, N., Rohul Amin, A. K. M., Sato, K., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hargreaves, P. I., Meirelles, P. M., Thompson, F. L., Thompson, C., Gomez-Gil, B., Sawabe, T., and Sawabe, T. 2016. Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan. Syst. Appl. Microbiol. 39: 330-335. PMID: 27262360.

Itoh, T. 2016. Caldisphaeraceae, In: Whitman, W. B. (ed.), Bergey’s Manual of Systematics of Archaea and Bacteria, pp. 1-3, John Wiley & Sons, Chichester. DOI: 10.1002/9781118960608.fbm00267.

Itoh, T. 2016. Caldisphaera, In: Whitman, W. B. (ed.), Bergey’s Manual of Systematics of Archaea and Bacteria, pp. 1-4, John Wiley & Sons, Chichester. DOI: 10.1002/9781118960608.gbm01323.

Itoh, T. 2016. Vulcanisaeta, In: Whitman, W. B. (ed.), Bergey’s Manual of Systematics of Archaea and Bacteria, pp. 1-7, John Wiley & Sons, Chichester. DOI: 10.1002/9781118960608.gbm01326.

Itoh, T. 2016. Natronolimnobius, In: Whitman, W. B. (ed.), Bergey’s Manual of Systematics of Archaea and Bacteria, pp. 1-8, John Wiley & Sons, Chichester. DOI: 10.1002/9781118960608.gbm01360.

Itoh, T. 2016. Thermogymnomonas, In: Whitman, W. B. (ed.), Bergey’s Manual of Systematics of Archaea and Bacteria, pp. 1-5, John Wiley & Sons, Chichester. DOI: 10.1002/9781118960608.gbm01374.

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2005 2004 2003 2002 2001 2000 1999 1998 1997
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2015

Uzuhashi, S., Okada, G., and Ohkuma, M. 2015. Four new Pythium species from aquatic environments in Japan. Antonie van Leeuwenhoek 107: 375-391. PMID: 25411087.

Bangash, A., Ahmed, I., Abbas, S., Kudo, T., Shahzad, A., Fujiwara, T., and Ohkuma, M. 2015. Kushneria pakistanensis sp. nov., a novel moderately halophilic bacterium isolated from rhizosphere of a plant (Saccharum spontaneum) growing in salt mines of the Karak area in Pakistan. Antonie van Leeuwenhoek 107: 991-1000. PMID: 25631404.

Abbas, S., Ahmed, I., Iida, T., Lee, Y.-J., Busse, H.-J., Fujiwara, T., and Ohkuma, M. 2015. A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp. nov., isolated from industrial effluent in Pakistan. Antonie van Leeuwenhoek 108: 859-870. PMID: 26238381.

Abbas, S., Ahmed, I., Kudo, T., Iqbal, M., Lee, Y.-J., Fujiwara, T., and Ohkuma, M. 2015. A heavy metal tolerant novel bacterium, Bacillus malikii sp. nov., isolated from tannery effluent wastewater. Antonie van Leeuwenhoek 108: 1319-1330.PMID: 26362330.

Iino, T., Ito, K., Wakai, S., Tsurumaru, H., Ohkuma, M., and Harayama, S. 2015. Iron corrosion induced by nonhydrogenotrophic nitrate-reducing Prolixibacter sp. strain MIC1-1. Appl. Environ. Microbiol. 81: 1839-1846. PMID: 25548048.

Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, K. G., Prasetya, B., Sakamoto, M., and Ohkuma, M. 2015. Fermentation characteristics and microbial diversity of tropical grass-legumes silages. Asian Australas. J. Anim. Sci. 28: 511-518. PMID: 25656192.

Kato, S., Ikehata, K., Shibuya, T., Urabe, T., Ohkuma, M., and Yamagishi, A. 2015. Potential for biogeochemical cycling of sulfur, iron and carbon within massive sulfide deposits below the seafloor. Environ. Microbiol. 17: 1817-1835. PMID: 25330135.

Yuki, M., Kuwahara, H., Shintani, M., Izawa, K., Sato, T., Starns, D., Hongoh, Y., and Ohkuma, M. 2015. Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose. Environ. Microbiol. 17: 4942-4963. 26079531.

Kato, S., Ohkuma, M., Powell, D. H., Krepski, S. T., Oshima, K., Hattori, M., Shapiro, N., Woyke, T., and Chan, C. S. 2015. Comparative genomic insights into ecophysiology of neutrophilic, microaerophilic iron oxidizing bacteria. Front. Microbiol. 13: 1265. 26617599.

Pramono, A. K., Sakamoto, M., Iino, T., Hongoh, Y., and Ohkuma, M. 2015. Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus. Int. J. Syst. Evol. Microbiol. 65: 681-685. PMID: 25428419.

Phongsopitanun, W., Tanasupawat, S., Suwanborirux, K., Ohkuma, M., and Kudo, T. 2015. Actinomadura rayongensis sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. 65: 890-895. PMID: 25525125.

Thamacharoensuk, T., Kitahara, M., Ohkuma, M., Thongchul, N., and Tanasupawat, S. 2015. Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand. Int. J. Syst. Evol. Microbiol. 65: 1220-1226. PMID: 25634946.

Sakamoto, M., Tanaka, Y., Benno, Y., and Ohkuma, M. 2015. Parabacteroides faecis sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 65: 1342-1346. PMID: 25667391.

Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R. 2015. Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 65: 1634-1639. PMID: 25721723.

Minegishi, H., Echigo, A., Kuwahara, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R. 2015. Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 65: 1640-1645. PMID: 25721724.

Tohno, M., Kitahara, M., Irisawa, T., Ohmori, H., Masuda, T., Ohkuma, M., and Tajima, K. 2015. Lactobacillus mixtipabuli sp. nov. isolated from total mixed ration silage. Int. J. Syst. Evol. Microbiol. 65: 1981-1985. PMID: 25807979.

Kondo, Y., Minegishi, H., Echigo, A, Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Takahashi-Ando, N., Fukushima, Y., Yoshida, Y., and Usami, R. 2015. Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt. Int. J. Syst. Evol. Microbiol. 65: 2345-2350. PMID: 25870255.

Sakamoto, M., Li, D., Shibata, Y., Takeshita, T., Yamashita, Y., and Ohkuma, M. 2015. Porphyromonas pasteri sp. nov., isolated from human saliva. Int. J. Syst. Evol. Microbiol. 65: 2511-2515. PMID: 25933621.

Iino, T., Sakamoto, M., and Ohkuma, M. 2015. Prolixibacter denitrificans sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolixibacter and Prolixibacter bellariivorans. Int. J. Syst. Evol. Microbiol. 65: 2865-2869. PMID: 25991662.

Shimane, Y., Minegishi, H., Echigo, A., Kamekura, M., Itoh, T., Ohkuma, M., Tsubouchi, T., Usui, K., Maruyama, T., Usami, R., and Hatada, Y. 2015. Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample. Int. J. Syst. Evol. Microbiol. 65: 3830-3835. 26238453.

Klykleung, N., Tanasupawat, S., Pittayakhajonwut, P., Ohkuma, M., and Kudo, T. 2015. Amycolatopsis stemonae sp. nov., isolated from Thai medicinal plant. Int. J. Syst. Evol. Microbiol. 65: 3894-3899. PMID: 26243287.

Saputra, S., Irisawa, T., Sakamoto, M., Kitahara, M., Sulistiani, Yulinery, T., Ohkuma, M., and Dinoto, A. 2016. Bacteroides caecigallinarum sp. nov., isolated from caecum of an Indonesian chicken. Int. J. Syst. Evol. Microbiol. 65: 4341-4346. 26345419.

Phongsopitanun, W., Kudo, T., Mori, M., Shiomi, K., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S. 2015. Micromonospora fluostatini sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 65: 4417-4423. PMID: 26358439.

Dekio, I., Culak, R., Misra, R., Gaulton, T., Fang, M., Sakamoto, M., Ohkuma, M., Oshima, K., Hattori, M., Klenk, H.-P., Rajendram, D., Gharbia, S. E., and Shah, H. N. 2015. Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov. Int. J. Syst. Evol. Microbiol. 65: 4776-4787. PMID: 26432704.

Phongsopitanun, W., Kudo, T., Ohkuma, M., Suwanborirux, K., and Tanasupawat, S. 2015. Dactylosporangium sucinum sp. nov., isolated from Thai peat swamp forest soil. J. Antibiot. 68: 379-384. PMID: 25605042.

Inoue, J., Oshima, K., Suda, W., Sakamoto, M., Iino, T., Noda, S., Hongoh, Y., Hattori, M., and Ohkuma, M. 2015. Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes. Microbes Environ. 30: 44-50. PMID: 25736980.

Takashima, M., Manabe, R., Iwasaki, W., Ohyama, A., Ohkuma, M., and Sugita, T. 2015. Selection of orthologous genes for construction of a highly resolved phylogenetic tree and clarification of the phylogeny of Trichosporonales species. PLOS ONE 10: e0131217. PMID: 26241762.

Al-Saari, N., Gao, F., Rohul, A. A. K. M., Sato, K., Sato, K., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Meirelles, P. M., Thompson, F. L., Thompson, C., Filho, G. M. A., Gomez-Gil, B., Sawabe, T., and Sawabe, T. 2015. Advanced microbial taxonomy combined with genome-based-approaches reveals that Vibrio astriarenae sp. nov., an agarolytic marine bacterium, forms a new clade in Vibrionaceae. PLOS ONE 10: e0136279. PMID: 26313925.

Ohkuma, M., Noda, S., Hattori, S., Iida, T., Yuki, M., Starns, D., Inoue, J., Darby, A. C., and Hongoh, Y. 2015. Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist. Proc. Natl. Acad. Sci. USA 112: 10224-10230. PMID: 25979941.

Sakamoto, M., Lapidus, A. L., Han, J., Trong, S., Haynes, M., Reddy, T. B. K., Mikhailova, N., Huntemann, M., Pati, A., Ivanova, N. N., Pukall, R., Markowitz, V. M., Woyke, T., Klenk, H.-P., Kyrpides, N. C., and Ohkuma, M. 2015. High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM18169T) from chicken caecum. Stand. Genomic Sci. 10: 48. PMID: 26380636.

Wang, Q.-M., Groenewald, M., Takashima, M., Theelen, B., Han, P.-J., Liu, X.-Z., Boekhout, T., and Bai, F.-Y. 2015. Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. Stud. Mycol. 81: 27-53. PMID: 26955197.

Kato, S., Suzuki, K., Shibuya, T., Ishibashi, J., Ohkuma, M., and Yamagishi, A. 2015. Experimental assessment of microbial effects on chemical interaction between seafloor massive sulfides and seawater at 4ºC, In: Ishibashi, J., Okino, K., and Sunamura, M. (eds.), Subseafloor Biosphere Linked to Hydrothermal Systems, pp. 95-103, Springer, Tokyo. DOI: 10.1007/978-4-431-54865-2_9.

Kato, S., Ohkuma, M., and Yamagishi, A. 2015. Intra-field variation of prokaryotic communities on and below the seafloor in the back-arc hydrothermal system of the Southern Mariana Trough, In: Ishibashi, J., Okino, K., and Sunamura, M. (eds.), Subseafloor Biosphere Linked to Hydrothermal Systems, pp. 301-311, Springer, Tokyo. DOI: 10.1007/978-4-431-54865-2_24.

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2005 2004 2003 2002 2001 2000 1999 1998
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2014

Huang, I-N., Sato, Y., Sakamoto, M., Ohkuma, M., Ohnuma, S., Naitoh, T., Shibata, C., Horii, A., Nishimura, J., Kitazawa, H., and Saito, T. 2014. Diversity of microflora in colonic mucus from severe ulcerative colitis patients analyzed by terminal restriction fragment length polymorphism and clone libraries of bacterial 16S rRNA gene sequences. Adv. Microbiol. 4: 857-870. DOI: 10.4236/aim.2014.413095.

Shintani, M., Matsui, K., Inoue, J., Hosoyama, A., Ohji, S., Yamazoe, A., Nojiri, H., Kimbara, K., and Ohkuma, M. 2014. Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community. Appl. Environ. Microbiol. 80: 5283-5290. PMID: 24141122.

Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M., Yamaguchi, S., Sakuradani, E., Ogawa, J., and Shima, J. 2014. Selection of oleaginous yeasts with high lipid productivity for practical biodiesel production. Bioresour. Technol. 153: 230-235. PMID: 24368271.

Nakabachi, A., Ishida, K., Hongoh, Y., Ohkuma, M., and Miyagishima, S. 2014. Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont. Curr. Biol. 24: R640-R641. PMID: 25050957.

Ikeda, R., Ichikawa, T., Miyazaki, Y., Shimizu, N., Ryoke, T., Haru, K., Sugita, T., and Takashima, M. 2014. Detection and characterization of plasminogen receptors on clinical isolates of Trichosporon asahii. FEMS Yeast Res. 14: 1186-1195. PMID: 25263492.

Lackner, M., Sybren de Hoog, G., Yang, L., Moreno, L. F., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Flörl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J.-P., Cano-Lira, J.-F., Guarro, J., Gené, J., Silva, F. F., Haido, R., Haase, G., Havlicek, V., Garcia-Hermoso, D., Meis, J. F., Hagen, F., Kirchmair, M., Rainer, J., Schwabenbauer, K., Zoderer, M., Meyer, W., Gilgado, F., Schwabenbauer, K., Vicente, V. A., Piecková, E., Regenermel, M., Rath, P.-M., Steinmann, J., Wellington de Alencar, X., Symoens, F., Tintelnot, K., Ulfig, K., Velegraki, A., Tortorano, M. A., Giraud, S., Mina, S., Rigler-Hohenwarter, K., Hernando, F. L., Ramirez-Garcia, A., Pellon, A., Kaur, J., Bergter, E. B., Vieira de Meirelles, J., Dutra da Silva, I., Delhaes, L., Alastruey-Izquerdo, A., Li, R., Lu, Q., Moussa, T., Almaghrabi, O., Al-Zahrani, H., Okada, G., Deng, S., Liao, W., Zeng, J., Issakainen, J., and Lopes, L. C. L. 2014. Proposed nomenclature for Pseudallescheria, Scedosporium and related genera. Fungal Divers. 67: 1-10. DOI: 10.1007/s13225-014-0295-4.

Ohkuma, M., Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., and Hattori, M. 2014. Draft genome sequence of an alkaliphilic and xylanolytic Paenibacillus sp. strain JCM 10914, isolated from the gut of a soil-feeding termite. Genome Announc. 2: e01144-13. PMID: 24459258.

Sakamoto, M., Oshima, K., Suda, W., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of three strains of Bacteroides pyogenes isolated from a cat and swine. Genome Announc. 2: e01242-13. PMID: 24482517.

Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of three alkaliphilic Bacillus strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T. Genome Announc. 2: e01258-13. PMID: 24482522.

Yuki, M., Oshima, K., Suda, W., Sakamoto, M., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequence of Bacteroides reticulotermitis strain JCM 10512T, isolated from the gut of a termite. Genome Announc. 2: e00072-14. PMID: 24526645.

Ahmed, I., Oshima, K., Suda, W., Kitamura, K., Iida, T., Ohmori, Y., Fujiwara, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequence of the boron-tolerant and moderately halotolerant bacterium Gracilibacillus boraciitolerans JCM 21714T. Genome Announc. 2: e00097-14. PMID: 24558242.

Yuki, M., Oshima, K., Suda, W., Sakamoto, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma M. 2014. Draft genome sequence of Clostridium straminisolvens strain JCM 21531T, isolated from a cellulose-degrading bacterial community. Genome Announc. 2: e00110-14. PMID: 24558248.

Starns, D., Oshima, K., Suda, W., Iino, T., Yuki, M., Inoue, J., Kitamura, K., Iida, T., Darby, A., Hattori, M., and Ohkuma, M. 2014. Draft genome sequence of Cytophaga fermentans JCM 21142T, a facultative anaerobe isolated from marine mud. Genome Announc. 2: e00206-14. PMID: 24675859.

Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequence of Paenibacillus pini JCM 16418T, isolated from the rhizosphere of pine tree. Genome Announc. 2: e00210-14. PMID: 24652984.

Kudo, T., Sakamoto, K., Akinaga, M., Kawauchi, A., Nakahara, T., Zhang, X., Yamada, A., Oshima, K., Suda, W., Kuwahara, H., Nakamura, N., Nogi, Y., Kitamura, K., Yuki, M., Iida, T., Moriya, S., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of cyclodextrin-producing alkaliphilic Bacillus spp. strains JCM 19045, JCM 19046, and JCM 19047. Genome Announc. 2: e00211-14. PMID: 24652985.

Yuki, M., Oshima, K., Suda, W., Kitahara, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of two Lactobacillus strains, Lactobacillus farraginis JCM 14108T and Lactobacillus composti JCM 14202T, isolated from composts of distilled shochu residue. Genome Announc. 2: e00257-14. PMID: 24675866.

Kudo, T., Kidera, A., Kida, M., Kawauchi, A., Shimizu, R., Nakahara, T., Zhang, X., Yamada, A., Amano, M., Hamada, Y., Taniyama, S., Arakawa, O., Yoshida, A., Oshima, K., Suda, W., Kuwahara, H., Nogi, Y., Kitamura, K., Yuki, M., Iida, T., Moriya, S., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of Psychrobacter strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, isolated preferentially from frozen aquatic organisms. Genome Announc. 2: e00280-14. PMID: 24699965.

Irisawa, T., Oshima, K., Suda, W., Kitahara, M., Sakamoto, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M. 2014. Draft genome sequence of Lactobacillus sucicola JCM 15457T, a motile lactic acid bacterium isolated from oak sap. Genome Announc. 2: e00403-14. PMID: 24812225.

Ivanova, E. P., Ng, H. J., Webb, H. K., Feng, G., Oshima, K., Hattori, M., Ohkuma, M., Sergeev, A. F., Mikhailov, V. V., Crawford, R. J., and Sawabe, T. 2014. Draft genome sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T. Genome Announc. 2: e00442-14. PMID: 24855296.

Kudo, T., Nakahara, T., Zhang, X., Taniyama, S., Arakawa, O., Murase, S., Nakata, H., Oshima, K., Suda, W., Kitamura, K., Iida, T., Oshida, Y., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of Geomicrobium sp. strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, isolated from aquatic samples. Genome Announc. 2: e00622-14. PMID: 24948772.

Kudo, T., Kawauchi, A., Nakahara, T., Zhang, X., Taniyama, S., Takatani, T., Arakawa, O., Oshima, K., Suda, W., Kitamura, K., Iida, T., Iino, T., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M. 2014. Draft genome sequences of Vibrio sp. strains isolated from tetrodotoxin-bearing scavenging gastropod. Genome Announc. 2: e00623-14. PMID: 24948773.

Al-Saari, N., Meirelles, P. M., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Thompson, F.L., Gomez-Gil, B., Sawabe, T., and Sawabe, T. 2014. Draft genome sequences of two Vibrionaceae species, Vibrio ponticus C121 and Photobacterium aphoticum C119, isolated as coral reef microbiota. Genome Announc. 2: e01095-14. PMID: 25359913.

Takatani, N., Nakanishi, M., Meirelles, P., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hosokawa, M., Miyashita, K., Thompson, F. L., Niwa, A., Sawabe, T., and Sawabe, T. 2014. Draft genome sequences of marine flavobacterium Algibacter lectus strains SS8 and NR4. Genome Announc. 2: e01168-14. PMID: 25395640.

Takatani, N., Nakanishi, M., Meirelles, P., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hosokawa, M., Miyashita, K., Thompson, F. L., Niwa, A., Sawabe, T., and Sawabe, T. 2014. Draft genome sequence of marine flavobacterium Jejuia pallidilutea strain 11shimoA1 and pigmentation mutants. Genome Announc. 2: e01236-14. PMID: 25477402.

Tsuchida, S., Takahashi, S., Philippe, P., Nguema, M., Fujita, S., Kitahara, M., Yamagiwa, J., Ngomanda, A., Ohkuma, M., and Ushida, K. 2014. Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla). Int. J. Syst. Evol. Microbiol. 64: 449-455. PMID: 24158945.

Kato, S., Krepski, S., Chan, C., Itoh, T., and Ohkuma, M. 2014. Ferriphaselus amnicola gen. nov., sp. nov., a neutrophilic, stalk-forming, iron-oxidizing bacterium isolated from an iron-rich groundwater seep. Int. J. Syst. Evol. Microbiol. 64: 921-925. PMID: 24425821.

Tohno, M., Kitahara, M., Matsuyama, S., Kimura, K., Ohkuma, M., and Tajima, K. 2014. Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola. Int. J. Syst. Evol. Microbiol. 64: 1229-1236. PMID: 24421273.

Landell, M. F., Brandão, L. R., Barbosa, A. C., Ramos, J. P., Safar, S. V., Gomes, F. C., Sousa, F. M., Morais, P. B., Broetto, L., Leoncini, O., Ribeiro, J. R., Fungsin, B., Takashima, M., Nakase, T., Lee, C. F., Vainstein, M. H., Fell, J. W., Scorzetti, G., Vishniac, H. S., Rosa, C. A., and Valente, P. 2014. Hannaella pagnoccae sp. nov., a tremellaceous yeast species isolated from plants and soil. Int. J. Syst. Evol. Microbiol. 64: 1970-1977. PMID: 24614844.

Ahmed, I., Kudo, T., Abbas, S., Ehsan, M., Iino, T., Fujiwara, T., and Ohkuma, M. 2014. Cellulomonas pakistanensis sp. nov., a moderately halotolerant Actinobacteria. Int. J. Syst. Evol. Microbiol. 64: 2305-2311. PMID: 24733176.

Phongsopitanun, W., Thawai, C., Suwanborirux, K., Kudo, T., Ohkuma, M., and Tanasupawat, S. 2014. Streptomyces chumphonensis sp. nov., isolated from marine sediments. Int. J. Syst. Evol. Microbiol. 64: 2605-2610. PMID: 24814337.

Irisawa, T., Tanaka, N., Kitahara, M., Sakamoto, M., Ohkuma, M., and Okada S. 2014. Lactobacillus furfuricola sp. nov., isolated from Nukadoko, rice bran paste for Japanese pickles. Int. J. Syst. Evol. Microbiol. 64: 2902-2906. PMID: 24876240.

Sakamoto, M., Tanaka, Y., Benno, Y., and Ohkuma, M. 2014. Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas. Int. J. Syst. Evol. Microbiol. 64: 2992-2997. PMID: 24903545.

Shiratori-Takano, H., Akita, K., Yamada, K., Itoh, T., Sugihara, T., Beppu, T., and Ueda, K. 2014. Description of Symbiobacterium ostreiconchae sp. nov., Symbiobacterium turbinis sp. nov. and Symbiobacterium terraclitae sp. nov., isolated from shellfish, emended description of the genus Symbiobacterium and proposal of Symbiobacteriaceae fam. nov. Int. J. Syst. Evol. Microbiol. 64: 3375-3383. PMID: 25013225.

Iino, T., Mori, K., Itoh, T., Kudo, T., Suzuki, K., Ohkuma, M. 2014. Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov. Int. J. Syst. Evol. Microbiol. 64: 3660-3667. PMID: 25096325.

Tsuchida, S., Kitahara, M., Nguema, P. P. M., Norimitsu, S., Fujita, S., Yamagiwa, J., Ngomanda, A., Ohkuma, M., and Ushida, K. 2014. Lactobacillus gorillae sp. nov., isolated from the faeces of captive and wild western lowland gorillas (Gorilla gorilla gorilla). Int. J. Syst. Evol. Microbiol. 64: 4001-4006. PMID: 25240022.

Ahmed, I., Abbas, S., Kudo, T., Iqbal, M., Fujiwara, T., and Ohkuma, M. 2014. Deinococcus citri sp. nov., isolated from citrus leaf canker lesions. Int. J. Syst. Evol. Microbiol. 64: 4134-4140. PMID: 25256704.

Sato, T., Kuwahara, H., Fujita, K., Noda, S., Kihara, K., Yamada, A., Ohkuma, M., Hongoh, Y. 2014. Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut. ISME J. 8: 1008-1019. PMID: 24335826.

Hamana, K., Hayashi, H., Niitsu, M., Itoh, T., and Ohkuma, M. 2014. Long linear and branched polyamines of new thermophilic members located in the bacterial orders Thermotogales, Thermales, Aquificales, Thermodesulfobacteriales, Clostridiales, Thermoanaerobacterales, Bacillales, Caldisericales and Desulfovibrionales, and the family Rhodothermaceae – Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VIII -. J. Jpn. Soc. for Extremophiles. 13: 32-52.

Namwong, S., Tanasupawat, S., Benjakul, S., Kudo, T., Itoh, T., and Visessanguan, W. 2014. Identification of halophilic strains and its proteolytic degradation of fish protein. Malaysian J. Microbiol. 10: 92-100.

Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, K. G., Praseta, B., Sakamoto, M., and Ohkuma, M. 2014. Methane mitigation and microbial diversity of silage diets containing Calliandra calothyrsus in a rumen in vitro fermentation system. Media Peternakan 37: 121-128. DOI: 10.5398/medpet.2014.37.2.121.

Okazaki, K., Iino, T., Kuroda, Y., Taguchi, K., Takahashi, H., Ohwada, T., Tsurumaru, H., Okubo, T., Minamisawa, K., and Ikeda, S. 2014. An assessment of the diversity of culturable bacteria from main root of sugar beet. Microbes Environ. 29:220-223. PMID: 24789987.

Mekha, N., Takashima, M., Boon-Long, J., Cho, O., and Sugita, T. 2014. Three new basidiomycetous yeasts, Pseudozyma alboarmeniaca sp. nov., Pseudozyma crassa sp. nov. and Pseudozyma siamensis sp. nov. isolated from Thai patients. Microbiol. Immunol. 58: 9-14. PMID: 24215507

Abbas, S., Ahmed, I., Kudo, T., Iida, T., Ali, G. M., Fujiwara, T., and Ohkuma, M. 2014. Heavy metal-tolerant and psychrotolerant bacterium Acinetobacter pakistanensis sp. nov., isolated from a textile dyeing wastewater treatment pond. Pak. J. Agric. Sci. 51: 595-608.

Kyrpides, N. C., Hugenholtz, P., Eisen, J. A., Woyke, T., Göker, M., Parker, C. T., Amann, R., Beck, B. J., Chain, P. S. G., Chun, J., Colwell, R. R., Danchin, A., Dawyndt, P., Dedeurwaerdere, T., DeLong, E. F., Detter, J. C., De, Vos, P., Donohue, T. J., Dong, X.-Z., Ehrlich, D. S., Fraser, C., Gibbs, R., Gilbert, J., Gilna, P., Glöckner, F. O., Jansson, J. K., Keasling, J. D., Knight, R., Labeda, D., Lapidus, A., Lee, J. S., Li, W.-J., Ma, J., Markowitz, V., Moore, E. R., Morrison, M., Meyer, F., Nelson, K. E., Ohkuma, M., Ouzounis, C. A., Pace, N., Parkhill, J., Qin, N., Rossello-Mora, R., Sikorski, J., Smith, D., Sogin, M., Stevens, R., Stingl, U., Suzuki, K., Taylor, D., Tiedje, J. M., Tindall, B., Wagner, M., Weinstock, G., Weissenbach, J., White, O., Wang, J., Zhang, L., Zhou, Y.-G., Field, D., Whitman, W. B., Garrity, G. M., and Klenk, H.-P. 2014. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLOS Biol. 12: e1001920. PMID: 25093819.

Goto, Y., Obata, T., Kunisawa , J., Sato, S., Ivanov, I. I., Lamichhane, A., Takeyama, N., Kamioka, M., Sakamoto, M., Matsuki T., Setoyama, H., Imaoka, A., Uematsu, S., Akira, S., Domino, S. E., Kulig, P., Becher, B., Renauld, J. C., Sasakawa, C., Uemesaki, Y., Benno, Y., and Kiyono, H. 2014. Innate lymphoid cells regulate intestinal epithelial cell glycosylation. Science 345: 1254009. PMID: 25214634.

Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M., Yamaguchi, S., Sakuradani, E., Ogawa, J., Ohkuma, M., and Shima, J. 2014. Cryptococcus terricola is a promising oleaginous yeast for biodiesel production from starch through consolidated bioprocessing. Sci. Rep. 4: 4776. PMID: 24758986.

Itoh, T. 2014. The family Caldisphaeraceae, In: Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes – Other Major Lineages of Bacteria and the Archaea, pp. 25-28, Springer-Verlag, Heidelberg. DOI: 10.1007/978-3-642-38954-2_333.

Itoh, T. 2014. The family Thermoproteaceae, In: Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes – Other Major Lineages of Bacteria and the Archaea, pp. 389-401, Springer-Verlag, Heidelberg. DOI: 10.1007/978-3-642-38954-2_330.

Sakamoto, M. 2014. The family Porphyromonadaceae, In: Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes – Other Major Lineages of Bacteria and the Archaea, pp. 811-824, Springer-Verlag, Heidelberg. DOI: 10.1007/978-3-642-38954-2_132.

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2013

Sitdhipol, J., Tanasupawat, S., Tepkasikul, P., Yukphan, P., Tosukhowong, A., Itoh, T., Benjakul, S., and Visessanguan, W. 2013. Identification and histamine formation of Tetragenococcus isolated from Thai fermented food products. Ann. Microbiol. 63: 745-753. DOI: 10.1007/s13213-012-0529-1.

Kim, T.-Y., Kim, S.-J., Park, S.-J., Kim, J.-G., Cha, I.-T., Jung, M.-Y., Lee, S.-A, Roh, S. W., Yim, K. J., Itoh, T., and Rhee, S.-K. 2013. Natronomonas gomsonensis sp. nov., isolated from a solar saltern. Antonie van Leeuwenhoek 104: 627-635. PMID: 23851717.

Kato, S., Chan, C., Itoh, T., and Ohkuma, M. 2013. Functional gene analysis of freshwater iron-rich flocs at circumneutral pH and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium. Appl. Environ. Microbiol. 79: 138-145. PMID: 23811518.

Wu, L., Sun, Q., Sugawara, H., Yang, S., Zhou, Y., McCluskey, K., Vasilenko, A., Suzuki, K., Ohkuma, M., Lee, Y., Robert, V., Ingsriswang, S., Guissart, F., Philippe, D., and Ma, J. 2013. Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, andvisualization system for microbial resources. BMC Genomics 14: 933. PMID: 24377417.

Nakabachi, A., Ueoka, R., Oshima, K., Teta, R., Mangoni, A., Gurgui, M., Oldham, N. J., van Echten-Deckert, G., Okamura, K., Yamamoto, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S, Hattori, M., Piel, J., Fukatsu, T. 2013. Defensive bacteriome symbiont with a drastically reduced genome. Curr. Biol. 23: 1478-1484. PMID: 23850282.

Kato, S., Nakawake, M., Kita, J., Yamanaka, T., Utsumi, M., Okamura, K., Ishibashi, J., Ohkuma, M., and Yamagishi, A. 2013. Characteristics of microbial communities in crustal fluids in a deep-sea hydrothermal field of the suiyo seamount. Front. Microbiol. 4:85. PMID: 23626587.

Mino, S., Makita, H., Toki, T., Miyazaki, J., Kato, S., Watanabe, H., Imachi, H., Watsuji, T., Nunoura, T., Kojima, S., Sawabe, T., Takai, K., and Nakagawa, S. 2013. Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific. Front. Microbiol. 4:107. PMID: 23630523.

Sakamoto, M., Tanaka, N., Shiwa, Y., Yoshikawa, H., and Ohkuma, M. 2013. Draft genome sequences of Porphyromonas crevioricanis JCM 15906T and Porphyromonas cansulci JCM 13913T isolated from a canine oral cavity. Genome Announc. 1: e00483-13. PMID: 23887912.

Sakamoto, M. and Ohkuma, M. 2013. Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority. Int. J. Syst. Evol. Microbiol. 63: 454-457. PMID: 22467157.

Songsumanus, A., Tanasupawat, S., Igarashi, Y., and Kudo, T. 2013. Micromonospora maritima sp. nov., isolated from mangrove soil. Int. J. Syst. Evol. Microbiol. 63: 554-559. PMID: 22523171.

Supong, K., Suriyachadkun, C., Tanasupawat, S., Suwanborirux, K., Pittayakhajonwut, P., Kudo, T., and Thawai, C. 2013. Micromonospora sediminicola sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 63: 570-575. PMID: 22523170.

Sakamoto, M. and Ohkuma, M. 2013. Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus). Int. J. Syst. Evol. Microbiol. 63: 691-695. PMID: 22544795.

Shimoshige, H., Yamada, T., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., and Usami, R. 2013. Halobaculum magnesiiphilum sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 63: 861-866. PMID: 22611203.

Shimane, Y., Nagaoka, S., Minegishi, H., Kamekura, M., Echigo, A., Hatada, Y., Ito, T., and Usami, R. 2013. Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt. Int. J. Syst. Evol. Microbiol. 63: 920-924. PMID: 22659499.

Thawai, C., Thamsathit, W., and Kudo, T. 2013. Planosporangium thailandense sp. nov., isolated from soil from a Thai hot spring. Int. J. Syst. Evol. Microbiol. 63: 1051-1055. PMID: 22707531.

Yamauchi, Y., Minegishi, H., Echigo, A., Shimane, Y., Shimoshige, H., Kamekura, M., Itoh, T., Doukyu, N., Inoue, A., and Usami, R. 2013. Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. Int. J. Syst. Evol. Microbiol. 63: 1138-1142. PMID: 22753525.

Tohno, M., Kitahara, M., Inoue, H., Uegaki, R., Irisawa, T., Ohkuma, M., and Tajima, K. 2013. Weissella oryzae sp. nov., isolated from fermented rice grains. Int. J. Syst. Evol. Microbiol. 63: 1417-1420. PMID: 22843715.

Ziegler, S., Waidner, B., Itoh, T., Schumann, P., Spring, S., and Gescher, J. 2013. Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm. Int. J. Syst. Evol. Microbiol. 63: 1499-1504. PMID: 22863988.

Promnuan, Y., Kudo, T., Ohkuma, M., and Chantawannakul, P. 2013. Streptomyces chiangmaiensis sp. nov. and Streptomyces lannensis sp. nov., isolated from the South-East Asian stingless bee (Tetragonilla collina). Int. J. Syst. Evol. Microbiol. 63: 1896-1901. PMID: 23002051.

Tohno, M., Kitahara, M., Uegaki, R., Irisawa, T., Ohkuma, M., and Tajima, K. 2013. Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage. Int. J. Syst. Evol. Microbiol. 63: 2526-2531. PMID: 23223820.

Azuma, R., Ung-Bok, B., Murakami, S., Ishiwata, H., Osaki, M., Shimada, N., Ito, Y., Miyagawa, E., Makino, T., Kudo, T., Takahashi, Y., Yano, I., Murata, R., and Yokoyama, E. 2013. Tonsilliphilus suis gen. nov., sp. nov., causing tonsil infections in pigs. Int. J. Syst. Evol. Microbiol. 63: 2545-2552. PMID: 23243095.

Tohno, M., Kitahara, M., Irisawa, T., Inoue, H., Uegaki, R., Ohkuma, M., and Tajima, K. 2013. Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica). Int. J. Syst. Evol. Microbiol. 63: 2957-2962. PMID: 23378109.

Yamauchi, Y., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Doukyu, N., Inoue, A., and Usami, R. 2013. Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples. Int. J. Syst. Evol. Microbiol. 63: 3143-3147 . PMID: 23435243.

Kitahara, M., Sakamoto, M., Tsuchida, S., Kawasumi, K., Amao, H., Benno, Y., and Ohkuma, M. 2013. Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces. Int. J. Syst. Evol. Microbiol. 63: 3470-3474. PMID: 23563230.

Echigo, A., Minegishi, H., Shimane, Y., Kamekura, M., Itoh, T., and Usami R. 2013. Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt . Int. J. Syst. Evol. Microbiol. 63: 3556-3562. PMID: 23563231.

Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M., and Tajima, K. 2013. Description of Lactobacillus iwatensis sp. nov., isolated from orchardgrass (Dactylis glomerata L.) silage, and Lactobacillus backii sp. nov. Int. J. Syst. Evol. Microbiol. 63: 3854-3860. PMID: 23687059.

Minegishi, H., Yamauchi, Y., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R. 2013. Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. Int. J. Syst. Evol. Microbiol. 63: 4202-4206. PMID: 23771625.

Endo, A., Irisawa, T., Futagawa-Endo, Y., Salminen, S., Ohkuma, M., and Dicks, L. 2013. Lactobacillus faecis sp. nov., isolated from animal faeces. Int. J. Syst. Evol. Microbiol. 63: 4502-4507. PMID: 23907223.

Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M., and Tajima, K. 2013. Lactobacillus silagei sp. nov., isolated from orchardgrass silage. Int. J. Syst. Evol. Microbiol. 63: 4613-4618. PMID: 23919960.

Koyanagi, T., Sakamoto, M., Takeuchi, Y., Maruyama, N., Ohkuma, M., and Izumi, Y. 2013. Comprehensive microbiological findings in peri-implantitis and periodontitis. J. Clin. Periodontol. 40: 218-226. PMID: 23294017.

Hattori, S., Hongoh, Y., Itoh, T., Deevong, P., Trakulnaleamsai, S., Noparatnaraporn, N., Kudo, T., and Ohkuma, M. 2013. Sporomusa intestinalis sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, Termes comis (Termitinae). J. Gen. Appl. Microbiol. 59: 321-324. PMID: 24005182.

Hamana, K., Hayashi, H., Niitsu, M., Takeda, A., and Itoh, T. 2013. Cellular polyamines of alkaliphilic, halophilic and thermophilic methanogens, and acidophilic and alkaliphilic extreme halophiles, and acidophilic thermophiles belonging to the domain Archaea. -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VII-. J. Jpn. Soc. Extremophiles 12: 18-28.

Songsumanus, A., Kudo, T., Igarashi, Y., and Tanasupawat, S. 2013. Characterization and screening of antimicrobial activity of Micromonospora strains from Thai soils. Malaysian J. Microbiol. 9: 260-269. DOI: 10.21161/mjm.51913.

Iino, T., Tamaki, H., Tamazawa, S., Ueno, Y., Ohkuma, M., Suzuki, K., Igarashi, Y., and Haruta, S. 2013. Candidatus Methanogranum caenicola: a novel methanogen from the anaerobic digested sludge, and proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a methanogenic lineage of the class Thermoplasmata. Microbes Environ. 28: 244-250. PMID: 23524372.

Lorliam, W., Akaracharanya, A., Suzuki, M., Ohkuma, M., and Tanasupawat, S. 2013. Diversity and fermentation products of xylose-utilizing yeasts isolated from buffalo feces in Thailand. Microbes Environ. 28: 354-360. PMID: 24005843.

Nakabachi, A., Nikoh, N., Oshima, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S., Hattori, M., and Fukatsu, T. 2013. Horizontal gene acquisition of liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector. PLOS ONE 8: e82612. PMID: 24349319.

Doi, K., Nishizaki, Y., Kimura, H., Kitahara, M., Fujino, Y., Ohmomo, S., Ohshima, T., and Ogata, S. 2013. Identification of thermo tolerant lactic acid bacteria isolated from silage prepared in the hot and humid climate of Southwestern Japan. SpringerPlus 2: 485. PMID: 24130959.

Yarza, P., Spröer, C., Swiderski, J., Mrotzek, N., Spring, S., Tindall, B. J., Gronow, S., Pukall, R., Klenk, H.-P., Lang, E., Verbarg, S., Crouch, A., Lilburn, T., Beck, B., Unosson, C., Cardew, S., Moore, E. R. B., Gomila, M., Nakagawa, Y., Janssens, D., De Vos, P., Peiren, J., Suttels, T., Clermont, D., Bizet, C., Sakamoto, M., Iida, T., Kudo, T., Kosako, Y., Oshida, Y., Ohkuma, M., Arahal, D. R. Spieck, E., Pommerening Roeser, A., Figge, M., Park, D., Buchanan, P., Cifuentes, A., Munoz, R., Euzéby, J. P., Schleifer, K.-H., Ludwig, W., Amann, R., Glöckner, F. O., and Rosselló-Móra, R. 2013. Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Syst. Appl. Microbiol. 36: 69-73. PMID: 23410935.

Itoh, T. and Iino, T. 2013. Phylogeny and biological features of thermophiles, In: Satyanarayana, T., Littlechild, J., and Kawarabayasi, Y. (eds.), Thermophilic Microbes in Environmental and Industrial Biotechnology, 2nd ed., pp. 249-270, Springer, Dordrecht. DOI: 10.1007/978-94-007-5899-5_9.

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2012

Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R., and Cai, Y. 2012. Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim. Sci. J. 83: 111-120. PMID: 22339691.

Saksinchai, S., Suzuki, M., Lumyong, S., Ohkuma, M., and Chantawannakul, P. 2012. Two new species of the genus Candida in the Zygoascus clade, Candida lundiana sp. nov. and Candida suthepensis sp. nov., isolated from raw honey in Thailand. Antonie van Leeuwenhoek 101: 633-640. PMID: 22105532.

Mori, K., Iino, T., Suzuki, K., Yamaguchi, K., and Kamagata, Y. 2012. Aceticlastic and NaCl-requiring methanogen “Methanosaeta pelagica” sp. nov., isolated from marine tidal flat sediment. Appl. Environ. Microbiol. 78: 3416-3423. PMID: 22344667.

Kato. S., Nakawake, M., Ohkuma, M., and Yamagishi, A. 2012. Distribution and phylogenetic diversity of cbbM genes encoding RubisCO form II in a deep-sea hydrothermal field revealed by newly designed PCR primers. Extremophiles 16: 277-283. PMID: 22212659.

Kato, S., Nakamura, K., Toki T., Ishibashi J., Tsunogai, U., Hirota, A., Ohkuma, M., and Yamagishi, A. 2012. Iron-based microbial ecosystem on and below the seafloor: a case study of hydrothermal fields of the Southern Mariana Trough. Front. Microbiol. 3: 89. PMID: 22435065.

Liu, Z., Frigaard, N.-U., Vogl, K., Iino, T., Ohkuma, M., Overmann, J., and Bryant, D. A. 2012. Complete genome of Ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi. Front. Microbiol. 3: 185. PMID: 22661972.

An, K.-D., Degawa, Y., Fujihara, E., Mikawa, T., Ohkuma, M., and Okada, G. 2012. Molecular phylogenetic analyses based on the nuclear rRNA genes and the intron-exon structures of the nuSSU rRNA gene in Dictyocatenulata alba (anamorphic Ascomycota). Fungal Biol. 116: 1134-1145. PMID: 23153804.

Saksinchai, S., Suzuki, M., Chantawannakul, P., Ohkuma, M., and Lumyong, S. 2012. A novel ascosporogenous yeast species, Zygosaccharomyces siamensis, and the sugar tolerant yeasts associated with raw honey collected in Thailand. Fungal Divers. 52: 123-139.

Kato, S., Kikuchi, S., Kashiwabara, T., Takahashi, Y., Suzuki, K., Ito, T., Ohkuma, M., and Yamagishi, A. 2012. Prokaryotic abundance and community composition in a freshwater iron-rich microbial mat at circumneutral pH. Geomicrobiol. J. 29: 896-905.

Mori, K., Iino, T., Ishibashi, J., Kimura, H., Hamada, M., and Suzuki, K. 2012. Meiothermus hypogaeus sp. nov., a moderately thermophilic bacterium isolated from a hot spring. Int. J. Syst. Evol. Microbiol. 62: 112-117. PMID: 21335495.

Minegishi, H., Kamekura, M., Kitajima-Ihara, T., Nakasone, K., Echigo, A., Shimane, Y., Usami, R., Itoh, T., and Ihara, K. 2012. Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups. Int. J. Syst. Evol. Microbiol. 62: 188-195. PMID: 21378133.

Cai, Y., Pang, H., Kitahara, M., and M. Ohkuma 2012. Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus. Int. J. Syst. Evol. Microbiol. 62: 1140-1144. PMID: 21724957.

Kitahara, M., Sakamoto, M., Tsuchida, S., Kawasumi, K., Amao, H., Benno, Y., and Ohkuma, M. 2012. Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. Int. J. Syst. Evol. Microbiol. 62: 1145-1150. PMID: 21724955.

Sakamoto, M. and Ohkuma, M. 2012. Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority. Int. J. Syst. Evol. Microbiol. 62: 1241-1244. PMID: 21764984.

Iino, T., Suzuki, R., Tanaka, N., Kosako, Y., Ohkuma, M., Komagata, K., and Uchimura, T. 2012. Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar. Int. J. Syst. Evol. Microbiol. 62: 1465-1469. PMID: 21841006.

Thawai, C. and Kudo, T. 2012. Promicromonospora thailandica sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 62: 2140-2144. PMID: 22058317.

Pang, H., Kitahara, M., Tan, Z., Wang, Y., Qin, G., Ohkuma, M., and Cai, Y. 2012. Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius. Int. J. Syst. Evol. Microbiol. 62: 2383-2387. PMID: 22140166.

Jabari, L., Gannoun, H., Cayol, J.-L., Hedi, A., Sakamoto, M., Falsen, E., Ohkuma, M., Hamdi, M., Fauque, G., Ollivier, B., and Fardeau, M.-L. 2012. Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters. Int. J. Syst. Evol. Microbiol. 62: 2522-2527. PMID: 22180609.

Sakamoto, M. and Ohkuma, M. 2012. Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella. Int. J. Syst. Evol. Microbiol. 62: 2637-2642. PMID: 22199207.

Thanh, V. N., Hai, D. A., Hien, D. D., Takashima, M., and Lachance, M.-A. 2012. Moniliella carnis sp. nov. and Moniliella dehoogii sp. nov., two novel species of black yeasts isolated from meat processing environments. Int. J. Syst. Evol. Microbiol. 62: 3088-3094. PMID: 22863989.

Iino, T., Suzuki, R., Kosako, Y., Ohkuma, M., Komagata, K., and Uchimura, T. 2012. Acetobacter okinawensis sp. nov., Acetobacter papayae sp. nov., and Acetobacter persicus sp. nov.; novel acetic acid bacteria isolated from stems of sugarcane, fruits, and a flower in Japan. J. Gen. Appl. Microbiol. 58: 235-243. PMID: 22878741.

Hamana, K., Itoh, T., Sakamoto, M., and Hayashi, H. 2012. Covalently linked polyamines in the cell wall peptidoglycan of the anaerobes belonging to the order Selenomonadales. J. Gen. Appl. Microbiol. 58: 339-347. PMID: 22990495.

Thong-On, A., Suzuki, K., Noda, S., Inoue, J., Kajiwara, S., and Ohkuma, M. 2012. Isolation and characterization of anaerobic bacteria for symbiotic recycling of uric acid nitrogen in the gut of various termites. Microbes Environ. 27: 186-192. PMID: 22791052.

Furiya, N., Takamshima, M., and Shiotani, T. 2012. Reclassification of citrus pseudo greasy spot causal yeasts, and a proposal of two new species, Sporobolomyces productus sp. nov. and S. corallinus sp. nov. Mycoscience 53: 261-269.

Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, S., Spouge, J. L., Levesque, C. A., Chen, W., and Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS 109: 6241-6246. PMID: 22454494.

Noda, S., Mantini, C., Meloni, D., Inoue, J., Kitade, O., Viscogliosi, E., and Ohkuma, M. 2012. Molecular phylogeny and evolution of Parabasalia with improved taxon sampling and new protein markers of actin and elongation factor-1α. PLOS ONE 7: e29938. PMID: 22253832

Takashima, M., Sugita, T., Van, B. H., Nakamura, M., Endoh, R., and Ohkuma, M. 2012. Taxonomic richness of yeasts in Japan within subtropical and cool temperate areas. PLOS ONE 7: e50784. PMID: 23226383

Sato, H., Torimura, M., Kitahara, M.,Ohkuma, M., Hotta, Y., and Tamura, H. 2012. Characterization of the Lactobacillus casei group based on the profiling of ribosomal proteins coded in S10-spc-alpha operons as observed by MALDI-TOF MS. Syst. App. Microbiol. 35: 447-454. PMID: 23099260.

Katano, Y., Fujinami, S., Kawakoshi, A., Nakazawa, H., Oji, S., Iino, T., Oguchi, A., Ankai, A., Fukui, S., Terui, Y., Kamata, S., Harada, T., Tanikawa, S., Suzuki, K., and Fujita, N. 2012. Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T). Stand. Genomic Sci. 6: 406-414. PMID: 23408234.

Okuda, T., Ono, Y., Aoki, T., and Okada, G. 2012. The Mycological Society of Japan and the Melbourne Code. IMA Fungus 3: 48-52.

Enache, M., Popescu, G., Itoh, T., and Kamekura, M. 2012. Halophilic microorganisms from man-made and natural hypersaline environments: physiology, ecology, and biotechnological potential, In: Stan-Lotter, H. and Fendrihan, S. (eds.), Adaption of Microbial Life to Environmental Extremes, pp. 173-197, Springer-Verlag, Wien. DOI: 10.1007/978-3-211-99691-1_8.

Kudo, T. 2012. Herbidospora Kudo, Itoh, Miyadoh, Shomura and Seino 1993, 327VP, In: Goodfellow, M., Kampfer, P., Busse, H.-J., Trujillo, M. E., Suzuki, K., Ludwig, W., and Whitman, W. B. (eds.), Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 5, pp. 1827-1831, Springer, New York. DOI: 10.1002/9781118960608.gbm00199.

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2011

Todaka, T., Nakamura, R., Moriya, S., Ohkuma, M., Kudo, T., Takahashi, H., and Ishida, N. 2011. Screening of optimal cellulases from symbiotic protists of termites through expression in the secretory pathway of Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem. 75: 2260-2263. DOI: 10.1271/bbb.110490.

Kato, S., Itoh, T., and Yamagishi, A. 2011. Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes. FEMS Microbiol. Lett. 319: 34-43. PMID: 21410512.

Takeda, T., Yun, C.-S., Shintani, M., Yamane, H., and Nojiri, H. 2011. Distribution of genes encoding nucleoid-associated protein homologs in plasmids. Int. J. Evol. Biol. 2011: 685015. PMID: 21350637.

Namwong, S., Tanasupawat, S., Kudo, T., and Itoh, T. 2011. Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov., isolated from salt in Thai fish sauce. Int. J. Syst. Evol. Microbiol. 61: 231-236. PMID: 20207809.

Tanaka, N., Romanenko, L. A., Iino, T., Frolova, G. A., and Mikhailov, V. V. 2011. Cocleimonas flava gen. nov., sp. nov., a gammaproteobacterium isolated from sand snail (Umbonium costatum). Int. J. Syst. Evol. Microbiol. 61: 412-416. PMID: 20348322.

Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T. 2011. Agromyces tropicus sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61: 605-609. PMID: 20435752.

Moriya, T., Hikota, T., Yumoto, I., Ito, T., Terui, Y., Yamagishi, A., and Oshima, T. 2011. Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost. Int. J. Syst. Evol. Microbiol. 61: 631-636. PMID: 20400666.

Kitahara, M., Tsuchida, S., Kawasumi, K., Amao, H., Sakamoto, M., Benno, Y., and Ohkuma, M. 2011. Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. Int. J. Syst. Evol. Microbiol. 61: 877-881. PMID: 20495039.

Inoue, K, Itoh, T., Ohkuma, M., and Kogure, K. 2011. Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium. Int. J. Syst. Evol. Microbiol. 61: 942-946. PMID: 20495022.

Péter, G., Dlauchy, D., Tornai-Lehoczki, J., Suzuki, M., and Kurtzman, C. P. 2011. Spencermartinsiella europaea gen. nov., sp. nov., a new member of the family Trichomonascaceae. Int. J. Syst. Evol. Microbiol. 61: 993-1000. PMID: 20435745.

Shibazaki, A., Omoto, Y., Kudo, T., Yaguchi, T., Saito, A., Ando, A., Mikami, Y., and Gonoi, T. 2011. Streptomyces coacervatus sp. nov., isolated from the intestinal tract of Armadillidium vulgare. Int. J. Syst. Evol. Microbiol. 61: 1073-1077. PMID: 20525817.

Songsumanus, A., Tanasupawat, S., Thawai, C., Suwanborirux, K., and Kudo, T. 2011. Micromonospora humi sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. 61: 1176-1181. PMID: 20562246.

Itoh, T., Yamanoi, K., Kudo, T., and Takashina, T. 2011. Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field. Int. J. Syst. Evol. Microbiol. 61: 1281-1285. PMID: 20639230.

Kawasaki, S., Kurosawa, K., Miyazaki, M., Yagi, C., Kitajima, Y., Tanaka, S., Irisawa, T., Okada, S., Sakamoto, M., Ohkuma, M., and Niimura, Y. 2011. Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. 61: 1356-1359. PMID: 20601482.

Cai, Y., Yang, J., Pang, H., and Kitahara, M. 2011. Lactococcus fujiensis sp. nov., a lactic acid bacterium isolated from vegetable matter. Int. J. Syst. Evol. Microbiol. 61: 1590-1594. PMID: 20675438.

Takashima, M., Van, B. H., An, K.-D., and Ohkuma, M. 2011. Dioszegia rishiriensis sp. nov., a novel yeast species from soil collected on Rishiri Island, Hokkaido, Japan. Int. J. Syst. Evol. Microbiol. 61: 1736-1739. PMID: 20656806.

Promnuan, Y., Kudo, T., Ohkuma, M., and Chantawannakul, P. 2011. Actinomadura apis sp. nov., isolated from a honey bee (Apis mellifera) hive, and the reclassification of Actinomadura cremea subsp. rifamycini Gauze et al. 1987 as Actinomadura rifamycini (Gauze et al. 1987) sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 61: 2271-2277. PMID: 20952541.

Thawai, C., Tanasupawat, S., Kudo, T. 2011. Dactylosporangium tropicum sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61: 2358-2362. PMID: 21037030.

Kawasaki, S., Kurosawa, K., Miyazaki, M., Sakamoto, M., Ohkuma, M., Niimura, Y. 2011. Lactobacillus ozensis sp. nov., isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. 61: 2435-2438. PMID: 21075903.

Morita, T., Ogura, Y., Takashima, M., Hirose, N., Fukuoka, T., Imura, T., Kondo, Y., and Kitamoto, D. 2011. Isolation of Pseudozyma churashimaensis sp. nov., a novel ustilaginomycetous yeast species as a producer of glycolipid biosurfactants, mannosylerythritol lipds. J. Biosci. Bioeng. 112: 137-144. PMID: 21606002.

Hamana, K., Hayashi, H., Niitsu, M., Sugata, D., Higuchi, K., and Itoh, T. 2011. Cellular distribution of unusual long linear and branched polyamines within the newly validated thermophiles belonging to the bacterial orders Thermoanaerobacterales and Clostridiales. -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VI-. J. Jpn. Soc. Extremophiles 10: 83-89.

Park, S., Yokota, A., Itoh, T., and Park, J.-S. 2011. Sphingomonas jejuensis sp. nov., isolated from marine sponge Hymeniacidon flavia. J. Microbiol. 49: 238-242. PMID: 21538244.

Odamaki, T., Yonezawa, S., Kitahara, M., Sugahara, Y., Xiao, J.-Z., Yaeshima, T., Iwatsuki, K., and Ohkuma, M. 2011. Novel multiplex polymerase chain reaction primer set for identification of Lactococcus species. Lett. Appl. Microbiol. 52: 491-496. PMID: 21299580.

Shintani, M., Horisaki, T., Yamane, H., Ohkuma, M., and Nojiri, H. 2011. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Psudomonas fluorescens Pf0-1 in artificial water microcosms. Microbiology 157: 2276-2286. PMID: 21565929.

Sakamoto, M. and Ohkuma, M. 2011. Identification and classification of the genus Bacteroides by multilocus sequence analysis. Microbiology 157: 3388-3397. PMID: 21948050.

Shintani, M., Matsumoto, T., Yoshikawa, H., Yamane, H., Ohkuma, M., and Nojiri, H. 2011. DNA rearrangement has occured in the carbazole degradative plasmid pCAR1 and the chromosome of its unsuitable plasmid host, Pseudomonas fluorescens Pf0-1. Microbiology 157: 3405-3416. PMID: 21948045.

Endoh, R., Suzuki, M., Okada, G., Takeuchi, Y., and Futai, K. 2011. Fungus symbionts colonizing the galleries of the ambrosia beetle Platypus quercivorus. Mirob. Ecol. 62: 106-120. PMID: 21384214.

Gams, W., Jaklitsch, W., and 77 signatories. 2011. Fungal nomenclature 3. A critical response to the ‘Amsterdam Declaration’. Mycotaxon 116: 501-512. DOI: 10.5248/116.501.

Crous, P. W., Groenewald, J. Z., Shivas, R. G., Edwards, J., Seifert, K. A., Alfenas, A. C., Alfenas, R. F., Burgess, T. I., Carnegie, A. J., Hardy, G. E. St. J., Hiscock, N., Huberli, D., Jung, T., Louis-Seize, G., Okada, G., Pereira, O. L., Stukely, M. J. C., Wang, W., White, G. P., Young, A. J., McTaggart, A. R., Pascoe, I. G., Porter, I. J., and Quaedvlieg, W. 2011. Fungal Planet description sheets: 69-91. Persoonia 26: 108-156. PMID: 22025808.

Shintani, M., Tokumaru, H., Takahashi, Y., Miyakoshi, M., Yamane, H., Nishida, H., and Nojiri, H. 2011. Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria. Plasmid 66: 85-92. PMID: 21708189.

Sugita, T., Tajima, M., Tsubuku, H., Miyamoto, M., Zhang, E., Tsuboi, R., Takashima, M., Ishibashi, Y., and Nishikawa, A. 2011. Malasseizia, In: Liu, D. (ed.), Molecular Detection of Human Fungal Pathogens, pp. 643-651, CRC Press, New York.

Sugita, T., Ikeda, R., Nishikawa, A., Takashima, M., Mekha, N., Poonwan, N., Kalkanci, A., and Kustimur, S. 2011. Trichosporon, In: Liu, D. (ed.), Molecular Detection of Human Fungal Pathogens, pp. 681-686, CRC Press, New York.

Seifert, K. and Okada, G. 2011. Keys: Synnematous hyphomycete genera, In: Seifert, K., Morgan-Jones, G., Gams, W., and Kendrick, B. (eds.), The Genera of Hyphomycetes, pp. 929-940, CBS-KNAW Fungal Biodiversity Centre, Utrecht, Netherlands.

Takashima, M. and Nakase, T. 2011. Dioszegia Zsolt emend. Takashima, Deak & Nakase (2001), In: Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts a Taxonomic Study, pp. 1747-1757, Elsevier, San Diego.

Takashima, M. and Nakase, T. 2011. Kockovaella Nakase, Banno & Yamada (1991), In: Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts a Taxonomic Study, pp. 1781-1794, Elsevier, San Diego.

Takashima, M. and Nakase, T. 2011. Udeniomyces Nakase & Takematsu (1992), In: Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts a Taxonomic Study, pp. 2063-2068, Elsevier, San Diego.

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2010

Morita, T., Takashima, M., Fukuoka, T., Konishi, M., Imura, T., and Kitamoto, D. 2010. Isolation of basidiomycetous yeast Pseudozyma tsukubaensis and production of glycolipid biosurfactant, a diastereomer type of mannosylerythritol lipid-B. Appl. Microbiol. Biotechnol. 88: 679-688. PMID: 20652239.

Yamagishi, A., Yokobori, S., Yoshimura, Y., Yamashita, M., Hashimoto, H., Kubota, T., Yano, H., Haruyama, J., Tabata, M., Kobayashi, K., Honda, H., Utsumi, Y., Saiki, T., Itoh, T., Miyakawa, A., Hamase, K., Naganuma, T., Mita, H., Tonokura, K., Sasaki, S., and Miyamoto, H. 2010. Japan Astrobiology Mars Project (JAMP): Search for microbes on the Mars surface with special interest in methane-oxidizing bacteria. Biol. Sci. Space 24: 67-82. DOI: 10.2187/bss.24.67.

Nakazawa, Y., Suzuki, R., Uchino, M., Sagane, Y., Kudo, T., Nagai, T., Sato, H., and Takano, K. 2010. Identification of actinomycetes producing phospholipase D with high transphosphatidylation activity. Curr. Microbiol. 60: 365-372. PMID: 19937030.

Kitahara, M., Sakamoto, M., and Benno, Y. 2010. Lactobacillus similis sp. nov., isolated from fermented cane molasses. Int. J. Syst. Evol. Microbiol. 60: 187-190. PMID: 19648343.

Sakamoto, M., Suzuki, N., and Okamoto, M. 2010. Prevotella aurantiaca sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 60: 500-503. PMID: 19654360.

Tanasupawat, S., Jongrungruangchok, S., and Kudo, T. 2010. Micromonospora marina sp. nov., isolated from sea sand. Int. J. Syst. Evol. Microbiol. 60: 648-652. PMID: 19656925.

Yang, Y., Itoh, T., Yokobori, S., Shimada, H., Itahashi, S., Satoh, K., Ohba, H., Narumi, I., and Yamagishi, A. 2010. Deinococcus aetherius sp. nov., isolated from the stratosphere. Int. J. Syst. Evol. Microbiol. 60: 776-779. PMID: 19656935.

Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T. 2010. Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra). Int. J. Syst. Evol. Microbiol. 60: 944-948. PMID: 19661518.

Burns, D. G., Janssen, P. H., Itoh, T., Minegishi, H., Usami, R., Kamekura, M., and Dyall-Smith, M. L. 2010. Natronomonas moolapensis sp. nov., non-alkaliphilic isolates recovered from a solar saltern crystallizer pond, and emended description of the genus Natronomonas. Int. J. Syst. Evol. Microbiol. 60: 1173-1176. PMID: 19667395.

Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Echigo, A., and Dyall-Smith, M. L. 2010. Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer. Int. J. Syst. Evol. Microbiol. 60: 1196-1199. PMID: 19667389.

Vishniac, H. S. and Takashima, M. 2010. Rhodotorula arctica sp. nov., a basidiomycetous yeast from Arctic soil. Int. J. Syst. Evol. Microbiol. 60: 1215-1218. PMID: 19666804.

Iino, T., Mori, K., Uchino, Y., Nakagawa, T., Harayama, S., and Suzuki, K. 2010. Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. 60: 1376-1382. PMID: 19671715.

Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T. 2010. Actinaurispora siamensis gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int. J. Syst. Evol. Microbiol. 60: 1660-1666. PMID: 19734290.

Jin, J.-S., Kitahara, M., Sakamoto, M., Hattori, M., and Benno, Y. 2010. Slackia equolifaciens sp. nov., a human intestinal bacterium capable of producing equol. Int. J. Syst. Evol. Microbiol. 60: 1721-1724. PMID: 19734283.

Minegishi, H., Kamekura, M., Itoh, T., Echigo, A., Usami, R., and Hashimoto, T. 2010. Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B’ (rpoB’) gene. Int. J. Syst. Evol. Microbiol. 60: 2398-2408. PMID: 19946058.

Endo, A., Futagawa-Endo, Y., Sakamoto, M., Kitahara, M., and Dicks, L. M. T. 2010. Lactobacillus florum sp. nov., a fructophilic species isolated from flowers. Int. J. Syst. Evol. Microbiol. 60: 2478-2482. PMID: 19965998.

Iino, T., Mori, K., and Suzuki, K. 2010. Methanospirillum lacunae sp. nov., a methane-producing archaeon isolated from a puddly soil, and emended descriptions of the genus Methanospirillum and Methanospirillum hungatei. Int. J. Syst. Evol. Microbiol. 60: 2563-2566. PMID: 20008107.

Sakamoto, M., Suzuki, N., and Benno, Y. 2010. hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes. Int. J. Syst. Evol. Microbiol. 60: 2984-2990. PMID: 20118288.

Sugiyama, Y., Oya, A., Kudo, T., and Hirota, A. 2010. Surugapyrone A from Streptomyces coelicoflavus strain USF-6280 as a new DPPH radical-scavenger. J. Antibiot. 63: 365-369. PMID: 20588303.

Nakase, T., Imanishi, Y., Ninomiya, S., and Takashima, M. 2010. Candida rishirensis sp. nov., a novel methylotrophic anamorphic yeast species isolated from soil on Rishiri Island in Japan. J. Gen. Appl. Microbiol. 56: 169-173. PMID: 20513965.

Suzuki, R., Zhang, Y., Iino, T., Kosako, Y., Komagata, K., and Uchimura, T. 2010. Asaia astilbes sp. nov., Asaia platycodi sp. nov., and Asaia prunellae sp. nov., novel acetic acid bacteria isolated from flowers in Japan. J. Gen. Appl. Microbiol. 56: 339-346. PMID: 20953098.

Tanasupawat, S., Chamroensaksri, N., Kudo, T., and Itoh, T. 2010. Identification of moderately halophilic bacteria from Thai fermented fish (pla-ra) and proposal of Virgibacillus siamensis sp. nov. J. Gen. Appl. Microbiol. 56: 369-379. PMID: 21099133.

Sakamoto, M. and Ohkuma, M. 2010. Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods. J. Med. Microbiol. 59: 1293-1302. PMID: 20671088.

Koyanagi, T., Sakamoto, M., Takeuchi, Y., Ohkuma, M., and Izumi, Y. 2010. Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library. J. Oral Microbiol. 2: 5104. PMID: 21523229.

Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S. 2010. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. 666: 71-85. PMID: 20717779.

Kurtzman, C. P. and Suzuki, M. 2010. Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces and Scheffersomyces. Mycoscience 51: 2-14. DOI: 10.1007/s10267-009-0011-5.

Yamazaki, Y., Akashi, R., Banno, Y., Endo, T., Ezura, H., Fukami-Kobayashi, K., Inaba, K., Isa, T., Kamei, K., Kasai, F., Kobayashi, M., Kurata, N., Kusaba, M., Matuzawa, T., Mitani, S., Nakamura, T., Nakamura, Y., Nakatsuji, N., Naruse, K., Niki, H., Nitasaka, E., Obata, Y., Okamoto, H., Okuma, M., Sato, K., Serikawa, T., Shiroishi, T., Sugawara, H., Urushibara, H., Yamamoto, M., Yaoita, Y., Yoshiki, A., and Kohara, Y. 2010. NBRP databases: databases of biological resources in Japan. Nuleic Acids Res. 38: D26-D32. PMID: 19934255.

Todaka, N., Inoue, T., Saita, K., Ohkuma, M., Nalepa, C., A., Lenz, M., Kudo, T., and Moriya, S. 2010. Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach. PLOS ONE 5: e8636. PMID: 20072608.

Obata, T., Goto, Y., Kunisawa, J., Sato, S., Sakamoto, M., Setoyama, H., Matsuki, T., Nonaka, K., Shibata, N., Gohda, M., Kagiyama, Y., Nochi, T., Yuki, Y., Fukuyama, Y., Mukai, A., Shinzaki, S., Fujihashi, K., Sasakawa, C., Iijima, H., Goto, M., Umesaki, Y., Benno, Y., and Kiyono, H. 2010. Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis. Proc. Natl. Acad. Sci. USA 107: 7419-7424. PMID: 20360558.

Bonfante, P., Visick, K., and Ohkuma, M. 2010. Symbiosis in the omics era. Environ. Microbiol. Rept. 2: 475-478.

Seifert, K. and Okada, G. 2010. International Commission on the Taxonomy of Fungi (ICTF). IMA Fungus 1: 11-12.

Okabe, S., Oshiki, M., Kamagata, Y., Yamaguchi, N., Toyofuku, M., Yawata, Y., Tashiro, Y., Nomura, N., Ohta, H., Ohkuma, M., Hiraishi, A., and Minamisawa, K. 2010. A great leap forward in microbial ecology. Microbes Environ. 25: 230-240. PMID: 21576878.

Shintani, M., Takahashi, Y., Yamane, H., and Nojiri, H. 2010. The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microbes Environ. 25: 253-265. PMID: 21576880.

Sakamoto, M., Tanner, A. C. R, and Benno, Y. 2010. Tannerella Sakamoto, Suzuki, Umeda, Ishikawa and Benno 2002, 848VP, In: Krieg, N. R., Staley, J. T., Brown, D. R., Hedlund, B. P., Paster, B. J., Ward, N. L., Ludwig, W., and Whitman, W. B. (eds.), Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 4, pp. 78-85, Springer, New York.

Ohkuma, M. and Brune, A. 2010. Diversity, structure, and evolution of the termite gut microbial community, In: Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 413-438, Springer Science+Business Media, Dordrecht.

Brune, A. and Ohkuma, M. 2010. Role of the termite gut-microbiota in symbiotic digestion, In: Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 439-475, Springer Science+Business Media, Dordrecht.

Hongo, Y. and Ohkuma, M. 2010. Termite gut flagellates and their methanogenic and eubacterial symbionts, In: Hackstein, J. H. P. (ed.), Microbiology Monographs, vol. 19, (Endo)symbiotic Methanogenic Archaea, pp. 55-79, Springer-Verlag, Berlin.

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2009

Noda, S., Hongoh, Y., Sato, T., and Ohkuma, M. 2009. Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites. BMC Evol. Biol. 9: 158. PMID: 19586555.

Kajiura, T., Takeda, T., Sakata, S., Sakamoto, M., Hashimoto, M., Suzuki, H., Suzuki, M., and Benno, Y. 2009. Change of intestinal microbiota with elemental diet and its impact on therapeutic effects in a murine model of chronic colitis. Dig. Dis. Sci. 54: 1892-1900. PMID: 19058004.

Sato, T., Hongoh, Y., Noda, S., Hattori, S., Ui, S., and Ohkuma, M. 2009. Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. Environ. Microbiol. 11: 1007-1015. PMID: 19170725.

Takashima, M., Sugita, T., Toriumi, Y., and Nakase, T. 2009. Cryptococcus tepidarius sp. nov., a thermotolerant yeast species isolated from a stream from a hot-spring area in Japan. Int. J. Syst. Evol. Microbiol. 59: 181-185. PMID: 19126744.

Sakamoto, M., Kumada, H., Hamada, N., Takahashi, Y., Okamoto, M., Bakir, M. A., and Benno, Y. 2009. Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque. Int. J. Syst. Evol. Microbiol. 59: 319-322. PMID: 19196771.

Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T. 2009. Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. 59: 880-885. PMID: 19329624.

Sakamoto, M., Takagaki, A., Matsumoto, K., Kato, Y., Goto, K., and Benno, Y. 2009. Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family ‘Porphyromonadaceae‘ isolated from rat faeces. Int. J. Syst. Evol. Microbiol. 59: 1748-1753. PMID: 19542124.

Yang, Y., Itoh, T., Yokobori, S., Itahashi, S., Shimada, H., Satoh, K., Ohba, Hirofumi, Narumi, I., and Yamagishi, A. 2009. Deinococcus aerius sp. nov., isolated from the high atmosphere. Int. J. Syst. Evol. Microbiol. 59: 1862-1866. PMID: 19567578.

Sakamoto, M., Suzuki, N., Matsunaga, N., Koshihara, K., Seki, M., Komiya, H., and Benno, Y. 2009. Parabacteroides gordonii sp. nov., isolated from human blood cultures. Int. J. Syst. Evol. Microbiol. 59: 2843-2847. PMID: 19628614.

Sakamoto, M., Siqueira, J. F., Jr., Rôças, I. N., and Benno, Y. 2009. Diversity of spirochetes in endodontic infections. J. Clin. Microbiol. 47: 1352-1357. PMID: 19261792.

Mayanagi, G., Kimura, M., Nakaya, S., Hirata, H., Sakamoto, M., Benno, Y., and Shimauchi, H. 2009. Probiotic effects of orally administered Lactobacillus salivarius WB21-containing tablets on periodontopathic bacteria: a double-blinded, placebo-controlled, randomized clinical trial. J. Clin. Periodontol. 36: 506-513. PMID: 19453574.

Yang, X., Sugita, T., Takashima, M., Hiruma, M., Li, R., Sudo, H., Ogawa, H., and Ikeda, S. 2009. Differentiation of Trichophyton rubrum clinical isolates from Japanese and Chinese patients by randomly amplified polymorphic DNA and DNA sequence analysis of the non-transcribed spacer region of the rRNA gene. J. Dermatol. Sci. 54: 38-42. PMID: 19162448.

Li, B., Furihata, K., Kudo, T., and Yokota, A. 2009. Kitasatospora saccharophila sp. nov. and Kitasatospora kazusanensis sp. nov., isolated from soil and transfer of Streptomyces atroaurantiacus to the genus Kitasatospora as Kitasatospora atroaurantiaca comb. nov. J. Gen. Appl. Microbiol. 55: 19-26. PMID: 19282629.

Hamana, K., Hayashi, H., Niitsu, M., and Itoh, T. 2009. Polyamine analysis of thermophilic, acidophilic, alkaliphilic and radio-tolerant bacteria belonging to the domain Bacteria and methanogens, thermophiles and extreme halophiles belonging to the domain Archaea -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles IV-. J. Jpn. Soc. Extremophiles 8: 59-68.

Sugiyama, Y., Ito, Y., Suzuki, M., and Hirota, A. 2009. Indole derivatives from a marine sponge-derived yeast as DPPH radical scavengers. J. Nat. Prod. 72: 2069-2071. PMID: 19943625.

Matsumoto, M., Sakamoto, M., and Benno, Y. 2009. Dynamics of fecal microbiota in hospitalized elderly fed probiotic LKM512 yogurt. Microbiol. Immunol. 53: 421-432. PMID: 19659926.

Noda, S., Mantini, C., Bordereau, C., Kitade, O., Dolan, M. F., Viscogliosi, E., and Ohkuma, M. 2009. Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution. Mol. Phylogenet. Evol. 52: 217-224. PMID: 19306937.

Yoshinari, S., Shiba, T., Inaoka, D., Itoh, T., Kurisu, G., Harada, S., Kita, K., and Watanabe, Y. 2009. Functional importance of Crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease. Nucleic Acids Res. 37: 4787-4798. PMID: 19515941.

Mantini, C., Dalia-Cornette, J., Noda, S., Van, Der, Heijden, H. M. J. F., Capron, M., Dei-Cas, E., Landman, W. J. M., Ohkuma, M., and Viscogliosi, E. 2009. Molecular identification and phylogenetic relationships of trichomonad isolates of galliform birds inferred from nuclear small subunit rRNA gene sequences. Parasitol. Res. 106: 163-170. PMID: 19806364.

Atsumi, H., Yoshimoto, K., Saito, S., Ohkuma, M., Maeda, M., and Nagasaki, Y. 2009. Luminescence-based colorimetric discrimination of single-nucleotide transversions by the combined use of the derivatives of DOTA-conjugated naphthyridine and its terbium complex. Tetrahedron Lett. 50: 2177-2180.

Promnuan, Y., Kudo, T., and Chantawannakul, P. 2009. Actinomycetes isolated from beehives in Thailand. World J. Microbiol. Biotechnol. 25: 1685-1689.

Okada, G. 2009. Online manuscript submission for Mycoscience using Editorial Manager. Mycoscience 50: 83.

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