JCM On-line Catalogue of Strains

 Scientific name 1
    Example 1: Genus = Micromonospora
Example 2: Species = aurantiaca
Example 3: Genus = %monospo, Species = %ensis
(Prefix match search at each box. Inside match or suffix match search can be performed by using "%" as a wild-card character like Example 3. Case-insensitive)

 Scientific name 2
 Scientific name:
    Example 1: Scientific name = Micromonospora chalcea
Example 2: Scientific name = Lactobacillus paracasei subsp. paracasei
(Prefix match search. Inside match or suffix match search can be performed by using "%" as a wild-card character. Case-insensitive)

 JCM accession number
    Example: JCM = 12345 (Exact match search)

 Accession number of other culture collection
    Example 1: Acronym = DSM, Number = 43067
Example 2: Acronym = VKM, Number = Ac-636
(Exact match search at both boxes. Case-sensitive)

    Example: Keyword = genome sequence
(Inside match search. Case-insensitive)

 Culture medium
 JCM Medium No.:
 Name of Medium:
    Example 1: JCM Medium No. = 58
Example 2: Name of Medium = malt extract
(Exact match search for "JCM Medium No." and inside match search for "Name of Medium". Case-insensitive)

Genome sequencing of JCM strains under the NBRP program (Prokaryotes)

JCM determined draft genome sequences of various strains of bacterial and archaea listed below, in collaboration with Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, the University of Tokyo. The genome sequencing was supported by the FY2012 Genome Information Upgrading Program of National BioResource Project (NBRP). The sequenced microbial strains and their genome DNAs are available from RIKEN BRC-JCM and RIKEN BRC-DNA Bank, respectively. The organisms in the lists are alphabetically arranged by phylum, genus and species names, in this order.
Domain Archaea
Phylum Crenarchaeota
Phylum Euryarchaeota
Domain Bacteria
Phylum Actinobacteria
Phylum Bacteroidetes
Phylum Deinococcus-Thermus
Phylum Firmicutes
Phylum Nitrospirae
Phylum Proteobacteria
Phylum Verrucomicrobia


Domain Archaea

Scientific name JCM accession no. BioProject ID JGD no.
Phylum Crenarchaeota
 Aeropyrum camini JCM 12091T PRJDB807 JGD12587
 Metallosphaera hakonensis JCM 8857T PRJDB782 JGD12564
 Sulfolobus metallicus JCM 9184T PRJDB806 JGD12586
 Sulfolobus sp. JCM 16833 PRJDB820 JGD12598
 Thermocladium modestius JCM 10088T PRJDB787 JGD08742
 Vulcanisaeta distributa JCM 11213 PRJDB828 JGD12605
 Vulcanisaeta distributa JCM 11215 PRJDB829 JGD12606
 Vulcanisaeta distributa JCM 11216 PRJDB790 JGD12570
 Vulcanisaeta distributa JCM 11217 PRJDB791 JGD12571
 Vulcanisaeta souniana JCM 11219T PRJDB792 JGD12572
 Vulcanisaeta sp. JCM 16159 PRJDB850
Phylum Euryarchaeota
 Acidiplasma cupricumulans JCM 13668T PRJDB847 JGD12592
 Methanobacterium formicicum JCM 10132T PRJDB899 JGD12633
 Methanobrevibacter arboriphilus JCM 13429T PRJDB900 JGD12634
 Methanobrevibacter arboriphilus JCM 9315 PRJDB785 JGD12567
 Methanoculleus chikugoensis JCM 10825T PRJDB789
 Methanogenium cariaci JCM 10550T PRJDB788 JGD12569
 Methanosarcina barkeri JCM 10043T PRJDB882 JGD12632
 Methanosarcina horonobensis JCM 15518T PRJDB832 JGD12610
 Methanosarcina mazei JCM 9314 PRJDB784 JGD12566
 Natronolimnobius baerhuensis JCM 12253T PRJDB831 JGD12608
 Thermococcus celer JCM 8558T PRJDB783 JGD12565
 Thermococcus peptonophilus JCM 9653T PRJDB786 JGD12568
 Thermococcus sp. JCM 11816 PRJDB830 JGD12607
 Thermogymnomonas acidicola JCM 13583T PRJDB825 JGD12591


Domain Bacteria

Scientific name JCM accession no. BioProject ID JGD no.
Phylum Actinobacteria
 “Brevibacterium pakistanensis” JCM 18882 PRJDB951 JGD12667
 Aciditerrimonas ferrireducens JCM 15389T PRJDB816
 Actinotalea fermentans JCM 9966T PRJDB966 JGD12698
 Agromyces mediolanus JCM 9631 PRJDB944 JGD12682
 Agromyces ulmi JCM 13315T PRJDB930 JGD12669
 Arthrobacter nitroguajacolicus JCM 14115T PRJDB934 JGD12672
 Arthrobacter sp. JCM 19049 PRJDB1621
 Bifidobacterium bifidum JCM 1254 PRJDB801 JGD08546
 Bifidobacterium breve JCM 1192T PRJDB770 JGD12552
 Cellulomonas chitinilytica JCM 16927T PRJDB978 JGD12710
 Cellulomonas composti JCM 14898T PRJDB970 JGD12702
 Cellulomonas denverensis JCM 14733T PRJDB982
 Cellulomonas hominis JCM 12133T PRJDB981 JGD12713
 Cellulomonas iranensis JCM 18110T PRJDB979 JGD12711
 Cellulomonas pakistanensis JCM 18755T PRJDB995 JGD12714
 Cellulomonas persica JCM 18111T PRJDB980 JGD12712
 Cellulomonas sp. JCM 9808 PRJDB889 JGD12641
 Conexibacter sp. JCM 18997 PRJDB908 JGD12652
 Isoptericola sp. JCM 19051 PRJDB1623
 Isoptericola variabilis JCM 11754T PRJDB956 JGD12691
 Janibacter terrae JCM 12887 PRJDB961 JGD12696
 Kineosporia mikuniensis JCM 9961T PRJDB1006 JGD12734
 Kineosporia rhizophila JCM 9960T PRJDB1005 JGD12733
 Nesterenkonia sp. JCM 19054 PRJDB1624
 Nocardioides nitrophenolicus JCM 10703T PRJDB946 JGD12684
 Nocardioides sp. JCM 16518 PRJDB890 JGD12642
 Propionibacterium acnes JCM 18909 PRJDB915 JGD12656
 Propionibacterium acnes JCM 18916 PRJDB916 JGD12657
 Propionibacterium acnes JCM 18918 PRJDB917 JGD12658
 Propionibacterium acnes JCM 18920 PRJDB918 JGD12659
 Rhodococcus erythropolis JCM 9803 PRJDB891 JGD12643
 Rhodococcus erythropolis JCM 9804 PRJDB926 JGD12631
 Rhodococcus erythropolis JCM 9805 PRJDB892 JGD12644
 Rhodococcus qingshengii JCM 15477T PRJDB938 JGD12676
 Thermobifida fusca JCM 3263T PRJDB963 JGD07551
 Xylanimicrobium pachnodae JCM 13526T PRJDB968 JGD12700
Phylum Bacteroidetes
 Algibacter lectus JCM 19300 PRJDB1684
 Algoriphagus boritolerans JCM 18970T PRJDB928
 Bacteroides acidifaciens JCM 10556T PRJDB562 JGD12415
 Bacteroides barnesiae JCM 13652T PRJDB577 JGD12428
 Bacteroides faecichinchillae JCM 17102T PRJDB601 JGD12452
 Bacteroides fragilis JCM 11017 PRJDB564 JGD12416
 Bacteroides gallinarum JCM 13658T PRJDB578 JGD12429
 Bacteroides graminisolvens JCM 15093T PRJDB586 JGD12437
 Bacteroides massiliensis JCM 13223T PRJDB570 JGD12423
 Bacteroides nordii JCM 12987T PRJDB566 JGD12422
 Bacteroides paurosaccharolyticus JCM 15092T PRJDB585 JGD12436
 Bacteroides propionicifaciens JCM 14649T PRJDB582 JGD12433
 Bacteroides pyogenes JCM 10003 PRJDB560 JGD12413
 Bacteroides pyogenes JCM 6292 PRJDB556 JGD12409
 Bacteroides pyogenes JCM 6294T PRJDB557 JGD12410
 Bacteroides reticulotermitis JCM 10512T PRJDB561 JGD12414
 Bacteroides rodentium JCM 16496T PRJDB600 JGD12451
 Bacteroides salyersiae JCM 12988T PRJDB579 JGD12430
 Bacteroides sartorii JCM 16497 PRJDB626 JGD12477
 Bacteroides sartorii JCM 17136T PRJDB603 JGD12454
 Bacteroides stercorirosoris JCM 17103T PRJDB602 JGD12453
 Saccharicrinis fermentans JCM 21142T PRJDB624 JGD12475
 Dysgonomonas hofstadii JCM 17038T PRJDB873 JGD12532
 Geofilum rubicundum JCM 15548T PRJDB678 JGD12525
 Jejuia pallidilutea JCM 19301 PRJDB1685
 Jejuia pallidilutea JCM 19302 PRJDB1686
 Marinifilum fragile JCM 15579T PRJDB679 JGD12526
 Marinilabilia salmonicolor JCM 21150T PRJDB629 JGD12480
 Porphyromonas bennonis JCM 16335T PRJDB625 JGD12476
 Porphyromonas cangingivalis JCM 15983T PRJDB608 JGD12459
 Porphyromonas gingivicanis JCM 15907T PRJDB614 JGD12465
 Porphyromonas macacae JCM 13914T PRJDB607 JGD12458
 Porphyromonas macacae JCM 15984 PRJDB609 JGD12460
 Porphyromonas uenonis JCM 13868T PRJDB580 JGD12431
 Prevotella albensis JCM 12258T PRJDB569 JGD06677
 Prevotella amnii JCM 14753T PRJDB583 JGD12434
 Prevotella aurantiaca JCM 15754T PRJDB596 JGD12447
 Prevotella baroniae JCM 13447T PRJDB571 JGD12424
 Prevotella corporis JCM 8529T PRJDB559 JGD12412
 Prevotella dentasini JCM 15908T PRJDB597 JGD12448
 Prevotella denticola JCM 13449T PRJDB574 JGD12425
 Prevotella disiens JCM 6334T PRJDB558 JGD12411
 Prevotella enoeca JCM 12259T PRJDB563 JGD12421
 Prevotella falsenii JCM 15124T PRJDB592 JGD12442
 Prevotella fusca JCM 17724T PRJDB605 JGD12456
 Prevotella histicola JCM 15637T PRJDB591 JGD12443
 Prevotella loescheii JCM 12249T PRJDB567 JGD12418
 Prevotella maculosa JCM 15638T PRJDB593 JGD12444
 Prevotella marshii JCM 13450T PRJDB576 JGD12426
 Prevotella micans JCM 16134T PRJDB598 JGD12449
 Prevotella nanceiensis JCM 15639T PRJDB594 JGD12445
 Prevotella oris JCM 12252T PRJDB568 JGD12419
 Prevotella oulorum JCM 14966T PRJDB584 JGD12435
 Prevotella paludivivens JCM 13650T PRJDB575 JGD12427
 Prevotella pleuritidis JCM 14110T PRJDB581 JGD12432
 Prevotella saccharolytica JCM 17484T PRJDB604 JGD12455
 Prevotella scopos JCM 17725T PRJDB606 JGD12457
 Prevotella shahii JCM 12083T PRJDB565 JGD12417
 Prevotella timonensis JCM 15640T PRJDB595 JGD12446
 Prevotella veroralis JCM 6290T PRJDB555 JGD12310
 Prolixibacter bellariivorans JCM 13498T PRJDB628 JGD12479
 Rhodothermus marinus JCM 9785 PRJDB841 JGD12124
Phylum Deinococcus-Thermus
 “Thermus kawarayensis” JCM 12314T PRJDB793 JGD12573
 Thermus sp. JCM 17653 PRJDB795 JGD12575
Phylum Firmicutes
 “Gracilibacillus pakistanensis” JCM 18860 PRJDB983 JGD12622
 “Lysinibacillus pakistanensis” JCM 18776T PRJDB846 JGD12576
 Bacillus akibai JCM 9157T PRJDB671 JGD12519
 Bacillus boroniphilus JCM 21738T PRJDB823 JGD12602
 Bacillus hemicellulosilyticus JCM 9152T PRJDB669 JGD12517
 Bacillus mannanilyticus JCM 10596T PRJDB653 JGD12501
 Bacillus sp. JCM 19034 PRJDB1710
 Bacillus sp. JCM 19035 PRJDB1631
 Bacillus sp. JCM 19041 PRJDB1615
 Bacillus sp. JCM 19045 PRJDB1617
 Bacillus sp. JCM 19046 PRJDB1618
 Bacillus sp. JCM 19047 PRJDB1619
 Bacillus sp. JCM 19056 PRJDB1628
 Bacillus sp. JCM 19058 PRJDB1630
 Bacillus sp. JCM 19059 PRJDB1711
 Bacillus subtilis subsp. spizizenii JCM 2499 PRJDB894
 Bacillus wakoensis JCM 9140T PRJDB668 JGD12516
 Calditerricola satsumensis JCM 14719T PRJDB814 JGD12594
 Cellulosilyticum ruminicola JCM 14822T PRJDB815 JGD12334
 Clostridium glycyrrhizinilyticum JCM 13369 PRJDB757 JGD12536
 Clostridium josui JCM 17888T PRJDB756 JGD12535
 Clostridium sp. JCM 10519 PRJDB860 JGD12528
 Clostridium sp. JCM 10522 PRJDB861
 Clostridium sphenoides JCM 1415T PRJDB859 JGD12527
 Clostridium stercorarium subsp. thermolacticum JCM 9324 PRJDB755 JGD12534
 Clostridium straminisolvens JCM 21531T PRJDB821 JGD12600
 Coprobacillus cateniformis JCM 10604T PRJDB862 JGD12529
 Geomicrobium sp. JCM 19037 PRJDB1612
 Geomicrobium sp. JCM 19038 PRJDB1613
 Geomicrobium sp. JCM 19039 PRJDB1614
 Geomicrobium sp. JCM 19055 PRJDB1627
 Gracilibacillus boraciitolerans JCM 21714T PRJDB874 JGD12623
 Gracilibacillus sp. JCM 18966 PRJDB919 JGD12660
 Halolactibacillus sp. JCM 19043 PRJDB1616
 Lactobacillus acetotolerans JCM 3825T PRJDB802 JGD12582
 Lactobacillus acidophilus JCM 1132T PRJDB636 JGD07467
 Lactobacillus amylophilus JCM 1125T PRJDB799 JGD12579
 Lactobacillus apodemi JCM 16172T PRJDB651 JGD12500
 Lactobacillus camelliae JCM 13995T PRJDB765 JGD12546
 Lactobacillus casei JCM 1134T PRJDB638 JGD12311
 Lactobacillus collinoides JCM 1123T PRJDB897 JGD12537
 Lactobacillus composti JCM 14202T PRJDB649 JGD12497
 Lactobacillus crispatus JCM 1185T PRJDB800 JGD12580
 Lactobacillus curvatus JCM 1096T PRJDB798 JGD12578
 Lactobacillus delbrueckii subsp. bulgaricus JCM 1002T PRJDB769 JGD12551
 Lactobacillus delbrueckii subsp. delbrueckii JCM 1012T PRJDB634 JGD12485
 Lactobacillus equi JCM 10991T PRJDB647 JGD12495
 Lactobacillus equicursoris JCM 14600T PRJDB804 JGD12584
 Lactobacillus equigenerosi JCM 14505T PRJDB774 JGD12556
 Lactobacillus farraginis JCM 14108T PRJDB599 JGD12450
 Lactobacillus floricola JCM 16512T PRJDB778 JGD12560
 Lactobacillus florum JCM 16035T PRJDB766 JGD12548
 Lactobacillus fuchuensis JCM 11249T PRJDB648 JGD12496
 Lactobacillus gallinarum JCM 2011T PRJDB621 JGD12472
 Lactobacillus gasseri JCM 1131T PRJDB635 JGD07468
 Lactobacillus hamsteri JCM 6256T PRJDB644 JGD12492
 Lactobacillus hayakitensis JCM 14209T PRJDB650 JGD12498
 Lactobacillus hokkaidonensis JCM 18461T PRJDB780 JGD12562
 Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985T PRJDB645 JGD12493
 Lactobacillus kefiranofaciens subsp. kefirgranum JCM 8572T PRJDB772 JGD12554
 Lactobacillus kefiri JCM 5818T PRJDB803 JGD12583
 Lactobacillus kimchicus JCM 15530T PRJDB924 JGD12665
 Lactobacillus kisonensis JCM 15041T PRJDB776 JGD12558
 Lactobacillus kitasatonis JCM 1039T PRJDB640 JGD12488
 Lactobacillus lindneri JCM 11027T PRJDB761 JGD12542
 Lactobacillus manihotivorans JCM 12514T PRJDB763 JGD12544
 Lactobacillus nasuensis JCM 17158T PRJDB768 JGD12550
 Lactobacillus nodensis JCM 14932T PRJDB652 JGD12499
 Lactobacillus odoratitofui JCM 15043T PRJDB923 JGD12664
 Lactobacillus oryzae JCM 18671T PRJDB781 JGD12563
 Lactobacillus otakiensis JCM 15040T PRJDB775 JGD12557
 Lactobacillus ozensis JCM 17196T PRJDB779 JGD12561
 Lactobacillus pantheris JCM 12539T PRJDB764 JGD12545
 Lactobacillus paracollinoides JCM 11969T PRJDB762 JGD12543
 Lactobacillus parafarraginis JCM 14109T PRJDB773 JGD12555
 Lactobacillus paralimentarius JCM 10415T PRJDB646 JGD12494
 Lactobacillus paralimentarius JCM 10707 PRJDB760 JGD12541
 Lactobacillus plantarum subsp. plantarum JCM 1149T PRJDB641 JGD12489
 Lactobacillus rapi JCM 15042T PRJDB777 JGD12559
 Lactobacillus rhamnosus JCM 1136T PRJDB639 JGD12487
 Lactobacillus sakei subsp. sakei JCM 1157T PRJDB642 JGD12490
 Lactobacillus saniviri JCM 17471T PRJDB805 JGD12585
 Lactobacillus satsumensis JCM 12392T PRJDB826 JGD12603
 Lactobacillus senioris JCM 17472T PRJDB827 JGD12604
 Lactobacillus sharpeae JCM 1186T PRJDB758 JGD12538
 Lactobacillus silagei JCM 19001T PRJDB925 JGD12666
 Lactobacillus similis JCM 2765T PRJDB759 JGD12539
 Lactobacillus sucicola JCM 15457T PRJDB622 JGD12473
 Lactobacillus thailandensis JCM 13996T PRJDB898 JGD12547
 Lactococcus fujiensis JCM 16395T PRJDB767 JGD12549
 Lactococcus lactis subsp. lactis JCM 5805T PRJDB643 JGD12491
 Lactococcus lactis subsp. lactis JCM 7638 PRJDB771 JGD12553
 Lentibacillus juripiscarius JCM 12147T PRJDB808 JGD12588
 Lysinibacillus boronitolerans JCM 21713T PRJDB822 JGD12601
 Lysinibacillus parviboronicapiens JCM 18861T PRJDB797 JGD12577
 Oceanobacillus sp. JCM 19060 PRJDB1712
 Paenibacillus pini JCM 16418T PRJDB674 JGD12522
 Paenibacillus pinihumi JCM 16419T PRJDB844 JGD12621
 Paenibacillus sp. JCM 10914 PRJDB672 JGD12520
 Paenibacillus sp. JCM 16163 PRJDB879 JGD12628
 Paenibacillus sp. JCM 18996 PRJDB911 JGD12655
 Paenibacillus sp. JCM 9795 PRJDB877 JGD12626
 Paenibacillus sp. JCM 9796 PRJDB878 JGD12627
 Piscibacillus salipiscarius JCM 13188T PRJDB812
 Ruminococcus champanellensis JCM 17042T PRJDB896 JGD12251
 Ruminococcus faecis JCM 15917T PRJDB872 JGD12531
 Staphylococcus aureus subsp. aureus JCM 2151 PRJDB840 JGD07701
 Staphylococcus aureus subsp. aureus JCM 2413 PRJDB676 JGD06277
 Staphylococcus epidermidis JCM 2414T PRJDB677 JGD07463
 Syntrophomonas palmitatica JCM 14374T PRJDB813 JGD12593
 Tetragenococcus halophilus JCM 19268 PRJDB1702
 Tetragenococcus halophilus JCM 19269 PRJDB1703
 Thalassobacillus sp. JCM 19033 PRJDB1709
 Thermaerobacter composti JCM 15650T PRJDB817 JGD12595
 Thermoanaerobacter thermocopriae JCM 7501T PRJDB754 JGD12533
 Veillonella denticariosi JCM 15641T PRJDB870 JGD12530
 Veillonella rogosae JCM 15642T PRJDB871
 Virgibacillus halodenitrificans JCM 12304T PRJDB673 JGD12521
Phylum Nitrospirae
 Thermodesulfovibrio aggregans JCM 13213T PRJDB833 JGD12612
Phylum Proteobacteria
 “Desulfovibrio brasiliensis” JCM 12178T PRJDB810 JGD12589
 Acetobacter okinawensis JCM 25146T PRJDB588 JGD12439
 Acetobacter papayae JCM 25143T PRJDB553 JGD12407
 Acetobacter persici JCM 25330T PRJDB590 JGD12440
 Acinetobacter baumannii JCM 6841T PRJDB620 JGD12471
 Aliivibrio fischeri JCM 18803T PRJDB881 JGD12630
 Asaia astilbes JCM 15831T PRJDB587 JGD12438
 Asaia platycodi JCM 25414T PRJDB613 JGD12464
 Asaia prunellae JCM 25354T PRJDB589 JGD12441
 Campylobacter jejuni subsp. jejuni JCM 2013 PRJDB627 JGD08023
 Desulfothermus okinawensis JCM 13304T PRJDB794 JGD12574
 Diaphorobacter nitroreducens JCM 11421T PRJDB660 JGD12508
 Enterobacter asburiae JCM 6051T PRJDB880 JGD12629
 Enterovibrio sp. JCM 19048 PRJDB1620
 Escherichia coli JCM 1649T PRJDB552 JGD12168
 Escherichia coli JCM 18426 PRJDB610 JGD12462
 Escherichia coli JCM 20135 PRJDB612 JGD07547
 Escherichia coli JCM 5491 PRJDB615 JGD12466
 Geobacter toluenoxydans JCM 15764T PRJDB818 JGD12596
 Komagataeibacter kakiaceti JCM 25156T PRJDB554 JGD12408
 Halomonas sp. JCM 19031 PRJDB1610
 Halomonas sp. JCM 19032 PRJDB1611
 Helicobacter pylori JCM 12093T PRJDB893 JGD07707
 Klebsiella pneumoniae subsp. pneumoniae JCM 1662T PRJDB619 JGD07706
 Klebsiella pneumoniae subsp. pneumoniae JCM 20051 PRJDB902 JGD08997
 Kordiimonas gwangyangensis JCM 12864T PRJDB656 JGD12504
 Kosakonia cowanii JCM 10956T PRJDB901 JGD12645
 Legionella pneumophila subsp. pneumophila JCM 7571T PRJDB623 JGD12474
 Methylobacillus glycogenes JCM 2850T PRJDB658 JGD12506
 Methylogaea oryzae JCM 16910T PRJDB848 JGD12599
 Methylomonas koyamae JCM 16701T PRJDB819 JGD12597
 Nitratireductor aquibiodomus JCM 21793T PRJDB654 JGD12503
 Photobacterium sp. JCM 19050 PRJDB1622
 Pseudomonas aeruginosa JCM 14847 PRJDB618 JGD06292
 Pseudomonas aeruginosa JCM 5962T PRJDB616 JGD06291
 Pseudomonas aeruginosa JCM 6119 PRJDB617 JGD12468
 Pseudomonas pictorum JCM 9942T PRJDB659 JGD12507
 Pseudomonas putida JCM 18452 PRJDB837 JGD12615
 Pseudomonas putida JCM 18798 PRJDB838
 Pseudomonas putida JCM 9802 PRJDB836
 Pseudomonas tuomuerensis JCM 14085T PRJDB834 JGD12613
 Pseudovibrio denitrificans JCM 12308T PRJDB661 JGD12509
 Pseudovibrio sp. JCM 19062 PRJDB1714
 Psychrobacter sp. JCM 18900 PRJDB884 JGD12635
 Psychrobacter sp. JCM 18901 PRJDB885 JGD12636
 Psychrobacter sp. JCM 18902 PRJDB883 JGD12637
 Psychrobacter sp. JCM 18903 PRJDB886 JGD12638
 Salmonella enterica subsp. enterica JCM 1652 PRJDB611 JGD06236
 Shewanella algae JCM 21037T PRJDB633 JGD12484
 Shewanella haliotis JCM 14758T PRJDB630 JGD12481
 Shewanella marina JCM 15074T PRJDB631 JGD12482
 Shewanella putrefaciens JCM 20190T PRJDB632 JGD08112
 Shewanella sp. JCM 19057 PRJDB1629
 Silvimonas sp. JCM 19000 PRJDB910 JGD12654
 Sneathiella glossodoripedis JCM 23214T PRJDB657 JGD12505
 Vibrio sp. JCM 18904 PRJDB875 JGD12624
 Vibrio sp. JCM 18905 PRJDB876 JGD12625
 Vibrio sp. JCM 19052 PRJDB1625
 Vibrio sp. JCM 19053 PRJDB1626
 Vibrio sp. JCM 19061 PRJDB1713
 Vibrio sp. JCM 19063 PRJDB1716
 Vibrio sp. JCM 19231 PRJDB1673
 Vibrio sp. JCM 19232 PRJDB1704
 Vibrio sp. JCM 19233 PRJDB1705
 Vibrio sp. JCM 19236 PRJDB1708
 Vibrio sp. JCM 19238 PRJDB1675
 Vibrio sp. JCM 19241 PRJDB1678
Phylum Verrucomicrobia
 Verrucomicrobium spinosum JCM 18804T PRJDB920 JGD12661