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RIKEN BioResource Research Center - Japan Collection of Microorganisms
JCM Mail News (2022.05.10)
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RIKEN BioResource Research Center - Japan Collection of Microorganisms
(JCM) is pleased to update you with the latest information.
======= Contents =====================================================
- Special topic: The scientific name of Faecalibacterium prausnitzii
JCM 31915 has been changed.
- Lists of JCM strains released
- Newly cataloged strains (2022.01.01 - 2022.04.30)
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Special topic: The scientific name of Faecalibacterium prausnitzii
JCM 31915 has been changed.
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The genus Faecalibacterium was established by Dr. Sylvia H. Duncan and
her colleagues in the United Kingdom in 2002 for the reclassification
of formerly misidentified strains of Fusobacterium prausnitzii ATCC
27768T and its reference strain ATCC 27766, along with two other
isolates (A2-165 and L2-6). Consequently, these strains have been
reclassified as Faecalibacterium prausnitzii (hereinafter F.
prausnitzii). Currently the genus Faecalibacterium is recognized as
one of the most important gut butyrate-producing bacteria for human
health.
Since 2017, JCM has been distributing strain A2-165 JCM 31915 = DSM
17677). Since its launch, this strain has been used by many
researchers and boasts the third highest track record of distribution.
F. prausnitzii strain A2-165 is not a type strain, but it is a very
famous strain that is used by a large number of researchers at the
world level. Intraspecific diversity of F. prausnitzii has been
discussed for some time. A paper on the reclassification of
Faecalibacterium strains was published in the April issue 2022 of the
International Journal of Systematic and Evolutionary Microbiology
(IJSEM). Therefore, the scientific name of F. prausnitzii JCM 31915
(strain A2-165), which has been distributed by JCM, has been changed
to Faecalibacterium duncaniae JCM 31915T. The scientific name of this
strain is named after Dr. Sylvia H. Duncan, who founded the genus
Faecalibacterium.
References
Sakamoto et al. 2022. Genome-based, phenotypic and chemotaxonomic
classification of Faecalibacterium strains: proposal of three novel
species Faeca1libacterium duncaniae sp. nov., Faecalibacterium
hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
Int. J. Syst. Evol. Microbiol., 72: 005379.
DOI: 10.1099/ijsem.0.005379
Mitsuo Sakamoto, Ph.D.
Curator of Anaerobic Bacteria & Lactic Acid Bacteria
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Lists of JCM strains released
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Lists of JCM strains have been released. The lists are available for
all prokaryotes (i.e., Bacteria and Archaea) and for some individual
groups, such as Archaea, Lactic acid bacteria, and Yeasts. Using the
lists, JCM strains could be concentrated based on taxonomic names of
higher ranks, medium numbers, growth temperatures, etc. The lists
will be helpful in selecting and ordering JCM strains.
Lists of JCM strains
https://www.jcm.riken.jp/JCM/list/
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Newly cataloged strains (2022.01.01 - 2022.04.30)
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Bacteria
Actinomadura violacea JCM 33065 Type strain
Adhaeribacter terrigena JCM 34303 Type strain
Aequorivita iocasae JCM 34635 Type strain
"Alcanivorax limicola" JCM 33717 Proposed type strain
Aliidiomarina halalkaliphila JCM 34227 Type strain
Altererythrobacter lutimaris JCM 33750 Type strain
Bacillus sp. JCM 33446
Bacillus sp. JCM 33447
Bacillus sp. JCM 33448
Bacillus sp. JCM 33449
"Bacteroides cellulolyticus" JCM 35042 Proposed type strain
Brevibacterium atlanticum JCM 33846 Type strain
Brevibacterium limosum JCM 33844 Type strain
"Brevibacterium pigmentatum" JCM 33843 Proposed type strain
Breznakiella homolactica JCM 39135 Type strain
Caproicibacterium amylolyticum JCM 33783 Type strain
Caproicibacterium lactatifermentans JCM 33782 Type strain
"Citrobacter tructae" JCM 33612 Proposed type strain
Cochlodiniinecator piscidefendens JCM 34119 Type strain
Comamonas fluminis JCM 34454 Type strain
Desulfomarina profundi JCM 34118 Type strain
Devosia aurantiaca JCM 33930 Type strain
Devosia salina JCM 34403 Type strain
Diplocloster agilis JCM 34350
Diplocloster agilis JCM 34353 Type strain
Diplocloster modestus JCM 34351 Type strain
"Elioraea tepida" JCM 33060 Proposed type strain
Erwinia phyllosphaerae JCM 34792 Type strain
Escherichia coli JCM 16946
Flavobacterium ammonificans JCM 34684 Type strain
Flavobacterium ammonificans JCM 34685
Flavobacterium ammoniigenes JCM 32249 Type strain
Flavobacterium erciyesense JCM 34201 Type strain
Fulvivirga lutea JCM 34505 Type strain
Gemmobacter fulvus JCM 34790
Gemmobacter fulvus JCM 34791 Type strain
Geobacter benzoatilyticus JCM 39190 Type strain
Geomonas azotofigens JCM 33032 Type strain
Gordonia amarae JCM 34457
Gordonia amarae JCM 34459
Gordonia amarae JCM 34460
"Gordonia pseudoamarae" JCM 34458
"Gordonia pseudoamarae" JCM 35249
Halomonas azerica JCM 34260 Type strain
Hoyosella lacisalsi JCM 33650 Type strain
Hymenobacter psoromatis JCM 34571
Hymenobacter psoromatis JCM 34572 Type strain
Hymenobacter siberiensis JCM 34573
Hymenobacter siberiensis JCM 34574 Type strain
Hymenobacter siberiensis JCM 34575
Hymenobacter taeanensis JCM 34023 Type strain
Jiella mangrovi JCM 34332 Type strain
Jiella sonneratiae JCM 34333 Type strain
Lactobacillus huangpiensis JCM 34361 Type strain
Lactobacillus laiwuensis JCM 34502 Type strain
Leucobacter coleopterorum JCM 33667 Type strain
Leucobacter insecticola JCM 33668 Type strain
Leucobacter viscericola JCM 33669 Type strain
Marinomonas vulgaris JCM 34473 Type strain
Massilia soli JCM 34601 Type strain
Metabacillus bambusae JCM 34515 Type strain
Microbacterium atlanticum JCM 33959 Type strain
Microbacterium cremeum JCM 33958 Type strain
Microbacterium luteum JCM 33955 Type strain
Micromonospora humida JCM 34494 Type strain
Muricauda chongwuensis JCM 33643 Type strain
Nesterenkonia sedimenti JCM 19767 Type strain
Nitratireductor rhodophyticola JCM 31802 Type strain
Nocardioides mangrovi JCM 34553 Type strain
Nocardioides piscis JCM 33670 Type strain
Nonlabens sp. JCM 18403
Nonomuraea aridisoli JCM 32584 Type strain
Ornithinimicrobium avium JCM 32873 Type strain
Ornithinimicrobium ciconiae JCM 33221 Type strain
Paenibacillus artemisiicola JCM 34503 Type strain
Paenibacillus caui JCM 34618 Type strain
Paenibacillus lignilyticus JCM 34504 Type strain
Paenibacillus tianjinensis JCM 34610 Type strain
"Pedobacter aquae" JCM 33709 Proposed type strain
"Pedobacter segetis" JCM 34283 Proposed type strain
"Pelorhabdus rhamnosifermentans" JCM 39158 Proposed type strain
Phycicoccus avicenniae JCM 34335 Type strain
Polaribacter sp. JCM 18404
Prevotella lacticifex JCM 34664 Type strain
"Pseudocnuella soli" JCM 33202 Proposed type strain
Pseudomonas sp. JCM 33450
Pseudomonas sp. JCM 33451
Ramlibacter montanisoli JCM 33920 Type strain
Ramlibacter terrae JCM 33922 Type strain
Rhodococcus erythropolis JCM 34136
Rhodococcus hoagii JCM 34137
Saccharopolyspora aridisoli JCM 32922 Type strain
Saccharopolyspora elongata JCM 32921 Type strain
Saccharopolyspora karakumensis JCM 33530 Type strain
Saccharopolyspora terrae JCM 33531 Type strain
Sphingomonas piscis JCM 33738 Type strain
Sphingomonas radiodurans JCM 34750 Type strain
Sphingomonas sinipercae JCM 33739 Type strain
Sporosarcina jiandibaonis JCM 32514 Type strain
Stakelama flava JCM 34534 Type strain
Staphylococcus taiwanensis JCM 34726 Type strain
Streptococcus ilei JCM 18185 Type strain
"Streptococcus shenyangsis" JCM 33583 Proposed type strain
"Streptococcus symci" JCM 33582 Proposed type strain
Streptomyces apricus JCM 33736 Type strain
Streptomyces gobiensis JCM 34936 Type strain
"Streptomyces qaidamensis" JCM 31184 Proposed type strain
Tenacibaculum sp. JCM 18288
Thermoflavifilum sp. JCM 18429
Trichococcus shcherbakoviae subsp. JCM 33326 Type strain
psychrophilus
Vagococcus coleopterorum JCM 33682 Type strain
Vagococcus hydrophili JCM 33683 Type strain
"Vagococcus zengguangii" JCM 33478 Proposed type strain
Vineibacter terrae JCM 33507 Type strain
Winogradskyella sp. JCM 18289
Xanthobacter dioxanivorans JCM 34666 Type strain
Archaea
Halapricum desulfuricans JCM 34031
Halapricum desulfuricans JCM 34032 Type strain
Halobaculum rubrum JCM 32959 Type strain
"Haloprofundus halobius" JCM 35095 Proposed type strain
"Haloprofundus salilacus" JCM 33561 Proposed type strain
"Haloprofundus salinisoli" JCM 33553 Proposed type strain
Halorussus halobius JCM 31110 Type strain
Halorussus marinus JCM 32951
Halorussus marinus JCM 32952 Type strain
Halorussus pelagicus JCM 32953 Type strain
Methanocalculus pumilus JCM 39199
Methanoculleus submarinus JCM 39200
Methanosarcina semesiae JCM 39201
"Microcaldus variisymbioticus" JCM 33787 Proposed type strain
"Natronoarchaeum sulfidigenum" JCM 34033
"Natronorubrum halalkaliphilum" JCM 34235 Proposed type strain
Fungi
Acremonium sp. JCM 39225
Acremonium sp. JCM 39226
Acremonium sp. JCM 39227
Acrodontium luzulae JCM 39231
Acrodontium luzulae JCM 39234
Acrodontium sp. JCM 39224
Acrodontium sp. JCM 39228
Acrodontium sp. JCM 39229
Acrodontium sp. JCM 39232
Endocalyx melanoxanthus JCM 39196
Morchella sp. JCM 10586
Simplicillium sp. JCM 39230
Simplicillium sp. JCM 39233
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______________________________________________________________________
Microbe Division / Japan Collection of Microorganisms
RIKEN BioResource Research Center
3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
inquiry.jcm@riken.jp
https://jcm.brc.riken.jp/en/
______________________________________________________________________
2022.05.10
