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RIKEN BioResource Research Center - Japan Collection of Microorganisms
JCM Mail News (2023.12.07)
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RIKEN BioResource Research Center - Japan Collection of Microorganisms
(JCM) is pleased to update you with the latest information.
======= Contents =====================================================
- Special topic: Methanogenic archaea: list of the JCM strains and a
recipe for the preparation of anaerobic culture media
are released.
- Official X account of JCM and BRC
- Newly cataloged strains (2023.05.01 - 2023.11.30)
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Special topic: Methanogenic archaea: list of the JCM strains and a
recipe for the preparation of anaerobic culture media
are released.
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Methanogenic archaea are strict anaerobes that grow on limited
substrates, such as CO2 and H2, formate, methanol and/or acetate,
coupled with methane production. Currently all cultivated species
belong to the phylum Methanobacteriota (formerly known as Euryarchaeota).
They are quite physiologically diverse, and widespread in natural and
anthropogenic anoxic habitats. Methane is known as the most important
greenhouse gas after CO2, and a large part of the atmospheric methane
comes from the methanogenesis. Meanwhile, methanogens are major
players in anaerobic digesters, working together with other anaerobic
microorganisms to break down organic waste and produce
methane-containing biogas.
Recently, JCM has released a list of the methanogenic archaeal strains
available from JCM and a recipe for the preparation of anaerobic
culture media to cultivate methanogens and other strictly anaerobic
microorganisms:
List of strains (methanogens)
https://www.jcm.riken.jp/JCM/list/methanogen.php
Preparation of anaerobic culture media:
https://jcm.brc.riken.jp/en/archaea_protocol_e
Takashi Itoh, Shingo Kato (Curators of Archaea and bacterial extremophiles)
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Official X account of JCM and BRC
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The JCM and BRC Official X (formerly Twitter) accounts are now open.
We will send out information and announcements about BioResource.
Please follow us.
https://x.com/RBRC_JCM_en
https://x.com/RIKEN_BRC_en
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Newly cataloged strains (2023.05.01 - 2023.11.30)
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Bacteria
"Acetatifactor aquisgranensis" JCM 36051 Proposed type strain
Acinetobacter tibetensis JCM 35630 Type strain
Actibacterium sp. JCM 34663
Actinophytocola gossypii JCM 34412 Type strain
Adlercreutzia agrestimuris JCM 36042 Type strain
Aerococcus agrisoli JCM 33111 Type strain
Aeromicrobium senzhongii JCM 33888 Type strain
Agrilactobacillus fermenti JCM 33476 Type strain
Alishewanella maricola JCM 34596 Type strain
Alkalibacter rhizosphaerae JCM 34530 Type strain
Alkalicoccobacillus porphyridii JCM 32931 Type strain
Alkalimarinus alittae JCM 35924 Type strain
"Anaerocaecibacter muris" JCM 35013 Proposed type strain
Anaerosoma tenue JCM 39237 Type strain
"Anaerotardibacter muris" JCM 35014 Proposed type strain
Aristaeella hokkaidonensis JCM 34733 Type strain
Aristaeella lactis JCM 34734 Type strain
Arthrobacter caoxuetaonis JCM 35173 Type strain
Arthrobacter gengyunqii JCM 35168 Type strain
Arthrobacter zhangbolii JCM 35170 Type strain
"Aureibaculum luteum" JCM 30335 Proposed type strain
Bacillus changyiensis JCM 35755 Type strain
Bacillus litorisediminis JCM 34875 Type strain
Bacillus litorisediminis JCM 34876
Bacillus pinisoli JCM 35212 Type strain
"Bacteroides muris" JCM 36049 Proposed type strain
Belliella alkalica JCM 34281 Type strain
Belliella calami JCM 34280 Type strain
Belliella filtrata JCM 34282 Type strain
"Bombiscardovia apis" JCM 35345 Proposed type strain
"Bombiscardovia nodaiensis" JCM 35346 Proposed type strain
"Brevibacterium zhoupengii" JCM 34230 Proposed type strain
Caniella muris JCM 36050 Type strain
"Cellulomonas triticagri" JCM 32550 Proposed type strain
Chakrabartyella piscis JCM 35769 Type strain
Chitinophaga nivalis JCM 35787
Chitinophaga nivalis JCM 35788 Type strain
Chryseobacterium faecale JCM 34836 Type strain
Chryseobacterium foetidum JCM 35633 Type strain
Chryseobacterium luquanense JCM 35707 Type strain
"Chryseobacterium muglaense" JCM 34191 Proposed type strain
Chryseobacterium oryctis JCM 35215 Type strain
Chryseobacterium paludis JCM 35632 Type strain
Chryseobacterium turcicum JCM 34190 Type strain
Claveliimonas bilis JCM 35899 Type strain
Claveliimonas bilis JCM 35900
Claveliimonas bilis JCM 35901
"Clostridium aromativorans" JCM 35127 Proposed type strain
"Clostridium mucosae" JCM 35244 Proposed type strain
Clostridium weizhouense JCM 34754 Type strain
Constantimarinum furrinae JCM 33022 Type strain
Curtanaerobium respiraculi JCM 35329
Curtanaerobium respiraculi JCM 35330 Type strain
Curtobacterium caseinilyticum JCM 34828 Type strain
Curtobacterium citri JCM 34829 Type strain
Curtobacterium subtropicum JCM 34830 Type strain
Cutibacterium equinum JCM 35966 Type strain
Cyclonatronum proteinivorum JCM 31662 Type strain
Deefgea piscis JCM 34941 Type strain
Deefgea tanakiae JCM 34942 Type strain
Deferrivibrio essentukiensis JCM 39245 Type strain
Defluviimonas sp. JCM 34653
Defluviimonas sp. JCM 34656
Defluviimonas sp. JCM 34660
Defluviimonas sp. JCM 35566
"Deinococcus taeanensis" JCM 34027 Proposed type strain
"Desulfatitalea alkaliphila" JCM 39202 Proposed type strain
"Desulfofustis limnaeus" JCM 39161 Proposed type strain
"Desulfoluna limicola" JCM 39257 Proposed type strain
Desulfotomaculum varum JCM 39194 Type strain
Dubosiella muris JCM 36048 Type strain
Dyadobacter pollutisoli JCM 34491 Type strain
Faecalibacterium duncaniae JCM 39393
Faecalibacterium duncaniae JCM 39394
Falsirhodobacter algicola JCM 34380 Type strain
Fervidibacillus albus JCM 33662 Type strain
Fervidibacillus halotolerans JCM 34001 Type strain
"Flaviflexus equikiangi" JCM 33598 Proposed type strain
Fundicoccus fermenti JCM 34140 Type strain
Fundidesulfovibrio agrisoli JCM 35588 Type strain
Fundidesulfovibrio terrae JCM 35589 Type strain
Georgenia halotolerans JCM 33946 Type strain
"Geothrix alkalitolerans" JCM 39325 Proposed type strain
Geothrix fuzhouensis JCM 39330 Type strain
Geothrix paludis JCM 39327 Type strain
"Geothrix terrae" JCM 39321 Proposed type strain
Grimontia kaedaensis JCM 34978 Type strain
Haliovirga abyssi JCM 39166 Type strain
"Hallella absiana" JCM 35423 Proposed type strain
"Hallella absiana" JCM 35609
Hoeflea algicola JCM 35548 Type strain
Hoeflea poritis JCM 35852 Type strain
Hoeflea ulvae JCM 35549 Type strain
Holtiella tumoricola JCM 30568 Type strain
Hominicoprocola fusiformis JCM 35908 Type strain
Hominiventricola filiformis JCM 35913 Type strain
Hydrogenimonas cancrithermarum JCM 39185 Type strain
"Hydrogenophaga crocea" JCM 34507 Proposed type strain
Hymenobacter aerilatus JCM 35219 Type strain
Hymenobacter cellulosilyticus JCM 35216 Type strain
Hymenobacter cellulosivorans JCM 35217 Type strain
Hymenobacter sublimis JCM 35222 Type strain
Hymenobacter volaticus JCM 35223 Type strain
"Iodidimonas nitroreducens" JCM 17846 Proposed type strain
"Jiella avicenniae" JCM 34330 Proposed type strain
Jiella pelagia JCM 35838 Type strain
Lactiplantibacillus plantarum JCM 36455
Lactobacillus agrestimuris JCM 36045 Type strain
"Lactobacillus xylocopicola" JCM 35343 Proposed type strain
Lactococcus ileimucosae JCM 36040 Type strain
Lactococcus muris JCM 36041 Type strain
"Lelliottia steviae" JCM 34938 Proposed type strain
Lentibacillus daqui JCM 35213 Type strain
Lentibacter sp. JCM 35576
Lepagella muris JCM 36046 Type strain
Leucobacter allii JCM 35240
Leucobacter allii JCM 35241 Type strain
Leucobacter rhizosphaerae JCM 35239 Type strain
Levilactobacillus yiduensis JCM 35804 Type strain
Ligilactobacillus agilis JCM 36450
Ligilactobacillus animalis JCM 36442
Ligilactobacillus animalis JCM 36443
Ligilactobacillus animalis JCM 36452
Ligilactobacillus animalis JCM 36453
Ligilactobacillus animalis JCM 36454
Ligilactobacillus cholophilus JCM 36074 Type strain
Ligilactobacillus equi JCM 36436
Ligilactobacillus equi JCM 36444
Ligilactobacillus hayakitensis JCM 36437
Ligilactobacillus murinus JCM 36440
Ligilactobacillus saerimneri JCM 36433
Ligilactobacillus saerimneri JCM 36435
Ligilactobacillus saerimneri JCM 36439
Ligilactobacillus saerimneri JCM 36446
Ligilactobacillus saerimneri JCM 36447
Ligilactobacillus saerimneri JCM 36449
Ligilactobacillus saerimneri JCM 36451
Ligilactobacillus salivarius JCM 36430
Ligilactobacillus salivarius JCM 36431
Ligilactobacillus salivarius JCM 36432
Ligilactobacillus salivarius JCM 36434
Ligilactobacillus salivarius JCM 36438
Ligilactobacillus salivarius JCM 36441
Ligilactobacillus salivarius JCM 36445
Ligilactobacillus salivarius JCM 36448
Limnobaculum eriocheiris JCM 34675 Type strain
Limosilactobacillus agrestimuris JCM 36039 Type strain
Limosilactobacillus caecicola JCM 36052 Type strain
Mariluticola halotolerans JCM 34934 Type strain
Marinomonas maritima JCM 35550 Type strain
Marixanthotalea marina JCM 34682 Type strain
Marnyiella aurantia JCM 33925 Type strain
"Metabacillus rhizolycopersici" JCM 35080 Proposed type strain
Methylacidiphilum caldifontis JCM 39288 Type strain
Methylacidiphilum kamchatkense JCM 30608 Type strain
"Methylacidiphilum sp." JCM 39287
Methylococcus mesophilus JCM 35359 Type strain
Microbacterium festucae JCM 35339 Type strain
Microbacterium nymphoidis JCM 35340 Type strain
"Microbacterium sulfonylureivorans" JCM 32823 Proposed type strain
Microbulbifer sp. JCM 33586
"Microcella aerolata" JCM 34462 Proposed type strain
Microvirga terrae JCM 34259 Type strain
Miniphocaeibacter halophilus JCM 39107 Type strain
Moorella caeni JCM 35360 Type strain
Mumia quercus JCM 35005 Type strain
Muricaecibacterium torontonense JCM 36047 Type strain
Mycobacterium kiyosense JCM 34837 Type strain
Myroides oncorhynchi JCM 34205 Type strain
Natronogracilivirga saccharolytica JCM 32930 Type strain
Neisseria lisongii JCM 35323 Type strain
Neobacillus citreus JCM 34835 Type strain
"Neobacillus muris" JCM 36053 Proposed type strain
Neobacillus rhizophilus JCM 34834 Type strain
Neopussillimonas aromaticivorans JCM 34761 Type strain
Neorhizobium turbinariae JCM 35342 Type strain
"Neptuniibacter victor" JCM 35563 Proposed type strain
"Niallia alba" JCM 34492 Proposed type strain
Nitratireductor thuwalensis JCM 33620 Type strain
Nitrosophilus kaiyonis JCM 39187 Type strain
"Nocardia guangzhouensis" JCM 34519 Proposed type strain
"Nocardia ningxiensis" JCM 34961 Proposed type strain
Nocardia pulmonis JCM 34955 Type strain
"Nocardia yinchuanensis" JCM 34962 Proposed type strain
Nocardioides abyssi JCM 35775 Type strain
Nocardioides cremeus JCM 35774 Type strain
Nocardioides faecalis JCM 33891 Type strain
Nocardioides marmotae JCM 33892 Type strain
Nocardioides oceani JCM 35776 Type strain
Novosphingobium organovorum JCM 35067 Type strain
Novosphingobium sp. JCM 35764
Occultella gossypii JCM 34413 Type strain
Oryzibacter oryziterrae JCM 34744 Type strain
"Otoolea muris" JCM 36054 Proposed type strain
"Paenibacillus albicereus" JCM 34513 Proposed type strain
"Paenibacillus arenilitoris" JCM 34215 Proposed type strain
"Paenibacillus sinensis" JCM 34616
"Paenibacillus sinensis" JCM 34620 Proposed type strain
Paenibacillus soyae JCM 34672 Type strain
Paracoccus albicereus JCM 35527 Type strain
Paracoccus marinaquae JCM 34661 Type strain
Paracoccus shanxieyensis JCM 33719 Type strain
Parasedimentitalea psychrophila JCM 34219 Type strain
Parvivirga hydrogeniphila JCM 39246 Type strain
Peptoniphilus equinus JCM 35845 Type strain
Planococcus halotolerans JCM 32720
Polycladospora coralii JCM 34206 Type strain
Polycladospora coralii JCM 34207
Pontibacter kalidii JCM 33290 Type strain
Profundirhabdus halotolerans JCM 33008 Type strain
Proteiniclasticum aestuarii JCM 34531 Type strain
Pseudalkalibacillus sedimenti JCM 35610 Type strain
Pseudalkalibacillus spartinae JCM 35611 Type strain
Pseudodesulfovibrio nedwellii JCM 35746 Type strain
Pseudomonas benzopyrenica JCM 35914 Type strain
Pseudomonas citri JCM 35385 Type strain
Pseudomonas oligotrophica JCM 35033 Type strain
"Pseudonocardia humida" JCM 34291 Proposed type strain
Psychroserpens ponticola JCM 35022 Type strain
"Pumilibacter intestinalis" JCM 35012 Proposed type strain
"Pumilibacter muris" JCM 35011 Proposed type strain
Ralstonia chuxiongensis JCM 35818 Type strain
Ralstonia mojiangensis JCM 35816 Type strain
Ralstonia nicotianae JCM 35814 Type strain
Ralstonia soli JCM 35817 Type strain
"Rhizobium alarense" JCM 34826 Proposed type strain
"Rhizobium halophilum" JCM 34967 Proposed type strain
Robbsia andropogonis JCM 13883
Roseitranquillus sediminis JCM 33538 Type strain
Roseobacter sp. JCM 35567
"Roseomonas haemaphysalidis" JCM 34187 Proposed type strain
"Roseomonas marmotae" JCM 34188 Proposed type strain
Roseovarius pelagicus JCM 35639 Type strain
"Rothia santali" JCM 35593 Proposed type strain
Ruegeria sp. JCM 35565
Ruegeria sp. JCM 35569
Ruminococcus torques JCM 36208
Ruminococcus torques JCM 36209
Sagittula sp. JCM 36213
"Sedimentimonas lavescens" JCM 35568
"Sedimentimonas sp." JCM 34676
"Segatella brunsvicensis" JCM 35353 Proposed type strain
Segatella copri JCM 35978
"Segatella sanihominis" JCM 35979 Proposed type strain
"Selenobaculum gbiensis" JCM 36070 Proposed type strain
Serratia marcescens JCM 1671
Shewanella electrica JCM 34902 Type strain
Shewanella electrica JCM 34903
Shewanella ferrihydritica JCM 34899 Type strain
"Shewanella shenzhenensis" JCM 34900 Proposed type strain
Shouchella tritolerans JCM 35613 Type strain
"Siccirubricoccus soli" JCM 35132 Proposed type strain
Solibacillus daqui JCM 35214 Type strain
"Sphaerisporangium fuscus" JCM 34848 Proposed type strain
Sphaerisporangium perillae JCM 35655 Type strain
Sphingomonas baiyangensis JCM 33962 Type strain
"Sphingomonas glaciei" JCM 34749 Proposed type strain
Sphingomonas lycopersici JCM 35647 Type strain
Sphingomonas lycopersici JCM 35648
"Sphingomonas qomolangmaensis" JCM 35564 Proposed type strain
Spirosoma oryzicola JCM 35224 Type strain
Sporolactobacillus mangiferae JCM 35082 Type strain
"Stenotrophomonas muris" JCM 35242 Proposed type strain
Streptomyces beihaiensis JCM 35629 Type strain
Streptomyces cellulosae JCM 34241
"Streptomyces cynarae" JCM 35919 Proposed type strain
Streptomyces fuscus JCM 35917 Type strain
Streptomyces gossypii JCM 34628 Type strain
Streptomyces radicis JCM 32151
Streptomyces radicis JCM 32152 Type strain
"Streptomyces sichuanensis" JCM 34964 Proposed type strain
"Stygiobacter electus" JCM 39242 Proposed type strain
Sulfoacidibacillus ferrooxidans JCM 33225 Type strain
Tahibacter amnicola JCM 35749 Type strain
Tahibacter soli JCM 35402 Type strain
"Terrisporobacter muris" JCM 35245 Proposed type strain
"Thalassotalea hakodatensis" JCM 34608 Proposed type strain
Thalassovita sp. JCM 17794
Thermobacterium salinum JCM 35842 Type strain
Unidentified bacterium JCM 34662
Veillonella agrestimuris JCM 36043 Type strain
Veillonella intestinalis JCM 36044 Type strain
Weissella fangxianensis JCM 35803 Type strain
"Xylocopilactobacillus apicola" JCM 35348 Proposed type strain
"Xylocopilactobacillus apis" JCM 35347 Proposed type strain
Archaea
Halalkaliarchaeum sp. JCM 34103
Halanaeroarchaeum sp. JCM 34029
Halobacterium wangiae JCM 33551 Type strain
Halobacterium zhouii JCM 33556 Type strain
Halocatena marina JCM 35422 Type strain
Haloglomus halophilum JCM 34161 Type strain
Haloglomus salinum JCM 34163 Type strain
Halohasta salina JCM 30841 Type strain
Halomicroarcula laminariae JCM 32949
Halomicroarcula laminariae JCM 32950 Type strain
Halomicroarcula marina JCM 34915
Halomicroarcula marina JCM 35414 Type strain
Haloprofundus sp. JCM 33899
Halorarius halobius JCM 34319 Type strain
Halorarius litoreus JCM 34966 Type strain
"Halorubrum ruber" JCM 34701 Proposed type strain
"Halorussus aquaticus" JCM 31852 Proposed type strain
"Halorussus gelatinilyticus" JCM 31855 Proposed type strain
"Halorussus limi" JCM 31856 Proposed type strain
"Halorussus salilacus" JCM 34156 Proposed type strain
"Halorussus salinisoli" JCM 34157 Proposed type strain
"Halorussus vallis" JCM 31851 Proposed type strain
"Halorutilus salinus" JCM 33312 Proposed type strain
"Halovivax gelatinilyticus" JCM 34317 Proposed type strain
Metallosphaera tengchongensis JCM 35675 Type strain
Methanolobus mangrovi JCM 39396 Type strain
Methanolobus sediminis JCM 39397 Type strain
"Methanomethylophilus alvi" JCM 31474 Proposed type strain
Natrinema caseinilyticum JCM 34918 Type strain
Natrinema gelatinilyticum JCM 34909 Type strain
Natrinema marinum JCM 35420 Type strain
Natrinema zhouii JCM 31113 Type strain
"Natronobeatus ordinarius" JCM 33559 Proposed type strain
"Natronococcus pandeyae" JCM 33003 Proposed type strain
Natronomonas aquatica JCM 33798 Type strain
Natronomonas marina JCM 34162 Type strain
"Natrononativus amylolyticus" JCM 34324 Proposed type strain
Natronosalvus amylolyticus JCM 33563 Type strain
Natronosalvus caseinilyticus JCM 35074 Type strain
Natronosalvus halobius JCM 33549 Type strain
Natronosalvus rutilus JCM 33562 Type strain
Natronosalvus vescus JCM 34318 Type strain
Salinigranum marinum JCM 30241 Type strain
"Salinilacihabitans rarus" JCM 33733 Proposed type strain
"Scheffleriplasma hospitalis" JCM 39074
Thermococcus argininiproducens JCM 39181 Type strain
Thermoplasma sp. JCM 33127
Fungi
Filobasidium chaidanense JCM 35456
Filobasidium chaidanense JCM 35457
Filobasidium chaidanense JCM 35458
Filobasidium chaidanense JCM 35459
Filobasidium chaidanense JCM 35460
Filobasidium chaidanense JCM 35461
Harmoniella junipericola JCM 32539 ex-paratype strain
Harmoniella junipericola JCM 39213 ex-holotype strain
Harmoniella junipericola JCM 39214
Harmoniella junipericola JCM 39215
Harmoniella junipericola JCM 39216
Harmoniella junipericola JCM 39222 ex-paratype strain
Harmoniella junipericola JCM 39223 ex-paratype strain
Kondoa globosa JCM 35467
Saksenaea sp. JCM 39173
Symmetrospora salmonea JCM 35465
Symmetrospora salmonea JCM 35466
Teunia nitrariae JCM 35462
Teunia nitrariae JCM 35463
Teunia nitrariae JCM 35464
Vishniacozyma pseudodimennae JCM 35455
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Microbe Division / Japan Collection of Microorganisms
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2023.12.07
