{"id":4730,"date":"2023-03-14T17:38:24","date_gmt":"2023-03-14T08:38:24","guid":{"rendered":"http:\/\/jcm.brc.riken.jp\/en\/?page_id=4730"},"modified":"2023-03-15T11:21:31","modified_gmt":"2023-03-15T02:21:31","slug":"mn20230315","status":"publish","type":"page","link":"http:\/\/jcm.brc.riken.jp\/en\/mailnews_e\/mn20230315","title":{"rendered":"JCM Mail News (2023.03.15)"},"content":{"rendered":"
\r\n**********************************************************************\r\nRIKEN BioResource Research Center - Japan Collection of Microorganisms\r\n                      JCM Mail News (2023.03.15)\r\n**********************************************************************\r\n\r\nRIKEN BioResource Research Center - Japan Collection of Microorganisms\r\n(JCM) is pleased to update you with the latest information.\r\n\r\n======= Contents =====================================================\r\n- Special topic: Obligate symbiotic, thermoacidophilic DPANN archaea\r\n                 capable of growing under aerobic conditions\r\n- Newly cataloged strains (2022.09.01 - 2023.02.28)\r\n======================================================================\r\n\r\n+---------------------------------------------------------------------\r\nSpecial topic: Obligate symbiotic, thermoacidophilic DPANN archaea\r\n               capable of growing under aerobic conditions\r\n+---------------------------------------------------------------------\r\nThe DPANN group is a superphylum-level archaeal clade, proposed in\r\n2013. This group is suggested to be one of the deepest branches in the\r\ndomain Archaea. DPANN archaea have been found in a variety of\r\nenvironments, including hot springs and soils, and are especially\r\ndominant in oligotrophic groundwater environments in some cases, but\r\ntheir ecological role is largely unknown. Although the genomes of\r\nnearly 1,000 species of DPANN archaea have been reported so far, only\r\nabout 10 species have been successfully cultured in the laboratory,\r\nand all of them require host organisms for their growth, i.e.,\r\nobligate symbiotic. The mechanism of their symbiosis has not been\r\nelucidated. Thus, DPANN archaea are of great interest to the\r\nphysiology, ecology, and evolution of life. Currently, two strains of\r\nthermoacidophilic DPANN archaea capable of growing under aerobic\r\nconditions are available from JCM.\r\n\r\nNanobdella aerobiophila<\/i> JCM 33616T<\/sup><\/a>\r\n\"Microcaldus variisymbioticus<\/i>\" JCM 33787T<\/sup><\/a>\r\n\r\nN. aerobiophila<\/i> JCM 33616T<\/sup><\/a> and \"M. variisymbioticus<\/i>\" JCM 33787T<\/sup><\/a> belong\r\nto the candidatus phyla \"Nanoarchaeota<\/i>\" and \"Microcaldota<\/i>\",\r\nrespectively. Both stains are obligate symbiotic and are provided as\r\nco-cultures with their host archaea.\r\n\r\nReferences:\r\nKato et al.\r\nNanobdella aerobiophila<\/i> gen. nov., sp. nov., a thermoacidophilic,\r\nobligate ectosymbiotic archaeon, and proposal of Nanobdellaceae<\/i> fam.\r\nnov., Nanobdellales<\/i> ord. nov. and Nanobdellia<\/i> class. nov.\r\nInt. J. Syst. Evol. Microbiol.<\/i> 72: 005489, 2022.\r\nDOI: 10.1099\/ijsem.0.005489<\/a>\r\n\r\nSakai et al.\r\nInsight into the symbiotic lifestyle of DPANN archaea revealed by\r\ncultivation and genome analyses.\r\nProc. Natl. Acad. Sci.<\/i> USA 119: e2115449119, 2022.\r\nDOI: 10.1073\/pnas.2115449119<\/a>\r\n\r\nShingo Kato Ph. D.\r\nCurator (Archaea and extremophiles)\r\n\r\n+---------------------------------------------------------------------\r\nNewly cataloged strains (2022.09.01 - 2023.02.28)\r\n+---------------------------------------------------------------------\r\nBacteria\r\n\"Acidilutibacter cellobiosedens\"       JCM 39087<\/a>  Proposed type strain\r\nAcidithiobacillus ferrooxidans         JCM 39192<\/a>\r\nAcinetobacter sp.                      JCM 18511<\/a>\r\nAcrocarpospora catenulata              JCM 34849<\/a>  Type strain\r\nAestuariicella albida                  JCM 34652<\/a>  Type strain\r\nAestuariispira ectoiniformans          JCM 34041<\/a>  Type strain\r\nAlcanivorax sp.                        JCM 18791<\/a>\r\nAliamphritea hakodatensis              JCM 34607<\/a>  Type strain\r\nAquiluna sp.                           JCM 32205<\/a>\r\nAquirufa aurantiipilula                JCM 34078<\/a>  Type strain\r\nAquirufa lenticrescens                 JCM 34077<\/a>  Type strain\r\nArthrobacter antioxidans               JCM 35246<\/a>  Type strain\r\nBerryella wangjianweii                 JCM 34748<\/a>  Type strain\r\nBlautia pseudococcoides                JCM 35243<\/a>  Type strain\r\n\"Brachybacterium halotolerans subsp.   JCM 34760<\/a>  Proposed type strain\r\nkimchii\"\r\nBrachybacterium kimchii                JCM 34759<\/a>  Type strain\r\n\"Brevundimonas fontaquae\"              JCM 34943<\/a>  Proposed type strain\r\nBrucepastera parasyntrophica           JCM 39134<\/a>  Type strain\r\nCaenimonas aquaedulcis                 JCM 34453<\/a>  Type strain\r\nChloroflexus aggregans                 JCM 39377<\/a>  Type strain\r\nChryseobacterium paridis               JCM 34636<\/a>  Type strain\r\nCognataquiflexum nitidum               JCM 34222<\/a>  Type strain\r\nCognataquiflexum rubidum               JCM 34612<\/a>  Type strain\r\nColwellia maritima                     JCM 35001<\/a>  Type strain\r\nCorynebacterium kalidii                JCM 35048<\/a>  Type strain\r\nCroceicoccus hydrothermalis            JCM 31508<\/a>  Type strain\r\nDeefgea salmonis                       JCM 35050<\/a>  Type strain\r\n\"Desulfolithobacter dissulfuricans\"    JCM 34117<\/a>  Proposed type strain\r\n\"Desulfopila corrodens\"                JCM 39320<\/a>\r\nFictibacillus marinisediminis          JCM 34437<\/a>  Type strain\r\nFlavihumibacter fluminis               JCM 34870<\/a>  Type strain\r\nFlavobacterium channae                 JCM 34998<\/a>  Type strain\r\nFlavobacterium cyclinae                JCM 34997<\/a>  Type strain\r\nFlavobacterium soyae                   JCM 34673<\/a>  Type strain\r\n\"Fundidesulfovibrio soli\"              JCM 35676<\/a>  Proposed type strain\r\n\"Geoalkalibacter halelectricus\"        JCM 35356<\/a>  Proposed type strain\r\nGordonia liuliyuniae                   JCM 34879<\/a>  Type strain\r\nGordonia zhenghanii                    JCM 34878<\/a>  Type strain\r\nGranulimonas faecalis                  JCM 35015<\/a>  Type strain\r\nHallella faecis                        JCM 34979<\/a>  Type strain\r\nHalomonas getboli                      JCM 35085<\/a>  Type strain\r\nHalorhodospira abdelmalekii            JCM 39379<\/a>  Type strain\r\nHalorhodospira halochloris             JCM 39378<\/a>  Type strain\r\nHephaestia mangrovi                    JCM 33125<\/a>  Type strain\r\nHyphomonas sediminis                   JCM 34658<\/a>  Type strain\r\nIdeonella aquatica                     JCM 34285<\/a>  Type strain\r\nJanibacter endophyticus                JCM 34639<\/a>  Type strain\r\nJiella flava                           JCM 34331<\/a>  Type strain\r\nLacticaseibacillus kribbianus          JCM 34953<\/a>  Type strain\r\nLactobacillus amylovorus               JCM 35777<\/a>\r\nLapidilactobacillus luobeiensis        JCM 35553<\/a>  Type strain\r\nLegionella lytica                      JCM 33226<\/a>\r\nLeptogranulimonas caecicola            JCM 35017<\/a>  Type strain\r\nLevilactobacillus humaensis            JCM 35554<\/a>  Type strain\r\n\"Levilactobacillus tujiorum\"           JCM 35210<\/a>  Proposed type strain\r\nLigilactobacillus pabuli               JCM 34518<\/a>  Type strain\r\nLimnohabitans australis                JCM 32223<\/a>\r\nListeria monocytogenes                 JCM 35698<\/a>\r\nLysobacter avium                       JCM 33223<\/a>  Type strain\r\nLysobacter ciconiae                    JCM 34832<\/a>  Type strain\r\nLysobacter selenitireducens            JCM 34786<\/a>  Type strain\r\nMangrovimonas futianensis              JCM 34871<\/a>  Type strain\r\nMangrovimonas futianensis              JCM 34872<\/a>\r\nMangrovimonas futianensis              JCM 34873<\/a>\r\nMarinilongibacter aquaticus            JCM 34683<\/a>  Type strain\r\nMegasphaera elsdenii                   JCM 35779<\/a>\r\nMetabacillus flavus                    JCM 34406<\/a>  Type strain\r\nMicromonospora antibiotica             JCM 34495<\/a>  Type strain\r\nMicromonospora humidisoli              JCM 34496<\/a>  Type strain\r\nMicrovirga puerhi                      JCM 35317<\/a>  Type strain\r\nMucilaginibacter robiniae              JCM 33062<\/a>  Type strain\r\nNeorhizobium xiangyangii               JCM 35100<\/a>  Type strain\r\nNiabella agricola                      JCM 34758<\/a>  Type strain\r\nNocardia sputi                         JCM 33932<\/a>  Type strain\r\nNocardioides campestrisoli             JCM 34307<\/a>  Type strain\r\nNocardioides ochotonae                 JCM 34185<\/a>  Type strain\r\n\"Nocardiopsis akebiae\"                 JCM 34708<\/a>  Proposed type strain\r\nNocardiopsis eucommiae                 JCM 34707<\/a>  Type strain\r\nOctadecabacter algicola                JCM 34969<\/a>  Type strain\r\nOctadecabacter dasysiphoniae           JCM 34973<\/a>  Type strain\r\nPaenibacillus agilis                   JCM 32775<\/a>  Type strain\r\nPaenibacillus rhizolycopersici         JCM 34488<\/a>  Type strain\r\nPaenibacillus sabuli                   JCM 34216<\/a>  Type strain\r\nPalleniella intestinalis               JCM 34697<\/a>  Type strain\r\nParachryseolinea silvisoli             JCM 35041<\/a>  Type strain\r\nParacoccus everestensis                JCM 35227<\/a>  Type strain\r\nPhotobacterium sp.                     JCM 31899<\/a>\r\nPolaribacter marinus                   JCM 35021<\/a>  Type strain\r\nPolymorphobacter megasporae            JCM 34545<\/a>  Type strain\r\nProteiniphilum propionicum             JCM 34753<\/a>  Type strain\r\nPseudomonas lijiangensis               JCM 35177<\/a>  Type strain\r\nPseudomonas paralcaligenes             JCM 34250<\/a>  Type strain\r\nRalstonia wenshanensis                 JCM 35178<\/a>  Type strain\r\nRhizobium populisoli                   JCM 34442<\/a>  Type strain\r\nRhodoluna lacicola                     JCM 32204<\/a>\r\nRodentibacter haemolyticus             JCM 35780<\/a>  Type strain\r\nRoseicella aerolata                    JCM 34449<\/a>  Type strain\r\nRoseococcus pinisoli                   JCM 34402<\/a>  Type strain\r\nRoseovarius carneus                    JCM 34778<\/a>  Type strain\r\nSaccharothrix luteola                  JCM 34800<\/a>  Type strain\r\nSalmonella enterica subsp. enterica    JCM 35086<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35087<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35088<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35089<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35090<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35091<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35092<\/a>\r\nSalmonella enterica subsp. enterica    JCM 35093<\/a>\r\nSecundilactobacillus angelensis        JCM 35209<\/a>  Type strain\r\nSegatella copri                        JCM 35349<\/a>\r\nSegatella copri                        JCM 35350<\/a>\r\nSegatella copri                        JCM 35351<\/a>\r\nSegatella copri                        JCM 35352<\/a>\r\n\"Sellimonas caecigallum\"               JCM 35759<\/a>  Proposed type strain\r\nShewanella violacea                    JCM 31900<\/a>\r\nSphingomonas citri                     JCM 34796<\/a>  Type strain\r\nSphingomonas citricola                 JCM 34795<\/a>  Type strain\r\nSphingomonas folii                     JCM 34794<\/a>  Type strain\r\nSphingomonas quercus                   JCM 34441<\/a>  Type strain\r\nSphingopyxis jiangsuensis              JCM 34678<\/a>  Type strain\r\n\"Sporosarcina beigongshangi\"           JCM 34409<\/a>  Proposed type strain\r\nStreptococcus alactolyticus            JCM 35778<\/a>\r\n\"Streptomyces akebiae\"                 JCM 34922<\/a>  Proposed type strain\r\nStreptomyces plumbidurans              JCM 35204<\/a>  Type strain\r\n\"Sulfurimonas aquatica\"                JCM 35004<\/a>  Proposed type strain\r\n\"Taurinivorans muris\"                  JCM 34262<\/a>\r\nTenacibaculum aquimarinum              JCM 35023<\/a>  Type strain\r\nThermospira aquatica                   JCM 31314<\/a>  Type strain\r\nUnidentified bacterium                 JCM 32221<\/a>\r\nUnidentified bacterium                 JCM 32222<\/a>\r\nUnidentified bacterium                 JCM 32224<\/a>\r\nVibrio salinus                         JCM 33626<\/a>  Type strain\r\nXiamenia xianingshaonis                JCM 34097<\/a>  Type strain\r\nXylanibacter muris                     JCM 34698<\/a>  Type strain\r\nXylanibacter rodentium                 JCM 34762<\/a>  Type strain\r\nZobellella iuensis                     JCM 34456<\/a>  Type strain\r\n\r\nArchaea\r\nHaladaptatus halobius                  JCM 34141<\/a>  Type strain\r\nHaladaptatus salinisoli                JCM 34142<\/a>  Type strain\r\nHalocatena salina                      JCM 32960<\/a>  Type strain\r\nHalogranum salarium                    JCM 35635<\/a>  Type strain\r\nHalorubrum salinarum                   JCM 35636<\/a>  Type strain\r\nHalosolutus amylolyticus               JCM 33558<\/a>  Type strain\r\nHalosolutus gelatinilyticus            JCM 33554<\/a>  Type strain\r\nHalosolutus halophilus                 JCM 30838<\/a>  Type strain\r\nMetallosphaera javensis                JCM 34702<\/a>  Type strain\r\nMethanobacterium alkalithermotolerans  JCM 31304<\/a>  Type strain\r\nMethanocaldococcus lauensis            JCM 39048<\/a>\r\nMethanocaldococcus lauensis            JCM 39049<\/a>  Type strain\r\nSala cibi                              JCM 34265<\/a>  Type strain\r\nSala cibi                              JCM 34266<\/a>\r\n\r\nFungi\r\nBensingtonia pseudonaganoensis         JCM 3927 <\/a>\r\nBulleribasidium variabile              JCM 7267 <\/a>\r\nDebaryomyces hansenii                  JCM 5204 <\/a>\r\nDebaryomyces hansenii                  JCM 5206 <\/a>\r\nGlobisporangium sp.                    JCM 30524<\/a>\r\nHamamotoa singularis                   JCM 5192 <\/a>\r\nHanseniaspora osmophila                JCM 34045<\/a>\r\nHanseniaspora osmophila                JCM 34052<\/a>\r\nHanseniaspora vineae                   JCM 34057<\/a>\r\nHanseniaspora vineae                   JCM 34058<\/a>\r\nKazachstania servazzii                 JCM 5207 <\/a>\r\nLipomyces oligophagus                  JCM 5199 <\/a>\r\nMeyerozyma guilliermondii              JCM 5210 <\/a>\r\nPapiliotrema laurentii                 JCM 12199<\/a>\r\nPhaeotremella translucens              JCM 32022<\/a>\r\nPhaeotremella translucens              JCM 32023<\/a>\r\nPseudotremella lacticolor              JCM 5946 <\/a>\r\nRhodotorula alborubescens              JCM 5191 <\/a>\r\nSirobasidium apiculatum                JCM 32018<\/a>\r\nSirobasidium apiculatum                JCM 32019<\/a>\r\nSirobasidium japonicum                 JCM 32020<\/a>\r\nSirobasidium japonicum                 JCM 32021<\/a>\r\nSporobolomyces johnsonii               JCM 6143 <\/a>\r\nSporobolomyces johnsonii               JCM 6144 <\/a>\r\nSporobolomyces johnsonii               JCM 6145 <\/a>\r\nSporobolomyces johnsonii               JCM 6146 <\/a>\r\nSporobolomyces johnsonii               JCM 6148 <\/a>\r\nSporobolomyces johnsonii               JCM 6149 <\/a>\r\nSporobolomyces johnsonii               JCM 6150 <\/a>\r\nStarmerella stellata                   JCM 34049<\/a>\r\nTorulaspora delbrueckii                JCM 34048<\/a>\r\nTorulaspora delbrueckii                JCM 34061<\/a>\r\nTrimorphomyces sakaeraticus            JCM 11901<\/a>\r\n\r\n______________________________________________________________________\r\n*We hope you find the contents of this message of interest.  However,\r\n if you would prefer to unsubscribe from future e-mails, please send\r\n an e-mail to inquiry.jcm@riken.jp<\/a>. \r\n*If you have any questions or comments, please send an e-mail to\r\n inquiry.jcm@riken.jp<\/a>. \r\n*Content is subject to change without notice. \r\n*All Rights Reserved. \r\n______________________________________________________________________\r\nMicrobe Division \/ Japan Collection of Microorganisms\r\nRIKEN BioResource Research Center \r\n3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan\r\ninquiry.jcm@riken.jp<\/a>\r\nhttps:\/\/jcm.brc.riken.jp\/en\/<\/a>\r\n______________________________________________________________________\r\n2023.03.15\r\n<\/font><\/tt><\/pre>\n","protected":false},"excerpt":{"rendered":"
********************************************************************** RIKEN BioResource Research Center – Japan Collection of Microorganisms JCM Mail News (2023.03.15) ********************************************************************** RIKEN BioResource Research Center – Japan Collection of Microorganisms (JCM) is pleased to update you with the latest information. ======= Contents ===================================================== – Special topic: Obligate symbiotic, thermoacidophilic DPANN archaea capable of growing under aerobic conditions – Newly cataloged strains (2022.09.01 – 2023.02.28) ====================================================================== +——————————————————————— Special topic: Obligate symbiotic, thermoacidophilic DPANN archaea capable of growing under aerobic conditions +——————————————————————— The DPANN group is a superphylum-level archaeal clade, proposed in 2013. This group is suggested to be one of the deepest branches in the domain Archaea. DPANN archaea have been found in a variety of environments, including hot springs and soils, and are especially dominant in oligotrophic groundwater environments in some cases, but their ecological role is largely unknown. Although the genomes of nearly 1,000 species of DPANN archaea have been reported so far, only about 10 species have been successfully cultured in the laboratory, and all of them require host organisms for their growth, i.e., obligate symbiotic. The mechanism of their symbiosis has not been elucidated. Thus, DPANN archaea are of great interest to the physiology, ecology, and evolution of life. Currently, two strains of […]<\/p>\n","protected":false},"author":17,"featured_media":0,"parent":3314,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","_seopress_robots_follow":"","_seopress_robots_imageindex":"","_seopress_robots_snippet":"","_seopress_robots_primary_cat":"","_seopress_robots_breadcrumbs":"","_seopress_robots_freeze_modified_date":"","_seopress_robots_custom_modified_date":"","_seopress_robots_canonical":"","_seopress_social_fb_title":"","_seopress_social_fb_desc":"","_seopress_social_fb_img":"","_seopress_social_fb_img_attachment_id":0,"_seopress_social_fb_img_width":0,"_seopress_social_fb_img_height":0,"_seopress_social_twitter_title":"","_seopress_social_twitter_desc":"","_seopress_social_twitter_img":"","_seopress_social_twitter_img_attachment_id":0,"_seopress_social_twitter_img_width":0,"_seopress_social_twitter_img_height":0,"_seopress_redirections_value":"","_seopress_redirections_enabled":"","_seopress_redirections_enabled_regex":"","_seopress_redirections_logged_status":"both","_seopress_redirections_param":"","_seopress_redirections_type":301,"_seopress_analysis_target_kw":"","footnotes":"","_wp_rev_ctl_limit":""},"class_list":["post-4730","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/4730","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/users\/17"}],"replies":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/comments?post=4730"}],"version-history":[{"count":2,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/4730\/revisions"}],"predecessor-version":[{"id":4737,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/4730\/revisions\/4737"}],"up":[{"embeddable":true,"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/3314"}],"wp:attachment":[{"href":"http:\/\/jcm.brc.riken.jp\/en\/wp-json\/wp\/v2\/media?parent=4730"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}