{"id":5183,"date":"2024-11-06T17:13:14","date_gmt":"2024-11-06T08:13:14","guid":{"rendered":"http:\/\/jcm.brc.riken.jp\/en\/?page_id=5183"},"modified":"2024-11-06T17:13:14","modified_gmt":"2024-11-06T08:13:14","slug":"mn20241107","status":"publish","type":"page","link":"http:\/\/jcm.brc.riken.jp\/en\/mailnews_e\/mn20241107","title":{"rendered":"JCM Mail News (2024.11.07)"},"content":{"rendered":"
\r\n**********************************************************************\r\nRIKEN BioResource Research Center - Japan Collection of Microorganisms\r\n                      JCM Mail News (2024.11.07)\r\n**********************************************************************\r\n\r\nRIKEN BioResource Research Center - Japan Collection of Microorganisms\r\n(JCM) is pleased to update you with the latest information.\r\n\r\n======= Contents =====================================================\r\n- Special topic: Yeasts isolated from natural environments in\r\n                 Rishiri & Iriomote Islands, Japan\r\n- \"JCM BLAST Search\" released\r\n- Newly cataloged strains (2024.7.01 - 2024.10.31)\r\n======================================================================\r\n\r\n+---------------------------------------------------------------------\r\nSpecial topic: Yeasts isolated from natural environments in\r\n               Rishiri & Iriomote Islands, Japan\r\n+---------------------------------------------------------------------\r\nA series of 916 yeast strains isolated from natural environments in\r\nRishiri & Iriomote Islands, Japan, in the course of exploration of\r\nyeast species richness was deposited and stocked in JCM. The yeast\r\nstrains consist of more than 150 species, almost half of which were\r\nundescribed species at the time of the research project, representing\r\ntaxonomic richness of yeasts inhabiting in Japan (Takashima et al., 2012).\r\nThe yeast strain series includes high lipid producers, so called\r\noleaginous yeasts (Tanimura et al., 2014a), some of which have unique\r\ncharacteristics for applications. For example, Solicoccozyma terricola<\/i>\r\n(JCM 24514<\/a> and others; former name, Cryptococcus terricola<\/i>) and \r\nCystobasidium iriomotense<\/i> (JCM 24594T<\/sup><\/a> and others) have abilities to \r\nproduce lipids from soluble starch and from mixture of glucose and \r\nxylose, respectively (Tanimura et al., 2014b, 2018).\r\nThe series is a promising screening source for further applications\r\nwith unique characteristics. In addition, they would be utilized for\r\nbasic research in the fields of yeast taxonomic study and species\r\ndiversity in nature.\r\nList of yeast strains isolated from Rishiri and Iriomote Islands is\r\ndetailed in a webpage (https:\/\/www.jcm.riken.jp\/cgi-bin\/jcm\/rishiri_iriomote<\/a>).\r\nPlease contact us (inquiry.jcm@riken.jp<\/a>) with user instructions\r\n(https:\/\/jcm.brc.riken.jp\/en\/ordering_e<\/a>).\r\nWe welcome your request for distribution.\r\n\r\nReferences\r\n\r\nTakashima, M., Sugita, T., Van, B. H., Nakamura, M., Endoh, R.\r\nand Ohkuma, M.\r\nTaxonomic richness of yeasts in Japan within subtropical and cool\r\ntemperate areas.\r\nPLOS ONE 7: e50784, 2012.\r\nPMID: 23226383<\/a>.\r\nDOI: 10.1371\/journal.pone.0050784<\/a>.\r\n\r\nTanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M.,\r\nYamaguchi, S., Sakuradani, E., Ogawa, J. and Shima, J.\r\nSelection of oleaginous yeasts with high lipid productivity for\r\npractical biodiesel production.\r\nBioresour. Technol. 153:<\/b> 230-235, 2014a.\r\nPMID: 24368271<\/a>.\r\nDOI: 10.1016\/j.biortech.2013.11.086<\/a>.\r\n\r\nTanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M.,\r\nYamaguchi, S., Sakuradani, E., Ogawa, J., Ohkuma, M. and Shima, J.\r\nCryptococcus terricola<\/i> is a promising oleaginous yeast for\r\nbiodiesel production from starch through consolidated bioprocessing.\r\nSci. Rep. 4:<\/b> 4776, 2014b.\r\nPMID: 24758986<\/a>.\r\nDOI: 10.1038\/srep04776<\/a>.\r\n\r\nTanimura, A., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S.,\r\nOgawa, J., Shima, J. and Takashima, M.\r\nLipid production via simultaneous conversion of glucose and xylose by\r\na novel yeast, Cystobasidium iriomotense<\/i>.\r\nPLOS ONE 13:<\/b> e0202164, 2018.\r\nPMID: 30208038<\/a>.\r\nDOI: 10.1371\/journal.pone.0202164<\/a>.\r\n\r\nRikiya Endoh, curator of yeasts and yeast-like alga\r\n\r\n+---------------------------------------------------------------------\r\n\"JCM BLAST Search\" released\r\n+---------------------------------------------------------------------\r\n\"JCM BLAST search\" is now available. This feature allows you to search\r\nfor JCM strains (or equivalent strains) with genome sequences\r\nhomologous to your query sequence. At the present version, only\r\nprokaryotic strains are included.\r\n\r\nJCM BLAST search\r\nhttps:\/\/www.jcm.riken.jp\/JCM\/jcmblast\/en\/<\/a>\r\n\r\n+---------------------------------------------------------------------\r\nNewly cataloged strains (2024.07.01 - 2024.10.31)\r\n+---------------------------------------------------------------------\r\nBacteria\r\n\"Absicoccus intestinalis\"              JCM 37183<\/a>  Proposed type strain\r\nAcidihalobacter sp.                    JCM 30070<\/a>\r\n\"Adlercreutzia murintestinalis\"        JCM 37185<\/a>  Proposed type strain\r\nAdlercreutzia wanghongyangiae          JCM 37067<\/a>  Type strain\r\nAgromyces chromiiresistens             JCM 36199<\/a>  Type strain\r\n\"Aliirhizobium terrae\"                 JCM 35482<\/a>  Proposed type strain\r\n\"Alistipes muris\"                      JCM 37184<\/a>  Proposed type strain\r\n\"Alkalihalobacterium chitinilyticum\"   JCM 35078<\/a>  Proposed type strain\r\nAmycolatopsis carbonis                 JCM 30563<\/a>  Type strain\r\nAmycolatopsis cynarae                  JCM 35980<\/a>  Type strain\r\nAmycolatopsis nalaikhensis             JCM 30462<\/a>  Type strain\r\nAncylobacter mangrovi                  JCM 34924<\/a>  Type strain\r\nAquirufa regiilacus                    JCM 36347<\/a>  Type strain\r\nAquirufa regiilacus                    JCM 36348<\/a>\r\nArthrobacter horti                     JCM 36483<\/a>  Type strain\r\n\"Atrimonas thermophila\"                JCM 39389<\/a>  Proposed type strain\r\nAzoarcus sp.                           JCM 37161<\/a>\r\n\"Bartonella apihabitans\"               JCM 35029<\/a>  Proposed type strain\r\n\"Bartonella choladocola\"               JCM 35030<\/a>  Proposed type strain\r\nBiformimicrobium ophioploci            JCM 36221<\/a>  Type strain\r\nBlautia celeris                        JCM 37065<\/a>  Type strain\r\nBlautia intestinalis                   JCM 37171<\/a>  Type strain\r\nBlautia parvula                        JCM 37149<\/a>  Type strain\r\n\"Bovifimicola ammoniilytica\"           JCM 37190<\/a>  Proposed type strain\r\n\"Carboxydochorda subterranea\"          JCM 39509<\/a>  Proposed type strain\r\nChitinophaga pollutisoli               JCM 36644<\/a>  Type strain\r\nClostridium lamae                      JCM 35704<\/a>  Type strain\r\nCompanilactobacillus muriivasis        JCM 35891<\/a>  Type strain\r\nCoprococcus hominis                    JCM 37066<\/a>  Type strain\r\nCorynebacterium antarcticum            JCM 37218<\/a>  Type strain\r\nDolosigranulum savutiense              JCM 36673<\/a>  Type strain\r\nFaecalibacterium taiwanense            JCM 39529<\/a>  Type strain\r\n\"Flavobacterium agricola\"              JCM 34764<\/a>  Proposed type strain\r\nFlavobacterium panacagri               JCM 36132<\/a>  Type strain\r\nFlavobacterium psychrotrophum          JCM 32889<\/a>  Type strain\r\nFrateuria aurantia                     JCM 25126<\/a>\r\nFrateuria aurantia                     JCM 25127<\/a>\r\nFrateuria aurantia                     JCM 25129<\/a>\r\nFrateuria aurantia                     JCM 25130<\/a>\r\nFrateuria aurantia                     JCM 25131<\/a>\r\nFrateuria aurantia                     JCM 25132<\/a>\r\nFrateuria aurantia                     JCM 25133<\/a>\r\nFrateuria aurantia                     JCM 25134<\/a>\r\nFrateuria aurantia                     JCM 25135<\/a>\r\nFrateuria aurantia                     JCM 25136<\/a>\r\nFrateuria aurantia                     JCM 25137<\/a>\r\nFrateuria aurantia                     JCM 25138<\/a>\r\nFrateuria aurantia                     JCM 25139<\/a>\r\nFrateuria aurantia                     JCM 25140<\/a>\r\nFrateuria aurantia                     JCM 25141<\/a>\r\n\"Geochorda subterranea\"                JCM 39508<\/a>  Proposed type strain\r\nGilvirhabdus luticola                  JCM 36595<\/a>  Type strain\r\n\"Grylomicrobium aquisgranensis\"        JCM 37182<\/a>  Proposed type strain\r\n\"Halalkalibacter alkaliphilus\"         JCM 34004<\/a>  Proposed type strain\r\n\"Hymenobacter knuensis\"                JCM 31814<\/a>  Proposed type strain\r\n\"Intestinicryptomonas porci\"           JCM 37181<\/a>  Proposed type strain\r\nLacrimispora brassicae                 JCM 32810<\/a>  Type strain\r\nLacticaseibacillus casei               JCM 37179<\/a>\r\nLacticaseibacillus salsurivasis        JCM 35890<\/a>  Type strain\r\nLactiplantibacillus plantarum          JCM 37178<\/a>\r\nLimosilactobacillus fermentum          JCM 37180<\/a>\r\n\"Mangrovimicrobium sediminis\"          JCM 32136<\/a>  Proposed type strain\r\n\"Marinobacter apostichopi\"             JCM 36175<\/a>  Proposed type strain\r\n\"Massilioclostridium coli\"             JCM 37075<\/a>  Proposed type strain\r\nMetabacillus arenae                    JCM 34523<\/a>  Type strain\r\nMetabacillus sp.                       JCM 35039<\/a>\r\n\"Methylobacter svalbardensis\"          JCM 39463<\/a>  Proposed type strain\r\nNocardia endophytica                   JCM 37298<\/a>  Type strain\r\n\"Nocardioides bruguierae\"              JCM 34554<\/a>  Proposed type strain\r\nNocardioides renjunii                  JCM 33792<\/a>  Type strain\r\nNocardioides turkmenicus               JCM 33525<\/a>  Type strain\r\n\"Novosphingobium album\"                JCM 36177<\/a>  Proposed type strain\r\n\"Paracraurococcus lichenis\"            JCM 33121<\/a>  Proposed type strain\r\nParaflavitalea pollutisoli             JCM 36460<\/a>  Type strain\r\nParaglaciecola algarum                 JCM 34972<\/a>  Type strain\r\nParalimibaculum aggregatum             JCM 36220<\/a>  Type strain\r\n\"Parasutterella muris\"                 JCM 37186<\/a>  Proposed type strain\r\nPedobacter faecalis                    JCM 36003<\/a>  Type strain\r\n\"Petralouisia muris\"                   JCM 37187<\/a>  Proposed type strain\r\nPlanococcus liqunii                    JCM 36226<\/a>  Type strain\r\nPlanococcus shenhongbingii             JCM 36224<\/a>  Type strain\r\nPlanococcus shixiaomingii              JCM 36225<\/a>  Type strain\r\nPollutibacter soli                     JCM 36462<\/a>  Type strain\r\nPolluticoccus soli                     JCM 36463<\/a>  Type strain\r\n\"Porcipelethomonas ammoniilytica\"      JCM 37191<\/a>  Proposed type strain\r\n\"Pseudoalteromonas apostichopi\"        JCM 36173<\/a>  Proposed type strain\r\nPseudomonas beijingensis               JCM 35689<\/a>  Type strain\r\nPseudomonas paeninsulae                JCM 36637<\/a>  Type strain\r\nPseudomonas svalbardensis              JCM 36638<\/a>  Type strain\r\nPseudonocardia lacus                   JCM 34851<\/a>  Type strain\r\nPsychrosphaera algicola                JCM 34971<\/a>  Type strain\r\n\"Reichenbachiella agarivorans\"         JCM 35840<\/a>  Proposed type strain\r\n\"Reichenbachiella carrageenanivorans\"  JCM 35841<\/a>  Proposed type strain\r\n\"Reichenbachiella ulvae\"               JCM 35839<\/a>  Proposed type strain\r\nSaccharopolyspora soli                 JCM 33912<\/a>  Type strain\r\nSalinibacterium metalliresistens       JCM 36200<\/a>  Type strain\r\nSalinibacterium soli                   JCM 36421<\/a>  Type strain\r\n\"Senimuribacter intestinalis\"          JCM 37188<\/a>  Proposed type strain\r\nSphaerotilus microaerophilus           JCM 35424<\/a>  Type strain\r\nSphingobacterium luzhongxinii          JCM 33886<\/a>  Type strain\r\nSphingobacterium tenebrionis           JCM 36663<\/a>  Type strain\r\nSphingobacterium zhuxiongii            JCM 33600<\/a>  Type strain\r\nSphingobium arseniciresistens          JCM 36467<\/a>  Type strain\r\nSphingomonas endolithica               JCM 35386<\/a>  Type strain\r\nSphingomonas pollutisoli               JCM 36466<\/a>  Type strain\r\n\"Streptococcus nakanoensis\"            JCM 35953<\/a>  Proposed type strain\r\nStreptomyces camelliae                 JCM 35918<\/a>  Type strain\r\nStreptomyces cathayae                  JCM 36055<\/a>  Type strain\r\nStreptomyces luomodiensis              JCM 36555<\/a>  Type strain\r\n\"Streptomyces yongxingensis\"           JCM 34965<\/a>\r\nTepidibacillus marianensis             JCM 39431<\/a>  Type strain\r\nThalassotalea nanhaiensis              JCM 33808<\/a>  Type strain\r\n\"Thermatribacter velox\"                JCM 39351<\/a>  Proposed type strain\r\n\"Thiobacillus sedimenti\"               JCM 39443<\/a>  Proposed type strain\r\nThiopseudomonas acetoxidans            JCM 35747<\/a>  Type strain\r\n\"Tomitella fengzijianii\"               JCM 33467<\/a>  Proposed type strain\r\n\"Tomitella gaofuii\"                    JCM 34231<\/a>  Proposed type strain\r\nUnidentified bacterium                 JCM 39386<\/a>\r\nUnidentified bacterium                 JCM 39387<\/a>\r\nVagococcus jeotgali                    JCM 35937<\/a>  Type strain\r\nVariovorax sp.                         JCM 37046<\/a>\r\n\"Vibrio apostichopi\"                   JCM 36174<\/a>  Proposed type strain\r\n\r\nArchaea\r\nHalomarina halobia                     JCM 34147<\/a>  Type strain\r\nHalomarina litorea                     JCM 34908<\/a>  Type strain\r\nHalomarina ordinaria                   JCM 34148<\/a>  Type strain\r\nHalomarina pelagica                    JCM 34910<\/a>  Type strain\r\n\"Ignisphaera cupida\"                   JCM 39446<\/a>  Proposed type strain\r\n\"Methanimicrococcus hacksteinii\"       JCM 39383<\/a>  Proposed type strain\r\n\"Methanimicrococcus hongohii\"          JCM 39385<\/a>  Proposed type strain\r\n\"Methanimicrococcus stummii\"           JCM 39384<\/a>  Proposed type strain\r\nMethanobrevibacter curvatus            JCM 39452<\/a>  Type strain\r\n\"Methanolapillus africanus\"            JCM 39381<\/a>  Proposed type strain\r\n\"Methanolapillus millepedarum\"         JCM 39380<\/a>  Proposed type strain\r\n\"Methanolapillus ohkumae\"              JCM 39382<\/a>  Proposed type strain\r\nPromethearchaeum syntrophicum          JCM 39240<\/a>  Type strain\r\n\r\nFungi\r\nAsterotremella albida                  JCM 24503<\/a>\r\nBegerowomyces aurantius                JCM 33898<\/a>\r\nCryptococcus sp.                       JCM 24502<\/a>\r\nCryptococcus sp.                       JCM 24506<\/a>\r\nCryptococcus sp.                       JCM 24507<\/a>\r\nCryptococcus sp.                       JCM 24511<\/a>\r\nHannaella higashiohmiensis             JCM 24969<\/a>\r\nHannaella higashiohmiensis             JCM 25812<\/a>\r\nHannaella higashiohmiensis             JCM 25820<\/a>\r\nKalmanozyma fusiformata                JCM 24912<\/a>\r\nKalmanozyma fusiformata                JCM 25725<\/a>\r\nKalmanozyma fusiformata                JCM 25775<\/a>\r\nKalmanozyma fusiformata                JCM 25781<\/a>\r\nKalmanozyma fusiformata                JCM 25789<\/a>\r\nOgataea sp.                            JCM 24526<\/a>\r\nPapiliotrema flavescens                JCM 25798<\/a>\r\nPapiliotrema flavescens                JCM 25823<\/a>\r\nPapiliotrema flavescens                JCM 25885<\/a>\r\nPichia membranifaciens                 JCM 28210<\/a>\r\nRhodotorula sp.                        JCM 24513<\/a>\r\nRobbauera albescens                    JCM 28604<\/a>\r\nSaitozyma podzolica                    JCM 24505<\/a>\r\nSaitozyma podzolica                    JCM 24508<\/a>\r\nSaitozyma podzolica                    JCM 24510<\/a>\r\nSolicoccozyma terricola                JCM 24514<\/a>\r\nSolicoccozyma terricola                JCM 24515<\/a>\r\nSolicoccozyma terricola                JCM 24516<\/a>\r\nSolicoccozyma terricola                JCM 24517<\/a>\r\nSolicoccozyma terricola                JCM 24518<\/a>\r\nSolicoccozyma terricola                JCM 24519<\/a>\r\nSolicoccozyma terricola                JCM 24520<\/a>\r\nSolicoccozyma terricola                JCM 24521<\/a>\r\nSolicoccozyma terricola                JCM 24522<\/a>\r\nSolicoccozyma terricola                JCM 24523<\/a>\r\nSolicoccozyma terricola                JCM 28240<\/a>\r\nSpencermartinsiella japonica           JCM 35525<\/a>\r\nSpencermartinsiella japonica           JCM 35526<\/a>\r\nYamadazyma thunbergiae                 JCM 36746<\/a>\r\nYamadazyma thunbergiae                 JCM 36749<\/a>\r\n\r\n______________________________________________________________________\r\n*We hope you find the contents of this message of interest.  However,\r\n if you would prefer to unsubscribe from future e-mails, please send\r\n an e-mail to inquiry.jcm@riken.jp<\/a>. \r\n*If you have any questions or comments, please send an e-mail to\r\n inquiry.jcm@riken.jp<\/a>. \r\n*Content is subject to change without notice. \r\n*All Rights Reserved. \r\n______________________________________________________________________\r\nMicrobe Division \/ Japan Collection of Microorganisms\r\nRIKEN BioResource Research Center \r\n3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan\r\ninquiry.jcm@riken.jp<\/a>\r\nhttps:\/\/jcm.brc.riken.jp\/en\/<\/a>\r\nhttps:\/\/x.com\/RBRC_JCM_en<\/a>\r\nhttps:\/\/x.com\/RIKEN_BRC_en<\/a>\r\n______________________________________________________________________\r\n2024.11.07\r\n<\/font><\/tt><\/pre>\n","protected":false},"excerpt":{"rendered":"
********************************************************************** RIKEN BioResource Research Center – Japan Collection of Microorganisms JCM Mail News (2024.11.07) ********************************************************************** RIKEN BioResource Research Center – Japan Collection of Microorganisms (JCM) is pleased to update you with the latest information. ======= Contents ===================================================== – Special topic: Yeasts isolated from natural environments in Rishiri & Iriomote Islands, Japan – “JCM BLAST Search” released – Newly cataloged strains (2024.7.01 – 2024.10.31) ====================================================================== +——————————————————————— Special topic: Yeasts isolated from natural environments in Rishiri & Iriomote Islands, Japan +——————————————————————— A series of 916 yeast strains isolated from natural environments in Rishiri & Iriomote Islands, Japan, in the course of exploration of yeast species richness was deposited and stocked in JCM. The yeast strains consist of more than 150 species, almost half of which were undescribed species at the time of the research project, representing taxonomic richness of yeasts inhabiting in Japan (Takashima et al., 2012). The yeast strain series includes high lipid producers, so called oleaginous yeasts (Tanimura et al., 2014a), some of which have unique characteristics for applications. For example, Solicoccozyma terricola (JCM 24514 and others; former name, Cryptococcus terricola) and Cystobasidium iriomotense (JCM 24594T and others) have abilities to produce lipids from soluble starch and from mixture of […]<\/p>\n","protected":false},"author":17,"featured_media":0,"parent":3314,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","_seopress_robots_follow":"","_seopress_robots_imageindex":"","_seopress_robots_snippet":"","_seopress_robots_primary_cat":"","_seopress_robots_breadcrumbs":"","_seopress_robots_freeze_modified_date":"","_seopress_robots_custom_modified_date":"","_seopress_robots_canonical":"","_seopress_social_fb_title":"","_seopress_social_fb_desc":"","_seopress_social_fb_img":"","_seopress_social_fb_img_attachment_id":0,"_seopress_social_fb_img_width":0,"_seopress_social_fb_img_height":0,"_seopress_social_twitter_title":"","_seopress_social_twitter_desc":"","_seopress_social_twitter_img":"","_seopress_social_twitter_img_attachment_id":0,"_seopress_social_twitter_img_width":0,"_seopress_social_twitter_img_height":0,"_seopress_redirections_value":"","_seopress_redirections_enabled":"","_seopress_redirections_enabled_regex":"","_seopress_redirections_logged_status":"both","_seopress_redirections_param":"","_seopress_redirections_type":301,"_seopress_analysis_target_kw":"","footnotes":"","_wp_rev_ctl_limit":""},"class_list":["post-5183","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/5183","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/users\/17"}],"replies":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/comments?post=5183"}],"version-history":[{"count":1,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/5183\/revisions"}],"predecessor-version":[{"id":5186,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/5183\/revisions\/5186"}],"up":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/3314"}],"wp:attachment":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/media?parent=5183"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}