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RIKEN BioResource Research Center - Japan Collection of Microorganisms
JCM Mail News (2019.11.08)
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RIKEN BioResource Research Center - Japan Collection of Microorganisms
(JCM) is pleased to update you with the latest information.
======= Contents =====================================================
- Special topic: Helicobacter pylori
- Newly cataloged strains (2019.02.01 - 2019.10.31)
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Special topic: Helicobacter pylori
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Helicobacter pylori is one of clinical bacteria frequently researched
in the clinical microbiology because of its relatedness to the
development of chronic gastritis, gastric ulcers, duodenal ulcers,
and stomach cancer. The high urease activity is a characteristic of
H. pylori. The urea present in the stomach is broken down to carbon
oxide and ammonia, and resulted ammonia neutralize area around
H. pylori.
In JCM, four strains of H. pylori are opened on on-line catalogue.
JCM 12093T, as the type strain of H. pylori, is from an endoscopic
biopsy specimen of human gastric mucosa in Australia. JCM 12095 and
JCM 12097 are from a patient with gastritis in France and UK,
respectively. JCM 12096 is from a gastric mucosa of healthy pigtailed
macaque, Macaca nemestrina. The genome sequence was determined for
JCM 12093T and JCM 12097.
Takao Iino, Ph.D.
Curator of Gram-negative aerobic and facultatively anaerobic bacteria
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Newly cataloged strains (2019.02.01 - 2019.10.31)
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Bacteria
Acinetobacter sp. JCM 16098
Acinetobacter sp. JCM 16099
Acinetobacter sp. JCM 16460
Acinetobacter sp. JCM 16461
Acinetobacter sp. JCM 16462
Acinetobacter sp. JCM 16489
Acinetobacter sp. JCM 16490
Acinetobacter sp. JCM 16491
Actinomadura deserti JCM 33401 Type strain
Actinophytocola glycyrrhizae JCM 33402 Type strain
Actinoplanes deserti JCM 30626 Type strain
Actinorectispora metalli JCM 33573 Type strain
Aestuariibaculum marinum JCM 31725 Type strain
Aggregatilinea lenta JCM 32065 Type strain
Alcanivorax profundi JCM 31866 Type strain
Alcanivorax sp. JCM 16045
Algoriphagus sanaruensis JCM 31446 Type strain
Algoriphagus sp. JCM 16080
Algoriphagus sp. JCM 16111
Alloscardovia theropitheci JCM 32430 Type strain
Alsobacter soli JCM 32501 Type strain
Altererythrobacter sp. JCM 16451
"Amnimonas aquatica" JCM 32266 Proposed type strain
Amycolatopsis panacis JCM 33574 Type strain
Aquirufa antheringensis JCM 32977 Type strain
Bacillus aciditolerans JCM 32973 Type strain
Bacillus piezotolerans JCM 32872 Type strain
Bacillus salacetis JCM 33205 Type strain
Bacillus sp. JCM 32767
Bacillus tequilensis JCM 31513
Bacillus tequilensis JCM 31514
Bacillus xiapuensis JCM 33155 Type strain
Bifidobacterium aemilianum JCM 33373 Type strain
Bifidobacterium callimiconis JCM 33352 Type strain
Bifidobacterium castoris JCM 33351 Type strain
Bifidobacterium dolichotidis JCM 33355 Type strain
"Bifidobacterium felsineum" JCM 31789 Proposed type strain
Bifidobacterium goeldii JCM 33353 Type strain
Bifidobacterium jacchi JCM 31788 Type strain
"Bifidobacterium primatium" JCM 30945 Proposed type strain
Bifidobacterium samirii JCM 33354 Type strain
"Bifidobacterium scaligerum" JCM 31792 Proposed type strain
"Bifidobacterium simiarum" JCM 31793 Proposed type strain
Bifidobacterium xylocopae JCM 33372 Type strain
Bizionia sp. JCM 16446
Bosea sp. JCM 28685
Bosea sp. JCM 28691
Bosea sp. JCM 28714
Bosea sp. JCM 28717
Bosea sp. JCM 28725
Brachybacterium endophyticum JCM 33403 Type strain
"Bradyrhizobium nitroreducens" JCM 18858 Proposed type strain
Brevibacillus brevis JCM 31516
Brevibacillus brevis JCM 31517
Brevibacillus brevis JCM 31518
Brevundimonas mongoliensis JCM 32172 Type strain
Brevundimonas sp. JCM 16450
"Burkholderia alba" JCM 32403 Proposed type strain
Butyricicoccus sp. JCM 32524
Butyricimonas faecalis JCM 33535 Type strain
Butyrivibrio sp. JCM 32525
Campylobacter jejuni subsp. jejuni JCM 32890 Type strain
Capnocytophaga canis JCM 31246
Castellaniella sp. JCM 16238
Castellaniella sp. JCM 16239
Catenibacillus scindens JCM 33534 Type strain
Cellulomonas rhizosphaerae JCM 32383 Type strain
Chromobacterium phragmitis JCM 31884 Type strain
Chryseobacterium aureum JCM 33165 Type strain
Chryseobacterium phosphatilyticum JCM 32876 Type strain
Chryseobacterium sp. JCM 16079
Chryseobacterium sp. JCM 28258
Chryseobacterium sp. JCM 28269
Chryseobacterium sp. JCM 28306
Chryseobacterium sp. JCM 28637
Clostridium fermenticellae JCM 32827 Type strain
Clostridium indicum JCM 32788 Type strain
"Corallibacterium pacifica" JCM 32252 Proposed type strain
Cupriavidus lacunae JCM 32674 Type strain
Deinococcus terrigena JCM 32248 Type strain
Desertactinospora gelatinilytica JCM 32585 Type strain
Desulfohalovibrio reitneri JCM 18662 Type strain
Devosia naphthalenivorans JCM 32509 Type strain
Devosia sp. JCM 28284
Devosia sp. JCM 28289
Devosia sp. JCM 28299
Devosia sp. JCM 28713
Devosia sp. JCM 28722
Domibacillus epiphyticus JCM 32632 Type strain
Domibacillus mangrovi JCM 32631 Type strain
"Dongshaea marina" JCM 32096 Proposed type strain
Duncaniella muris JCM 33116 Type strain
"Edaphocola aurantiacus" JCM 32353 Proposed type strain
Edaphorhabdus rosea JCM 32366 Type strain
Ephemeroptericola cinctiostellae JCM 32722 Type strain
Eubacterium sp. JCM 32527
Faecalibacillus faecis JCM 32257 Type strain
Faecalibacillus intestinalis JCM 32256 Type strain
Falsochrobactrum shanghaiense JCM 32785 Type strain
Flavobacterium aquimarinum JCM 31930 Type strain
Flavobacterium knui JCM 32247 Type strain
"Flavobacterium parvum" JCM 32368 Proposed type strain
Flavobacterium sediminis JCM 32291 Type strain
Flavonifractor sp. JCM 32521
Formosa sp. JCM 16447
"Fusobacterium pseudoperiodonticum" JCM 33009 Proposed type strain
Gaetbulibacter sp. JCM 16524
Gemmobacter lutimaris JCM 32828 Type strain
Gluconobacter cerinus JCM 25108 Type strain
"Haloactinobacterium glacieicola" JCM 32923 Proposed type strain
Halomonas caseinilytica JCM 32859
Halomonas elongata JCM 32858
Halomonas elongata JCM 32862
Halomonas elongata JCM 32868
Halomonas halophila JCM 32864
Halomonas halophila JCM 32866
Halomonas smyrnensis JCM 32860
Halomonas smyrnensis JCM 32863
Halomonas smyrnensis JCM 32865
Halomonas smyrnensis JCM 32867
Herbivorax saccincola JCM 31827
Huakuichenia soli JCM 33576 Type strain
Hymenobacter agri JCM 32194 Type strain
"Hymenobacter daejeonensis" JCM 31885 Proposed type strain
"Hymenobacter daejeonensis" JCM 31886
Hymenobacter metallilatus JCM 32699 Type strain
Hymenobacter pomorum JCM 32193 Type strain
Hyphobacterium indicum JCM 32612 Type strain
Indiicoccus explosivorum JCM 31737 Type strain
Iodobacter ciconiae JCM 33283 Type strain
Jiangella rhizosphaerae JCM 32551 Type strain
Klebsiella huaxiensis JCM 32905 Type strain
Kribbella turkmenica JCM 32914 Type strain
Lactobacillus acetotolerans JCM 33214
"Lactobacillus jinshani" JCM 33270 Proposed type strain
Lactobacillus micheneri JCM 33323 Type strain
Lactobacillus quenuiae JCM 33324 Type strain
Lactobacillus salitolerans JCM 31331 Type strain
Lactobacillus timberlakei JCM 33325 Type strain
"Lautropia dentalis" JCM 33297 Proposed type strain
"Lentibacillus alimentarius" JCM 16521 Proposed type strain
Leptospira ellinghausenii JCM 32516 Type strain
Leptospira johnsonii JCM 32515 Type strain
Leptospira ryugenii JCM 32518 Type strain
Listeria ivanovii subsp. londoniensis JCM 32891 Type strain
Listeria monocytogenes JCM 32892 Type strain
Litorivita pollutaquae JCM 32715 Type strain
Longibaculum sp. JCM 32526
Longispora urticae JCM 33577 Type strain
Lucifera butyrica JCM 19373 Type strain
"Luteimonas dalianensis" JCM 18136 Proposed type strain
Luteimonas sp. JCM 16241
"Lysinibacillus yapensis" JCM 32871 Proposed type strain
"Lysobacter panacihumi" JCM 32168 Proposed type strain
"Lysobacter pedocola" JCM 31020 Proposed type strain
Lysobacter sp. JCM 16604
Maribacter litoralis JCM 32373 Type strain
Marinobacterium boryeongense JCM 31902 Type strain
Marinomonas piezotolerans JCM 32821 Type strain
Mesorhizobium sp. JCM 28279
Mesorhizobium sp. JCM 28715
"Methylobacillus caricis" JCM 32031 Proposed type strain
Methylobacterium currus JCM 32670 Type strain
Methylophaga muralis JCM 31520
"Methylophilus aquaticus" JCM 32032 Proposed type strain
Methylopila sp. JCM 28718
Microbacterium bovistercoris JCM 32662 Type strain
Microbispora triticiradicis JCM 33405 Type strain
Micromonospora caldifontis JCM 17126 Type strain
Micromonospora radicis JCM 32147 Type strain
Mobilicoccus caccae JCM 33578 Type strain
"Mucibacter soli" JCM 31190 Proposed type strain
Mucilaginibacter sp. JCM 16600
Mucilaginibacter sp. JCM 16602
Muribaculum intestinale JCM 33112
Muribaculum intestinale JCM 33113
Myroides sp. JCM 16589
Naumannella cuiyingiana JCM 33579 Type strain
Neisseria sp. JCM 16337
Neptuniibacter sp. JCM 15932
Nesterenkonia natronophila JCM 32100 Type strain
Nevskia lacus JCM 31888 Type strain
Niabella sp. JCM 16599
Nocardia mangyaensis JCM 32795 Type strain
Nocardia yunnanensis JCM 30082 Type strain
Nonlabens sp. JCM 16081
Nonomuraea lactucae JCM 32549 Type strain
Novosphingobium sp. JCM 28633
Novosphingobium sp. JCM 28639
Oceaniradius stylonematis JCM 32050 Type strain
Oceanobacillus piezotolerans JCM 32870 Type strain
Olsenella sp. JCM 32523
"Ornithinimicrobium panacihumi" JCM 32156 Proposed type strain
Oscillibacter sp. JCM 32522
Pacificimonas sp. JCM 16310
"Paenibacillus maysiensis" JCM 31028 Proposed type strain
"Paenibacillus psychroresistens" JCM 31243 Proposed type strain
Pandoraea sp. JCM 15667
"Paraburkholderia lacunae" JCM 32721 Proposed type strain
"Paraburkholderia panacihumi" JCM 32099 Proposed type strain
Paramuribaculum intestinale JCM 33114 Type strain
Paramuribaculum intestinale JCM 33115
Parashewanella tropica JCM 16653 Type strain
Pedobacter sp. JCM 16319
"Pedobacter sp." JCM 16320
Pedobacter sp. JCM 16321
Pedobacter sp. JCM 16322
Pedobacter sp. JCM 16323
Pedobacter sp. JCM 16324
Pedobacter sp. JCM 16325
Pedobacter sp. JCM 16326
Phaeocystidibacter luteus JCM 33360 Type strain
Phascolarctobacterium wakonense JCM 32899 Type strain
Phascolarctobacterium wakonense JCM 32900
Photobacterium chitinilyticum JCM 32689 Type strain
Pontibacter sp. JCM 16563
Pontibacter sp. JCM 16564
Pradoshia eiseniae JCM 32460 Type strain
Pragia fontium JCM 24417 Type strain
Prevotella cerevisiae JCM 30867 Type strain
Prevotella cerevisiae JCM 30868
Profundibacter amoris JCM 31874 Type strain
Providencia stuartii JCM 24298 Type strain
Pseudidiomarina sp. JCM 16452
Pseudoflavonifractor sp. JCM 32528
Pseudomonas asiatica JCM 32716 Type strain
Pseudomonas huaxiensis JCM 32907 Type strain
Pseudomonas laurentiana JCM 32154 Type strain
Pseudomonas pohangensis JCM 16393 Type strain
Pseudomonas sichuanensis JCM 32906 Type strain
Pseudomonas sp. JCM 16342
Pseudomonas umsongensis JCM 16394 Type strain
Pseudomonas urumqiensis JCM 32830 Type strain
"Pseudonocardia tritici" JCM 32388 Proposed type strain
Pseudosporangium sp. JCM 14711
Rarobacter sp. JCM 6860
Rarobacter sp. JCM 9465
Rarobacter sp. JCM 9467
Rarobacter sp. JCM 9468
Rarobacter sp. JCM 9469
Rhizobium aquaticum JCM 31760 Type strain
Rhizobium sp. JCM 28263
Rhizobium sp. JCM 28634
Rhizobium sp. JCM 28644
Rhizobium sp. JCM 28648
Rhizobium sp. JCM 28653
Rhizobium sp. JCM 28659
Rhizobium sp. JCM 28672
"Rhodanobacter ginsengiterrae" JCM 32167 Proposed type strain
Rhodophyticola porphyridii JCM 31537 Type strain
Roseicella frigidaeris JCM 32945 Type strain
Roseithermus saccariphilus JCM 32374 Type strain
Roseomonas sp. JCM 28683
Roseovarius faecimaris JCM 30757 Type strain
Rubrobacter indicoceani JCM 33406 Type strain
Ruegeria lutea JCM 30927 Type strain
Salinimicrobium sp. JCM 16150
Salinimicrobium sp. JCM 16308
"Sedimentisphaera cyanobacteriorum" JCM 19196 Proposed type strain
"Sedimentisphaera salicampi" JCM 31928
"Sedimentisphaera salicampi" JCM 31929 Proposed type strain
Serinicoccus sediminis JCM 32825 Type strain
Serinicoccus sp. JCM 31502
Shewanella baltica JCM 16449 Type strain
Shewanella psychromarinicola JCM 32089
Shewanella psychromarinicola JCM 32090 Type strain
Shimwellia blattae JCM 24308 Type strain
Siculibacillus lacustris JCM 31761 Type strain
Slackia sp. JCM 32529
Sphaerisporangium dianthi JCM 33407 Type strain
Sphingobium sp. JCM 28248
Sphingobium sp. JCM 28632
Sphingobium sp. JCM 28641
Sphingobium sp. JCM 28642
Sphingobium sp. JCM 28719
Sphingobium terrigena JCM 32762 Type strain
Sphingopyxis sp. JCM 28280
Sphingopyxis sp. JCM 28290
Sphingorhabdus pulchriflava JCM 32855 Type strain
Sphingosinithalassobacter portus JCM 32714 Type strain
Sporomusa sp. JCM 15643
"Streptococcus gwangjuense" JCM 33299 Proposed type strain
"Streptococcus periodonticum" JCM 33300 Proposed type strain
Streptomyces cadmiisoli JCM 32897 Type strain
"Streptomyces corynorhini" JCM 33171 Proposed type strain
Streptomyces dangxiongensis JCM 31053 Type strain
Streptomyces fodineus JCM 32404 Type strain
"Streptomyces lohii" JCM 14114
Streptomyces sp. JCM 31288
Streptosporangium corydalis JCM 33408 Type strain
Streptosporangium lutulentum JCM 33409 Type strain
Subtercola lobariae JCM 33410 Type strain
Tepidibacter sp. JCM 32064
Tessaracoccus rhinocerotis JCM 33580 Type strain
Thalassococcus profundi JCM 31873 Type strain
"Thalassorhabdus aurantiaca" JCM 31732 Proposed type strain
Thaumasiovibrio sp. JCM 16053
Thermosipho sp. JCM 15324
"Thermus sediminis" JCM 33570 Proposed type strain
Thermus tenuipuniceus JCM 30350 Type strain
Thermus thermophilus JCM 33047
Thermus thermophilus JCM 33048
"Uliginosibacterium sangjuense" JCM 31375 Proposed type strain
Undibacterium piscinae JCM 33224 Type strain
Unidentified bacterium JCM 31639
Variovorax boronicumulans JCM 18805 Type strain
Vibrio anguillarum JCM 33359 Type strain
Vibrio harveyi JCM 33361 Type strain
Winogradskyella sp. JCM 16151
Winogradskyella sp. JCM 16309
Xanthomonas sp. JCM 16245
Xanthomonas sp. JCM 16246
Yokenella regensburgei JCM 16257
Zavarzinia aquatilis JCM 32263 Type strain
Zhongshania marina JCM 17372 Type strain
"Zunongwangia flava" JCM 32262 Proposed type strain
Archaea
"Conexivisphaera calidus" JCM 31663
Halalkaliarchaeum desulfuricum JCM 30664 Type strain
Haloarcula sebkhae JCM 19018 Type strain
Halococcoides cellulosivorans JCM 31941 Type strain
Haloprofundus halophilus JCM 30670 Type strain
Halorussus litoreus JCM 31109 Type strain
Methanobacterium sp. JCM 32063
Methanofervidicoccus abyssi JCM 32161 Type strain
"Natrarchaeobius chitinivorans" JCM 32476 Proposed type strain
"Natrarchaeobius halalkaliphilus" JCM 32477 Proposed type strain
Natronolimnobius sulfurireducens JCM 30663 Type strain
"Natronolimnobius sulfurreducens" JCM 17580
"Zestosphaera tikiterensis" JCM 32895 Proposed type strain
Fungi
Aspergillus luchuensis JCM 5628
Aspergillus tubingensis JCM 2610
Byssochlamys fulva JCM 12787 ex-neotype strain
Collapsimycopappus styracis JCM 32503
Collapsimycopappus styracis JCM 32504 ex-holotype strain
Collapsimycopappus styracis JCM 32505
Collapsimycopappus styracis JCM 32506
Collapsimycopappus styracis JCM 32507
Collapsimycopappus styracis JCM 32508
Colletotrichum shisoi JCM 31818 ex-holotype strain
Crassiclypeus aquaticus JCM 13087 ex-holotype strain
Crassiperidium octosporum JCM 17827 ex-holotype strain
Crassiperidium quadrisporum JCM 32442 ex-holotype strain
Diaporthe oculi JCM 32617 ex-holotype strain
Diaporthe pseudooculi JCM 32616 ex-holotype strain
Endocalyx melanoxanthus var. grossus JCM 32411
Endocalyx melanoxanthus var. grossus JCM 32997
Endocalyx melanoxanthus var. grossus JCM 32998
Endocalyx melanoxanthus var. grossus JCM 33339
Hypomyces cervinigenus JCM 19980
Hypomyces cervinigenus JCM 19981
Hypomyces cervinigenus JCM 19982
Hypomyces stephanomatis JCM 19978
Hypomyces stephanomatis JCM 19979
Leptoparies palmarum JCM 13089 ex-holotype strain
Metarhizium aciculare JCM 33284 ex-holotype strain
Metarhizium aciculare JCM 33285
Metarhizium aciculare JCM 33286
Mortierella sugadairana JCM 33091
Nannizzia gypsea JCM 22642
Oidiodendron sp. JCM 28188
Pseudolophiostoma cornisporum JCM 32348 ex-holotype strain
Pseudolophiostoma obtusisporum JCM 32349 ex-holotype strain
Pseudopaucispora brunneospora JCM 32350 ex-holotype strain
Vaginatispora amygdali JCM 32351 ex-holotype strain
Vaginatispora scabrispora JCM 32352 ex-holotype strain
Yamadazyma sp. JCM 31067
Yamadazyma sp. JCM 31068
Yamadazyma sp. JCM 31069
Algae
Prototheca paracutis JCM 32111
Prototheca paracutis JCM 32112 ex-type strain
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2019.11.08
