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RIKEN BioResource Research Center - Japan Collection of Microorganisms
JCM Mail News (2023.03.15)
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RIKEN BioResource Research Center - Japan Collection of Microorganisms
(JCM) is pleased to update you with the latest information.
======= Contents =====================================================
- Special topic: Obligate symbiotic, thermoacidophilic DPANN archaea
capable of growing under aerobic conditions
- Newly cataloged strains (2022.09.01 - 2023.02.28)
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Special topic: Obligate symbiotic, thermoacidophilic DPANN archaea
capable of growing under aerobic conditions
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The DPANN group is a superphylum-level archaeal clade, proposed in
2013. This group is suggested to be one of the deepest branches in the
domain Archaea. DPANN archaea have been found in a variety of
environments, including hot springs and soils, and are especially
dominant in oligotrophic groundwater environments in some cases, but
their ecological role is largely unknown. Although the genomes of
nearly 1,000 species of DPANN archaea have been reported so far, only
about 10 species have been successfully cultured in the laboratory,
and all of them require host organisms for their growth, i.e.,
obligate symbiotic. The mechanism of their symbiosis has not been
elucidated. Thus, DPANN archaea are of great interest to the
physiology, ecology, and evolution of life. Currently, two strains of
thermoacidophilic DPANN archaea capable of growing under aerobic
conditions are available from JCM.
Nanobdella aerobiophila JCM 33616T
"Microcaldus variisymbioticus" JCM 33787T
N. aerobiophila JCM 33616T and "M. variisymbioticus" JCM 33787T belong
to the candidatus phyla "Nanoarchaeota" and "Microcaldota",
respectively. Both stains are obligate symbiotic and are provided as
co-cultures with their host archaea.
References:
Kato et al.
Nanobdella aerobiophila gen. nov., sp. nov., a thermoacidophilic,
obligate ectosymbiotic archaeon, and proposal of Nanobdellaceae fam.
nov., Nanobdellales ord. nov. and Nanobdellia class. nov.
Int. J. Syst. Evol. Microbiol. 72: 005489, 2022.
DOI: 10.1099/ijsem.0.005489
Sakai et al.
Insight into the symbiotic lifestyle of DPANN archaea revealed by
cultivation and genome analyses.
Proc. Natl. Acad. Sci. USA 119: e2115449119, 2022.
DOI: 10.1073/pnas.2115449119
Shingo Kato Ph. D.
Curator (Archaea and extremophiles)
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Newly cataloged strains (2022.09.01 - 2023.02.28)
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Bacteria
"Acidilutibacter cellobiosedens" JCM 39087 Proposed type strain
Acidithiobacillus ferrooxidans JCM 39192
Acinetobacter sp. JCM 18511
Acrocarpospora catenulata JCM 34849 Type strain
Aestuariicella albida JCM 34652 Type strain
Aestuariispira ectoiniformans JCM 34041 Type strain
Alcanivorax sp. JCM 18791
Aliamphritea hakodatensis JCM 34607 Type strain
Aquiluna sp. JCM 32205
Aquirufa aurantiipilula JCM 34078 Type strain
Aquirufa lenticrescens JCM 34077 Type strain
Arthrobacter antioxidans JCM 35246 Type strain
Berryella wangjianweii JCM 34748 Type strain
Blautia pseudococcoides JCM 35243 Type strain
"Brachybacterium halotolerans subsp. JCM 34760 Proposed type strain
kimchii"
Brachybacterium kimchii JCM 34759 Type strain
"Brevundimonas fontaquae" JCM 34943 Proposed type strain
Brucepastera parasyntrophica JCM 39134 Type strain
Caenimonas aquaedulcis JCM 34453 Type strain
Chloroflexus aggregans JCM 39377 Type strain
Chryseobacterium paridis JCM 34636 Type strain
Cognataquiflexum nitidum JCM 34222 Type strain
Cognataquiflexum rubidum JCM 34612 Type strain
Colwellia maritima JCM 35001 Type strain
Corynebacterium kalidii JCM 35048 Type strain
Croceicoccus hydrothermalis JCM 31508 Type strain
Deefgea salmonis JCM 35050 Type strain
"Desulfolithobacter dissulfuricans" JCM 34117 Proposed type strain
"Desulfopila corrodens" JCM 39320
Fictibacillus marinisediminis JCM 34437 Type strain
Flavihumibacter fluminis JCM 34870 Type strain
Flavobacterium channae JCM 34998 Type strain
Flavobacterium cyclinae JCM 34997 Type strain
Flavobacterium soyae JCM 34673 Type strain
"Fundidesulfovibrio soli" JCM 35676 Proposed type strain
"Geoalkalibacter halelectricus" JCM 35356 Proposed type strain
Gordonia liuliyuniae JCM 34879 Type strain
Gordonia zhenghanii JCM 34878 Type strain
Granulimonas faecalis JCM 35015 Type strain
Hallella faecis JCM 34979 Type strain
Halomonas getboli JCM 35085 Type strain
Halorhodospira abdelmalekii JCM 39379 Type strain
Halorhodospira halochloris JCM 39378 Type strain
Hephaestia mangrovi JCM 33125 Type strain
Hyphomonas sediminis JCM 34658 Type strain
Ideonella aquatica JCM 34285 Type strain
Janibacter endophyticus JCM 34639 Type strain
Jiella flava JCM 34331 Type strain
Lacticaseibacillus kribbianus JCM 34953 Type strain
Lactobacillus amylovorus JCM 35777
Lapidilactobacillus luobeiensis JCM 35553 Type strain
Legionella lytica JCM 33226
Leptogranulimonas caecicola JCM 35017 Type strain
Levilactobacillus humaensis JCM 35554 Type strain
"Levilactobacillus tujiorum" JCM 35210 Proposed type strain
Ligilactobacillus pabuli JCM 34518 Type strain
Limnohabitans australis JCM 32223
Listeria monocytogenes JCM 35698
Lysobacter avium JCM 33223 Type strain
Lysobacter ciconiae JCM 34832 Type strain
Lysobacter selenitireducens JCM 34786 Type strain
Mangrovimonas futianensis JCM 34871 Type strain
Mangrovimonas futianensis JCM 34872
Mangrovimonas futianensis JCM 34873
Marinilongibacter aquaticus JCM 34683 Type strain
Megasphaera elsdenii JCM 35779
Metabacillus flavus JCM 34406 Type strain
Micromonospora antibiotica JCM 34495 Type strain
Micromonospora humidisoli JCM 34496 Type strain
Microvirga puerhi JCM 35317 Type strain
Mucilaginibacter robiniae JCM 33062 Type strain
Neorhizobium xiangyangii JCM 35100 Type strain
Niabella agricola JCM 34758 Type strain
Nocardia sputi JCM 33932 Type strain
Nocardioides campestrisoli JCM 34307 Type strain
Nocardioides ochotonae JCM 34185 Type strain
"Nocardiopsis akebiae" JCM 34708 Proposed type strain
Nocardiopsis eucommiae JCM 34707 Type strain
Octadecabacter algicola JCM 34969 Type strain
Octadecabacter dasysiphoniae JCM 34973 Type strain
Paenibacillus agilis JCM 32775 Type strain
Paenibacillus rhizolycopersici JCM 34488 Type strain
Paenibacillus sabuli JCM 34216 Type strain
Palleniella intestinalis JCM 34697 Type strain
Parachryseolinea silvisoli JCM 35041 Type strain
Paracoccus everestensis JCM 35227 Type strain
Photobacterium sp. JCM 31899
Polaribacter marinus JCM 35021 Type strain
Polymorphobacter megasporae JCM 34545 Type strain
Proteiniphilum propionicum JCM 34753 Type strain
Pseudomonas lijiangensis JCM 35177 Type strain
Pseudomonas paralcaligenes JCM 34250 Type strain
Ralstonia wenshanensis JCM 35178 Type strain
Rhizobium populisoli JCM 34442 Type strain
Rhodoluna lacicola JCM 32204
Rodentibacter haemolyticus JCM 35780 Type strain
Roseicella aerolata JCM 34449 Type strain
Roseococcus pinisoli JCM 34402 Type strain
Roseovarius carneus JCM 34778 Type strain
Saccharothrix luteola JCM 34800 Type strain
Salmonella enterica subsp. enterica JCM 35086
Salmonella enterica subsp. enterica JCM 35087
Salmonella enterica subsp. enterica JCM 35088
Salmonella enterica subsp. enterica JCM 35089
Salmonella enterica subsp. enterica JCM 35090
Salmonella enterica subsp. enterica JCM 35091
Salmonella enterica subsp. enterica JCM 35092
Salmonella enterica subsp. enterica JCM 35093
Secundilactobacillus angelensis JCM 35209 Type strain
Segatella copri JCM 35349
Segatella copri JCM 35350
Segatella copri JCM 35351
Segatella copri JCM 35352
"Sellimonas caecigallum" JCM 35759 Proposed type strain
Shewanella violacea JCM 31900
Sphingomonas citri JCM 34796 Type strain
Sphingomonas citricola JCM 34795 Type strain
Sphingomonas folii JCM 34794 Type strain
Sphingomonas quercus JCM 34441 Type strain
Sphingopyxis jiangsuensis JCM 34678 Type strain
"Sporosarcina beigongshangi" JCM 34409 Proposed type strain
Streptococcus alactolyticus JCM 35778
"Streptomyces akebiae" JCM 34922 Proposed type strain
Streptomyces plumbidurans JCM 35204 Type strain
"Sulfurimonas aquatica" JCM 35004 Proposed type strain
"Taurinivorans muris" JCM 34262
Tenacibaculum aquimarinum JCM 35023 Type strain
Thermospira aquatica JCM 31314 Type strain
Unidentified bacterium JCM 32221
Unidentified bacterium JCM 32222
Unidentified bacterium JCM 32224
Vibrio salinus JCM 33626 Type strain
Xiamenia xianingshaonis JCM 34097 Type strain
Xylanibacter muris JCM 34698 Type strain
Xylanibacter rodentium JCM 34762 Type strain
Zobellella iuensis JCM 34456 Type strain
Archaea
Haladaptatus halobius JCM 34141 Type strain
Haladaptatus salinisoli JCM 34142 Type strain
Halocatena salina JCM 32960 Type strain
Halogranum salarium JCM 35635 Type strain
Halorubrum salinarum JCM 35636 Type strain
Halosolutus amylolyticus JCM 33558 Type strain
Halosolutus gelatinilyticus JCM 33554 Type strain
Halosolutus halophilus JCM 30838 Type strain
Metallosphaera javensis JCM 34702 Type strain
Methanobacterium alkalithermotolerans JCM 31304 Type strain
Methanocaldococcus lauensis JCM 39048
Methanocaldococcus lauensis JCM 39049 Type strain
Sala cibi JCM 34265 Type strain
Sala cibi JCM 34266
Fungi
Bensingtonia pseudonaganoensis JCM 3927
Bulleribasidium variabile JCM 7267
Debaryomyces hansenii JCM 5204
Debaryomyces hansenii JCM 5206
Globisporangium sp. JCM 30524
Hamamotoa singularis JCM 5192
Hanseniaspora osmophila JCM 34045
Hanseniaspora osmophila JCM 34052
Hanseniaspora vineae JCM 34057
Hanseniaspora vineae JCM 34058
Kazachstania servazzii JCM 5207
Lipomyces oligophagus JCM 5199
Meyerozyma guilliermondii JCM 5210
Papiliotrema laurentii JCM 12199
Phaeotremella translucens JCM 32022
Phaeotremella translucens JCM 32023
Pseudotremella lacticolor JCM 5946
Rhodotorula alborubescens JCM 5191
Sirobasidium apiculatum JCM 32018
Sirobasidium apiculatum JCM 32019
Sirobasidium japonicum JCM 32020
Sirobasidium japonicum JCM 32021
Sporobolomyces johnsonii JCM 6143
Sporobolomyces johnsonii JCM 6144
Sporobolomyces johnsonii JCM 6145
Sporobolomyces johnsonii JCM 6146
Sporobolomyces johnsonii JCM 6148
Sporobolomyces johnsonii JCM 6149
Sporobolomyces johnsonii JCM 6150
Starmerella stellata JCM 34049
Torulaspora delbrueckii JCM 34048
Torulaspora delbrueckii JCM 34061
Trimorphomyces sakaeraticus JCM 11901
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2023.03.15
