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RIKEN BioResource Research Center - Japan Collection of Microorganisms
JCM Mail News (2024.11.07)
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RIKEN BioResource Research Center - Japan Collection of Microorganisms
(JCM) is pleased to update you with the latest information.
======= Contents =====================================================
- Special topic: Yeasts isolated from natural environments in
Rishiri & Iriomote Islands, Japan
- "JCM BLAST Search" released
- Newly cataloged strains (2024.7.01 - 2024.10.31)
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Special topic: Yeasts isolated from natural environments in
Rishiri & Iriomote Islands, Japan
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A series of 916 yeast strains isolated from natural environments in
Rishiri & Iriomote Islands, Japan, in the course of exploration of
yeast species richness was deposited and stocked in JCM. The yeast
strains consist of more than 150 species, almost half of which were
undescribed species at the time of the research project, representing
taxonomic richness of yeasts inhabiting in Japan (Takashima et al., 2012).
The yeast strain series includes high lipid producers, so called
oleaginous yeasts (Tanimura et al., 2014a), some of which have unique
characteristics for applications. For example, Solicoccozyma terricola
(JCM 24514 and others; former name, Cryptococcus terricola) and
Cystobasidium iriomotense (JCM 24594T and others) have abilities to
produce lipids from soluble starch and from mixture of glucose and
xylose, respectively (Tanimura et al., 2014b, 2018).
The series is a promising screening source for further applications
with unique characteristics. In addition, they would be utilized for
basic research in the fields of yeast taxonomic study and species
diversity in nature.
List of yeast strains isolated from Rishiri and Iriomote Islands is
detailed in a webpage (https://www.jcm.riken.jp/cgi-bin/jcm/rishiri_iriomote).
Please contact us (inquiry.jcm@riken.jp) with user instructions
(https://jcm.brc.riken.jp/en/ordering_e).
We welcome your request for distribution.
References
Takashima, M., Sugita, T., Van, B. H., Nakamura, M., Endoh, R.
and Ohkuma, M.
Taxonomic richness of yeasts in Japan within subtropical and cool
temperate areas.
PLOS ONE 7: e50784, 2012.
PMID: 23226383.
DOI: 10.1371/journal.pone.0050784.
Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M.,
Yamaguchi, S., Sakuradani, E., Ogawa, J. and Shima, J.
Selection of oleaginous yeasts with high lipid productivity for
practical biodiesel production.
Bioresour. Technol. 153: 230-235, 2014a.
PMID: 24368271.
DOI: 10.1016/j.biortech.2013.11.086.
Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M.,
Yamaguchi, S., Sakuradani, E., Ogawa, J., Ohkuma, M. and Shima, J.
Cryptococcus terricola is a promising oleaginous yeast for
biodiesel production from starch through consolidated bioprocessing.
Sci. Rep. 4: 4776, 2014b.
PMID: 24758986.
DOI: 10.1038/srep04776.
Tanimura, A., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S.,
Ogawa, J., Shima, J. and Takashima, M.
Lipid production via simultaneous conversion of glucose and xylose by
a novel yeast, Cystobasidium iriomotense.
PLOS ONE 13: e0202164, 2018.
PMID: 30208038.
DOI: 10.1371/journal.pone.0202164.
Rikiya Endoh, curator of yeasts and yeast-like alga
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"JCM BLAST Search" released
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"JCM BLAST search" is now available. This feature allows you to search
for JCM strains (or equivalent strains) with genome sequences
homologous to your query sequence. At the present version, only
prokaryotic strains are included.
JCM BLAST search
https://www.jcm.riken.jp/JCM/jcmblast/en/
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Newly cataloged strains (2024.07.01 - 2024.10.31)
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Bacteria
"Absicoccus intestinalis" JCM 37183 Proposed type strain
Acidihalobacter sp. JCM 30070
"Adlercreutzia murintestinalis" JCM 37185 Proposed type strain
Adlercreutzia wanghongyangiae JCM 37067 Type strain
Agromyces chromiiresistens JCM 36199 Type strain
"Aliirhizobium terrae" JCM 35482 Proposed type strain
"Alistipes muris" JCM 37184 Proposed type strain
"Alkalihalobacterium chitinilyticum" JCM 35078 Proposed type strain
Amycolatopsis carbonis JCM 30563 Type strain
Amycolatopsis cynarae JCM 35980 Type strain
Amycolatopsis nalaikhensis JCM 30462 Type strain
Ancylobacter mangrovi JCM 34924 Type strain
Aquirufa regiilacus JCM 36347 Type strain
Aquirufa regiilacus JCM 36348
Arthrobacter horti JCM 36483 Type strain
"Atrimonas thermophila" JCM 39389 Proposed type strain
Azoarcus sp. JCM 37161
"Bartonella apihabitans" JCM 35029 Proposed type strain
"Bartonella choladocola" JCM 35030 Proposed type strain
Biformimicrobium ophioploci JCM 36221 Type strain
Blautia celeris JCM 37065 Type strain
Blautia intestinalis JCM 37171 Type strain
Blautia parvula JCM 37149 Type strain
"Bovifimicola ammoniilytica" JCM 37190 Proposed type strain
"Carboxydochorda subterranea" JCM 39509 Proposed type strain
Chitinophaga pollutisoli JCM 36644 Type strain
Clostridium lamae JCM 35704 Type strain
Companilactobacillus muriivasis JCM 35891 Type strain
Coprococcus hominis JCM 37066 Type strain
Corynebacterium antarcticum JCM 37218 Type strain
Dolosigranulum savutiense JCM 36673 Type strain
Faecalibacterium taiwanense JCM 39529 Type strain
"Flavobacterium agricola" JCM 34764 Proposed type strain
Flavobacterium panacagri JCM 36132 Type strain
Flavobacterium psychrotrophum JCM 32889 Type strain
Frateuria aurantia JCM 25126
Frateuria aurantia JCM 25127
Frateuria aurantia JCM 25129
Frateuria aurantia JCM 25130
Frateuria aurantia JCM 25131
Frateuria aurantia JCM 25132
Frateuria aurantia JCM 25133
Frateuria aurantia JCM 25134
Frateuria aurantia JCM 25135
Frateuria aurantia JCM 25136
Frateuria aurantia JCM 25137
Frateuria aurantia JCM 25138
Frateuria aurantia JCM 25139
Frateuria aurantia JCM 25140
Frateuria aurantia JCM 25141
"Geochorda subterranea" JCM 39508 Proposed type strain
Gilvirhabdus luticola JCM 36595 Type strain
"Grylomicrobium aquisgranensis" JCM 37182 Proposed type strain
"Halalkalibacter alkaliphilus" JCM 34004 Proposed type strain
"Hymenobacter knuensis" JCM 31814 Proposed type strain
"Intestinicryptomonas porci" JCM 37181 Proposed type strain
Lacrimispora brassicae JCM 32810 Type strain
Lacticaseibacillus casei JCM 37179
Lacticaseibacillus salsurivasis JCM 35890 Type strain
Lactiplantibacillus plantarum JCM 37178
Limosilactobacillus fermentum JCM 37180
"Mangrovimicrobium sediminis" JCM 32136 Proposed type strain
"Marinobacter apostichopi" JCM 36175 Proposed type strain
"Massilioclostridium coli" JCM 37075 Proposed type strain
Metabacillus arenae JCM 34523 Type strain
Metabacillus sp. JCM 35039
"Methylobacter svalbardensis" JCM 39463 Proposed type strain
Nocardia endophytica JCM 37298 Type strain
"Nocardioides bruguierae" JCM 34554 Proposed type strain
Nocardioides renjunii JCM 33792 Type strain
Nocardioides turkmenicus JCM 33525 Type strain
"Novosphingobium album" JCM 36177 Proposed type strain
"Paracraurococcus lichenis" JCM 33121 Proposed type strain
Paraflavitalea pollutisoli JCM 36460 Type strain
Paraglaciecola algarum JCM 34972 Type strain
Paralimibaculum aggregatum JCM 36220 Type strain
"Parasutterella muris" JCM 37186 Proposed type strain
Pedobacter faecalis JCM 36003 Type strain
"Petralouisia muris" JCM 37187 Proposed type strain
Planococcus liqunii JCM 36226 Type strain
Planococcus shenhongbingii JCM 36224 Type strain
Planococcus shixiaomingii JCM 36225 Type strain
Pollutibacter soli JCM 36462 Type strain
Polluticoccus soli JCM 36463 Type strain
"Porcipelethomonas ammoniilytica" JCM 37191 Proposed type strain
"Pseudoalteromonas apostichopi" JCM 36173 Proposed type strain
Pseudomonas beijingensis JCM 35689 Type strain
Pseudomonas paeninsulae JCM 36637 Type strain
Pseudomonas svalbardensis JCM 36638 Type strain
Pseudonocardia lacus JCM 34851 Type strain
Psychrosphaera algicola JCM 34971 Type strain
"Reichenbachiella agarivorans" JCM 35840 Proposed type strain
"Reichenbachiella carrageenanivorans" JCM 35841 Proposed type strain
"Reichenbachiella ulvae" JCM 35839 Proposed type strain
Saccharopolyspora soli JCM 33912 Type strain
Salinibacterium metalliresistens JCM 36200 Type strain
Salinibacterium soli JCM 36421 Type strain
"Senimuribacter intestinalis" JCM 37188 Proposed type strain
Sphaerotilus microaerophilus JCM 35424 Type strain
Sphingobacterium luzhongxinii JCM 33886 Type strain
Sphingobacterium tenebrionis JCM 36663 Type strain
Sphingobacterium zhuxiongii JCM 33600 Type strain
Sphingobium arseniciresistens JCM 36467 Type strain
Sphingomonas endolithica JCM 35386 Type strain
Sphingomonas pollutisoli JCM 36466 Type strain
"Streptococcus nakanoensis" JCM 35953 Proposed type strain
Streptomyces camelliae JCM 35918 Type strain
Streptomyces cathayae JCM 36055 Type strain
Streptomyces luomodiensis JCM 36555 Type strain
"Streptomyces yongxingensis" JCM 34965
Tepidibacillus marianensis JCM 39431 Type strain
Thalassotalea nanhaiensis JCM 33808 Type strain
"Thermatribacter velox" JCM 39351 Proposed type strain
"Thiobacillus sedimenti" JCM 39443 Proposed type strain
Thiopseudomonas acetoxidans JCM 35747 Type strain
"Tomitella fengzijianii" JCM 33467 Proposed type strain
"Tomitella gaofuii" JCM 34231 Proposed type strain
Unidentified bacterium JCM 39386
Unidentified bacterium JCM 39387
Vagococcus jeotgali JCM 35937 Type strain
Variovorax sp. JCM 37046
"Vibrio apostichopi" JCM 36174 Proposed type strain
Archaea
Halomarina halobia JCM 34147 Type strain
Halomarina litorea JCM 34908 Type strain
Halomarina ordinaria JCM 34148 Type strain
Halomarina pelagica JCM 34910 Type strain
"Ignisphaera cupida" JCM 39446 Proposed type strain
"Methanimicrococcus hacksteinii" JCM 39383 Proposed type strain
"Methanimicrococcus hongohii" JCM 39385 Proposed type strain
"Methanimicrococcus stummii" JCM 39384 Proposed type strain
Methanobrevibacter curvatus JCM 39452 Type strain
"Methanolapillus africanus" JCM 39381 Proposed type strain
"Methanolapillus millepedarum" JCM 39380 Proposed type strain
"Methanolapillus ohkumae" JCM 39382 Proposed type strain
Promethearchaeum syntrophicum JCM 39240 Type strain
Fungi
Asterotremella albida JCM 24503
Begerowomyces aurantius JCM 33898
Cryptococcus sp. JCM 24502
Cryptococcus sp. JCM 24506
Cryptococcus sp. JCM 24507
Cryptococcus sp. JCM 24511
Hannaella higashiohmiensis JCM 24969
Hannaella higashiohmiensis JCM 25812
Hannaella higashiohmiensis JCM 25820
Kalmanozyma fusiformata JCM 24912
Kalmanozyma fusiformata JCM 25725
Kalmanozyma fusiformata JCM 25775
Kalmanozyma fusiformata JCM 25781
Kalmanozyma fusiformata JCM 25789
Ogataea sp. JCM 24526
Papiliotrema flavescens JCM 25798
Papiliotrema flavescens JCM 25823
Papiliotrema flavescens JCM 25885
Pichia membranifaciens JCM 28210
Rhodotorula sp. JCM 24513
Robbauera albescens JCM 28604
Saitozyma podzolica JCM 24505
Saitozyma podzolica JCM 24508
Saitozyma podzolica JCM 24510
Solicoccozyma terricola JCM 24514
Solicoccozyma terricola JCM 24515
Solicoccozyma terricola JCM 24516
Solicoccozyma terricola JCM 24517
Solicoccozyma terricola JCM 24518
Solicoccozyma terricola JCM 24519
Solicoccozyma terricola JCM 24520
Solicoccozyma terricola JCM 24521
Solicoccozyma terricola JCM 24522
Solicoccozyma terricola JCM 24523
Solicoccozyma terricola JCM 28240
Spencermartinsiella japonica JCM 35525
Spencermartinsiella japonica JCM 35526
Yamadazyma thunbergiae JCM 36746
Yamadazyma thunbergiae JCM 36749
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Microbe Division / Japan Collection of Microorganisms
RIKEN BioResource Research Center
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2024.11.07
