{"id":3848,"date":"2017-02-09T14:26:08","date_gmt":"2017-02-09T05:26:08","guid":{"rendered":"http:\/\/jcm.brc.riken.jp\/en\/?page_id=3848"},"modified":"2026-05-28T16:16:56","modified_gmt":"2026-05-28T07:16:56","slug":"publish_e","status":"publish","type":"page","link":"http:\/\/jcm.brc.riken.jp\/en\/publish_e","title":{"rendered":"List of Publications by JCM Members (since 1993)"},"content":{"rendered":"<div align=\"right\">Last update: May 28, 2026\n<\/div>\n<p><a name=\"2026\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2025\">2025<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2024\">2024<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2023\">2023<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2022\">2022<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2021\">2021<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"https:\/\/jcm.brc.riken.jp\/\">Return to the JCM Top Page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2026<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Kanno, N., Ohtani, T., Oda, N., Kato, S., Ohkuma, M., and Shigeto, S.<\/strong> 2026. Domain-level classification of archaea and bacteria using AI-assisted single-cell raman spectroscopy. ACS. Omega. <strong>11:<\/strong> 16913-16921. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41867523?dopt=Abstract\">41867523<\/a>.<\/p>\n<p><strong> Moriyama, T., Endo, C., Isagi, Y., Tanaka, C., Ohkuma, M., and Hashimoto, A.<\/strong> 2026. Rediscovery of &#8220;<em>Gloeocystis<\/em>-Halbflechte&#8221; after 84 years revealed an independent lineage of ascomycetes harboured in gelatinous algal biofilms. Fungal Biology. <strong>130:<\/strong> 101757. DOI: <a href=\"http:\/\/dx.doi.org\/10.1016\/j.funbio.2026.101757\">10.1016\/j.funbio.2026.101757<\/a>.<\/p>\n<p><strong>Kato, S., Masuda, S., Shibata, A., Itoh, T., Sakamoto, M., Shirasu, K. and Ohkuma, M.<\/strong> 2026. Whole-genome sequencing of diverse 351 cultured prokaryotes including as-yet-unsequenced type strains. Genome Res. <strong>36:<\/strong> 875-884. PMID:<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41946568?dopt=Abstract\">41946568<\/a>.<\/p>\n<p><strong>Yamamoto, E., Hisatomi, A., Miwa, K., Sakurai, N., Koizumi, A., Ohkuma, M., Tsuchihashi, H., and Sakamoto, M.<\/strong> 2026. Proposal of two novel species, <em>Allocoprococcus similis<\/em> gen. nov., sp. nov. and <em>Faecalimonas hominis<\/em> sp. nov., isolated from human faeces and genome-based reorganization of the genus <em>Coprococcus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>76:<\/strong> 007011. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41498776?dopt=Abstract\">41498776<\/a>.<\/p>\n<p><strong>Kanaya, R., Maeno, S., Hisatomi, A., Ohkuma, M., Sakamoto, M., and Endo, A.<\/strong> 2026. <em>Apilactobacillus pseudapinorum<\/em> sp. nov., isolated from polyfloral honey. Int. J. Syst. Evol. Microbiol. <strong>76:<\/strong> 007027. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41532972?dopt=Abstract\">41532972<\/a>.<\/p>\n<p><strong>Takahashi, K., Hisatomi, A., Mori, K., Yuki, M., Noda, S., Hongoh, Y., Ohkuma, M., and Sakamoto, M.<\/strong> 2026. Reclassification of the genus <em>Dysgonomonas<\/em> and description of <em>Dysgonomonas reticulitermitis<\/em> sp. nov. and <em>Viscerimonas tarda<\/em> gen. nov., sp. nov. from the gut of the subterranean termite <em>Reticulitermes speratus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>76:<\/strong> 007031. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41553856?dopt=Abstract\">41553856<\/a>.<\/p>\n<p><strong>Hisatomi, A., Ohkuma, M., and Sakamoto, M.<\/strong> 2026. <em>Hominimerdicola intestinalis<\/em> sp. nov. and <em>Ruminococcus sporogenes<\/em> sp. nov., isolated from human faeces, and reclassification of <em>Ruminococcus albus<\/em> Hungate 1957 as <em>Hominimerdicola alba<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>76:<\/strong> 007091. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41729196?dopt=Abstract\">41729196<\/a>.<\/p>\n<p><strong>Yamamoto, K., Watanabe, F., Murakami, R., Kubo, H., Iino, T., Ohkuma, M., Matsutani, M., Sakamoto, H., Saitoh, H., and Tanaka, N.<\/strong> 2026. <em>Qipengyuania triglochinis<\/em> sp. nov. and <em>Alteriqipengyuania triglochinis<\/em> sp. nov.: two novel <em>Erythrobacteraceae<\/em> members isolated from rhizosphere and root in <em>Triglochin maritima<\/em> L.  Int. J. Syst. Evol. Microbiol. <strong>76:<\/strong> 007113. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41925719?dopt=Abstract\">41925719<\/a>.<\/p>\n<p><strong>Maruoka, N., Kudo, R., Igai, K., Shimizu, M., Yuki, M., Ohkuma, M., and Hongoh, Y.<\/strong> 2026. Discovery and genomics of H<sub>2<\/sub>-oxidizing\/O<sub>2<\/sub>-reducing <em>Deferribacterota<\/em> ectosymbiotic with protists in the guts of termites and a <em>Cryptocercus<\/em> cockroach. ISME. Commun. <strong>6:<\/strong> ycag002. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41675302?dopt=Abstract\">41675302<\/a>.<\/p>\n<p><strong>Nishihara, A., Kato, S., and Ohkuma, M.<\/strong> 2026. Exploring the Diversity and Metabolic Potential of CO<sub>2<\/sub> fixation Mediated by RubisCO in Prokaryotes in the Japan Collection of Microorganisms. Microbes. Environ. <strong>41:<\/strong> 25035. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41565279?dopt=Abstract\">41565279<\/a>.<\/p>\n<p><strong>Fujita, N., Hashimoto, A., Ohkuma, M., Hosoya, T., and Kakishima, M. <\/strong> 2026. <em>Microbotryum crypticum<\/em>, a new anther smut fungus on <em>Silene miqueliana<\/em> from Japan. Mycoscience. <strong>67:<\/strong> 1-9. DOI: <a href=\"http:\/\/dx.doi.org\/10.47371\/mycosci.2025.10.001\">10.47371\/mycosci.2025.10.001<\/a>.<\/p>\n<p><strong>Tokumaru, A., Kouduka, M., Suga, H., Fukuda, A., Kato, S., Takahashi, Y., Suzuki, K., Usui, A., Mukai, H., Tomioka, N., Oura, M., Ito, M., and Suzuki, Y.<\/strong> 2026. Co-enrichment of Ce and organics in microbe-like structures at the deep-sea ferromanganese crust surface. Philos. Trans. A Math. Phys. Eng. Sci. <strong>384:<\/strong> 20240432. DOI: <a href=\"http:\/\/dx.doi.org\/10.1098\/rsta.2024.0432\">10.1098\/rsta.2024.0432<\/a>.<\/p>\n<p><strong>Kobayashi, Y., Ohkuma, M., Aoki, K., Tanaka, N., and Takashima, M.<\/strong> 2026. Chromosome-resolved genome assemblies of <em>Rhodotorula toruloides<\/em> reveal abnormal chromosomal evolution under artificial culture conditions. Sci. Rep. <strong>16:<\/strong> 1732. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41381795?dopt=Abstract\">41381795<\/a>.<\/p>\n<p><strong>Tsukamoto, Y., Sakai, D. H., Takano, Y., Koga, T., Nishihara, A., Kawai, S., Yoshizawa, S., and Ohkuma, M.<\/strong> 2026. <em>Caldiplasma sukawensis<\/em> gen. nov., sp. nov., and <em>Cuniculiplasma thermophilum<\/em> sp. nov., mesophilic, acidophilic, cell-wall-less, archaea of the order Thermoplasmatales, isolated from extremely acidic hot spring. Syst. Appl. Microbiol. <strong>49:<\/strong> 126686. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41506132?dopt=Abstract\">41506132<\/a>.<\/p>\n<p><strong>Sakamoto, M., Endo, A. <\/strong>2026. <em>Faecalibacterium<\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.gbm00674.pub2\">10.1002\/9781118960608.gbm00674.pub2<\/a><\/p>\n<p><a name=\"2025\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2024\">2024<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2023\">2023<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2022\">2022<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2021\">2021<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2025<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Tanimoto, K., Kato, S., Tokunaga, K., Hamamura, N., Ohkuma, M., and Mitsunobu, S. <\/strong>2025. Percent-Level Copper Mineralisation Promoted by Copper-Tolerant Iron-Oxidising Bacteria in Circumneutral Mine Drainage. Environ. Microbiol.<strong> 27:<\/strong> e70212. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41320829?dopt=Abstract\">41320829<\/a>.<\/p>\n<p><strong>Uchijima, T., Kato, S., Tanimoto,  K., Shiraishi,  F., Hamamura, N., Tokunaga, K., Makita, H., Kondo, M., Ohkuma, M., and Mitsunobu, S.<\/strong> 2025. Custom-made medium approach for effective enrichment and isolation of chemolithotrophic iron-oxidizing bacteria. FEMS. Microbiol. Ecol. <strong>101:<\/strong> fiaf051. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40328454?dopt=Abstract\">40328454<\/a>.<\/p>\n<p><strong>Kobayashi, Y., Tanaka, N., Matsutani, M., Kurokawa, Y., Aoki, K., Ohkuma, M., Manabe, R., and Takashima, M.<\/strong> 2025. Whole-genome based phylogeny and comparative genomics of Sporidiobolales and related taxa of <em>Basidiomycetes<\/em>. IMA Fungus. <strong> 16:<\/strong> e141626. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40400710?dopt=Abstract\">40400710<\/a>.<\/p>\n<p><strong>Hamaguchi, T., Ohara, M., Hisatomi, A., Sekiguchi, K., Takeda, J., Ueyama, J., Ito, M., Nishiwaki, H., Ogi, T., Hirayama, M., Ohkuma, M., Sakamoto, M., and Ohno, K.<\/strong> 2025. <em>Desulfovibrio falkowii<\/em> sp. nov., <em>Porphyromonas miyakawae<\/em> sp. nov., <em>Mediterraneibacter flintii<\/em> sp. nov. and <em>Owariibacterium komagatae<\/em> gen. nov., sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>75:<\/strong> 006636. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39804682?dopt=Abstract\">39804682<\/a>.<\/p>\n<p><strong>Abe, K., Yuki, M., Imagawa, Y., Hisatomi, A., Ohkuma, M., Sakamoto, M., and Noda, S.<\/strong> 2025. Genome-based reclassification of the genus <em>Lactococcus<\/em> and two novel species <em>Pseudolactococcus yaeyamensis<\/em> gen. nov., sp. nov. and <em>Lactovum odontotermitis<\/em> sp. nov. isolated from the gut of termites. Int. J. Syst. Evol. Microbiol. <strong>75:<\/strong> 006803. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40471659?dopt=Abstract\">40471659<\/a>.<\/p>\n<p><strong>Ang, L. X. A., Robert, V., Hisatomi, A., Hirasaki, M., Maeno, S., Ohkuma, M., Sakamoto, M., Chatel, J-M., and Endo, A.<\/strong> 2025. <em>Faecalibacterium langellae<\/em> sp. nov. isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>75:<\/strong> 006804. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40459242?dopt=Abstract\">40459242<\/a>.<\/p>\n<p><strong>Ang, A., Robert, V., Hisatomi, A., Hirasaki, M., Maeno, S., Ohkuma, M., Sakamoto, M., Chatel, J. M., and Endo, A. <\/strong>2025. Corrigendum: <em>Faecalibacterium langellae<\/em> sp. nov. isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>75:<\/strong> 006838. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40613552?dopt=Abstract\">40613552<\/a>.<\/p>\n<p><strong>Fu, J., Liu, Y., Yoshioka, T., Igai, K., Mabuchi, T., Kihara, K., Murakami, T., Lo, N., Ohkuma, M., and Hongoh, Y.<\/strong> 2025. Functional division of labor in motility, lignocellulose digestion, and nitrogen metabolism revealed for the <em>Mixotricha paradoxa<\/em> holobiont. ISME. J. <strong>19:<\/strong> wraf178. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40832871?dopt=Abstract\">40832871<\/a>.<\/p>\n<p><strong>Goto-Ito, S., Kato, S., Takahashi, M., Sakamoto, A., Yamagata, A., Lee, Y., Ehara, H., Sato, M., Toyooka, K., Ohkuma, M., and Ito, T. <\/strong>2025. Structural analysis of a symbiotic system involving a <em>Nanobdellati<\/em> archaeon by cryo-electron tomography. J. Biochem.<strong> 179:<\/strong> 21-30. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40855682?dopt=Abstract\">40855682<\/a>.<\/p>\n<p><strong>Oda, N., Kanno, N., Kato, S., Ohkuma, M., and Shigeto. S.<\/strong> 2025. Improving machine learning\u2013based bacterial discrimination by learning single-cell raman data from multiple growth phases. Journal of Raman Spectroscopy. <strong>56:<\/strong> 481-190. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/jrs.6804\">10.1002\/jrs.6804<\/a>.<\/p>\n<p><strong>Nakagawa, S., Yagi, H., Suyama, T., Shimamura, S., Yanaka, S., Yagi-Utsumi, M., Kato, S., Ohkuma, M., Kato, K., and Takai, K.<\/strong> 2025. Exploring protein <em>N<\/em>-glycosylation in ammonia-oxidizing <em>Nitrososphaerota<\/em> archaea through glycoproteomic analysis. mBio. <strong>16:<\/strong> e03859-24. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40387319?dopt=Abstract\">40387319<\/a>.<\/p>\n<p><strong>Ban, S., Endoh, R., Hayashi. M., Ito, J., Uehara, Y., Kota, A., Yamashita, K., Horiyama, M., Miwa, K., Oowada, T., Yaguchi, T., Tanaka, K. and Ohkuma, M.<\/strong> 2025. Large-Scale Expansion of the MALDI-TOF MS Library for Comprehensive Identification of Yeasts and Filamentous Fungi in Clinical and Sanitary Contexts. Med. Mycol. J. <strong>66:<\/strong> 113-123. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40887207?dopt=Abstract\">40887207<\/a>.<\/p>\n<p><strong>Koike, K., Murotomi, K., Hamajima, M., Tourlousse, D. M., Hisatomi, A., Sakamoto, M., and Sekiguchi, Y.<\/strong> 2025. Complete genome sequences of <em>Sellimonas intestinalis<\/em> JCM 30749<sup>T<\/sup>, <em>Sellimonas caecigallum<\/em> JCM 35759<sup>T<\/sup>, and <em>Sellimonas catena<\/em> JCM 35622<sup>T<\/sup> and JCM 35623. Microbiol. Resour. Announc. <strong>14:<\/strong> e01282-24. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39998194?dopt=Abstract\">39998194<\/a>.<\/p>\n<p><strong>Aoki, K., Ohkuma, M., Sugita, T., Kobayashi, Y., Tanaka, N., and Takashima, M.<\/strong> 2025. Nuclear division phenotypes in Sporidiobolales and Trichosporonales. Microbiol. Spectr. <strong>13:<\/strong> e01327-25. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41055366?dopt=Abstract\">41055366<\/a>.<\/p>\n<p><strong>Aoki, K., Ohkuma, M., Sugita, T., Kobayashi, Y., Tanaka, N., and Takashima, M. <\/strong> 2025. Analyses of hyphal diversity in Trichosporonales yeasts based on fluorescent microscopic observations. Microbiol. Spectr. <strong>13:<\/strong> e03210-24. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39998240?dopt=Abstract\">39998240<\/a>.<\/p>\n<p><strong>Hisatomi, A., Yoshida, T., Hasunuma, T, Ohkuma, M., and Sakamoto, M.<\/strong> 2025. Difficult-to-culture micro-organisms specifically isolated using the liquid-liquid co-culture method &#8211; towards the identification of bacterial species and metabolites supporting their growth. Microbiology <strong>171:<\/strong> 001581. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40627541?dopt=Abstract\">40627541<\/a>.<\/p>\n<p><strong>Okada, G., Kurokawa, E., Sugimoto, I., Nishida, M., Miyai, M., Kondo, Y., Hashimoto, A., Iida, T., Ohkuma, M., and Degawa. Y.<\/strong> 2025. A taxonomic re-evaluation of <em>Hymenostilbe mycetophila<\/em>, a hyperparasitic synnematous hyphomycete on Favolaschia <em>nipponica<\/em>, with <em>Kobayasiyomyces mycetophilus<\/em> gen. et comb. nov. (Leotiales). Mycoscience <strong>66:<\/strong> 72-87. DOI: <a href=\"http:\/\/dx.doi.org\/10.47371\/mycosci.2024.10.007\">10.47371\/mycosci.2024.10.007<\/a>.<\/p>\n<p><strong>Yamamoto, Y., Shirouzu, T., Hashimoto, A. and Ohkuma. M. <\/strong>2025. <em>Neostagonosporella sasae<\/em> (<em>Phaeosphaeriaceae<\/em>, <em>Pleosporales<\/em>), a newly described species from bamboo leaves in Japan. Mycoscience. <strong>66:<\/strong> 171-179. DOI: <a href=\"http:\/\/dx.doi.org\/10.47371\/mycosci.2025.03.001\">10.47371\/mycosci.2025.03.001<\/a>.<\/p>\n<p><strong>Okamoto, T., Sarr, S. P., Asai, H., Tsujimoto, Y, Nishigaki, T., Takai, T., Rakotonindrina, V. T., Rakotonindrina, H., Andriamananjara, A., Nishihara, A., Ohkuma, M., and Kondo, M.<\/strong> 2025. Continuous farmyard manure application increases nitrogen fixation capacity of soils and relative abundance of iron-oxidizing diazotrophs in nutrient-deficient paddy fields in Madagascar. Plant Biotechnol. <strong>42:<\/strong> 345-355. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41181078?dopt=Abstract\">41181078<\/a>.<\/p>\n<p><strong>Moriyama, T., Endo, C., Isagi, Y., Tanaka, C., Ohkuma, M., and Hashimoto, A.<\/strong> 2025. Trizodia silvestris sp. nov., a novel species of cyanolichen from Japan. Symbiosis <strong>96:<\/strong> 53-66. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s13199-025-01059-w\">10.1007\/s13199-025-01059-w<\/a>.<\/p>\n<p><strong>Sakai, H. D., Itoh, T., Kato, S., Johnson, D. M., Shepherd, C. D., Nur, N., Suwanto, A. Ghosal, D., Ohkuma, M., and Kurosawa, N.<\/strong> 2025. <em>Microcaldus<\/em>, <em>In:<\/em> Whitman, W. B., Rainey, F. A., K&auml;mpfe, P., Trujillo, M. E., DeVos, P., Hedlund, B., and Dedysh, S. (eds.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.gbm02110\">10.1002\/9781118960608.gbm02110<\/a>.<\/p>\n<p><a name=\"2024\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2023\">2023<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2022\">2022<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2021\">2021<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2024<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Hashimoto, A., Shibata, S., Hirooka, Y., and Ohkuma, M.<\/strong> 2024. Phylogenetic and morphological re-evaluation of <em>Camptophora<\/em>. Antonie van Leeuwenhoek. <strong>117:<\/strong> 109. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39083124?dopt=Abstract\">39083124<\/a>.<\/p>\n<p><strong>Kingkaew, E., Kato, S., Iino, T., Itoh, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2024. <em>Paracraurococcus lichenis<\/em> sp. nov., isolated from lichen in Thailand. Archives of Microbiology. <strong>206:<\/strong> 413. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39316218?dopt=Abstract\">39316218<\/a>.<\/p>\n<p><strong>Nakagawa, S., Imachi, H., Shimamura, S., Yanaka, S., Yagi, H., Yagi-Utsumi, M., Sakai, H., Kato, S., Ohkuma, M., Kato, K., and Takai, K.<\/strong> 2024. Characterization of protein glycosylation in an Asgard archaeon. BBA advances. <strong>6:<\/strong> 100118. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39081798?dopt=Abstract\">39081798<\/a>.<\/p>\n<p><strong>Namwong, S., Kato, S., Iino, T., Itoh, T., Ohkuma, M., Kanchanasin, P., Phongsopitanun. W., and Tanasupawat, S.<\/strong> 2024. Draft genome sequence of an ubiquinone-10 roducing <em>Methylobacterium durans<\/em> LRY1-08 isolated from lichen in Thailand. Data in Brief. <strong>54:<\/strong> 110485. DOI: <a href=\"http:\/\/dx.doi.org\/10.1016\/j.dib.2024.110485\">10.1016\/j.dib.2024.110485<\/a>.<\/p>\n<p><strong>Yurkov, A., Visagie, M. C., Crous, W. P., Hashimoto, A., Baschien, C., Begerow, D., Kemler, M., Schoutteten, N., Stadler, M., Wijayawardene, N. N., Hyde, D. K., Zhang, N., Boekhout, T., May, W. T., Thines, M., and Hawksworth, L. D.<\/strong> 2024. Cultures as types and the utility of viable specimens for fungal nomenclature. IMA Fungus. <strong>15:<\/strong> 20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39049113?dopt=Abstract\">39049113<\/a>.<\/p>\n<p><strong>Sakamoto, M., Hisatomi, A., and Ohkuma, M.<\/strong> 2024. Isolation and characterization of a novel <em>Waltera<\/em> species and reclassification of <em>Brotolimicola acetigignens<\/em> Hitch <em>et al<\/em>. 2022 as <em>Waltera acetigignens<\/em> comb. nov.  Int. J. Syst. Evol. Microbiol. <strong>74:<\/strong> 006381. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38722771?dopt=Abstract\">38722771<\/a>.<\/p>\n<p><strong>Imachi, H., Nobu, M. K., Kato, S., Takaki, Y., Miyazaki, M., Miyata, M., Ogawara, M., Saito, Y., Sakai, S., Tahara, Y. O., Takano, Y., Tasumi, E., Uematsu, K., Yoshimura, T., Itoh, T., Ohkuma, M., and Takai, K.<\/strong> 2024. <em>Promethearchaeum syntrophicum<\/em> gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage &#8216;Asgard&#8217; archaea, and proposal of the new archaeal phylum <em>Promethearchaeota<\/em> phyl. nov. and kingdom <em>Promethearchaeati<\/em> regn. nov. Int. J. Syst. Evol. Microbiol. <strong>74:<\/strong> 006435. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38967634?dopt=Abstract\">38967634<\/a>.<\/p>\n<p><strong>Kobayashi, H., Tanizawa, Y., Sakamoto, M., Ohkuma, M., and Tohno, M. <\/strong>2024. <em>Lacrimispora brassicae<\/em> sp. nov. isolated from fermented cabbage, and proposal of <em>Clostridium indicum<\/em> Gundawar <em>et al<\/em>. 2019 and <em>Clostridium methoxybenzovorans<\/em> Mechichi <em>et al<\/em>. 1999 as heterotypic synonyms of <em>Lacrimispora amygdalina<\/em> (Parshina <em>et al<\/em>. 2003) Haas and Blanchard 2020 and <em>Lacrimispora indolis<\/em> (McClung and McCoy 1957) Haas and Blanchard 2020, respectively. Int. J. Syst. Evol. Microbiol. <strong>74:<\/strong> 006456. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39016536?dopt=Abstract\">39016536<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., Iino, T., Sakamoto, M., and Ohkuma, M.<\/strong> 2024. <em>Rhodoferax lithotrophicus<\/em> sp. nov., a neutrophilic iron-oxidizing and -reducing bacterium isolated from iron-rich freshwater sediments. Int. J. Syst. Evol. Microbiol. <strong>74:<\/strong> 006439. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38922322?dopt=Abstract\">38922322<\/a>.<\/p>\n<p><strong>Kaneko, M., Omori, T., Igai, K., Mabuchi, T., Sakai-Tazawa, M., Nishihara, A., Kihara, K., Yoshimura, T., Ohkuma, M., and Hongoh, Y.<\/strong> 2024. Facultative endosymbiosis between cellulolytic protists and methanogenic archaea in the gut of the Formosan termite <em>Coptotermes formosanus<\/em>. ISME Communications. <strong>4:<\/strong> 1. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39081362?dopt=Abstract\">39081362<\/a>.<\/p>\n<p><strong>Johnson, M. F., Sakai, H. D., Paul, B., Nunoura, T., Dalvi, S., Mudaliyar, M., Shepherd, D. C., Shimizu, M., Udupa, S., Ohkuma, M., Kurosawa, N., and Ghosal, D.<\/strong> 2024. Large attachment organelle mediates interaction between <em>Nanobdellota<\/em> archaeon YN1 and its host. ISME. J. <strong>18:<\/strong> wrae154. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39113594?dopt=Abstract\">39113594<\/a>.<\/p>\n<p><strong>Nakagawa, S., Sakai, H. D., Shimamura, S., Takamatsu, Y., Kato, S., Yagi, H., Yanaka, S., Yagi-Utsumi, M., Kurosawa, N., Ohkuma, M., Kato, K., and Takai, K.<\/strong> 2024. <em>N<\/em>-linked protein glycosylation in <em>Nanobdellati<\/em> (formerly DPANN) archaea and their hosts. J. Bacteriol. <strong>206:<\/strong> e0020524. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39194224?dopt=Abstract\">39194224<\/a>.<\/p>\n<p><strong>Kato., S., Tahara, Y. O., Nishimura, Y., Uematsu, K., Arai, T., Nakane, D., Ihara, A., Nishizaka, T., Iwasaki, W., Itoh, T., Miyata, M., and Ohkuma, M.<\/strong> 2024. Cell surface architecture of the cultivated DPANN archaeon <em>Nanobdella aerobiophila<\/em>. J. Bacteriol. <strong>206:<\/strong> e0035123. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38289045?dopt=Abstract\">38289045<\/a>.<\/p>\n<p><strong>Moriyama, T., Hashimoto, A., Ohkuma, M., and Tanaka, C.<\/strong> 2024. Conidia dispersed together with photobionts in foliicolous lichen <em>Asterothyriuym<\/em> sp. from kyoto prefecture. Lichenology. <strong>33:<\/strong> 93-99.<\/p>\n<p><strong>Mizuno-Iijima, S., Kawamoto, S., Asano, M., Mashimo, T., Wakana, S., Nakamura, K., Nishijima, K., Okamoto, H., Saito, K., Yoshina, S., Miwa, Y., Nakamura, Y., Ohkuma, M., and Yoshiki, A.<\/strong> 2024. Mammalian genome research resources available from the national bioresource project in Japan. Mamm. Genome. <strong>35:<\/strong> 497-523. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39261329?dopt=Abstract\">39261329<\/a>.<\/p>\n<p><strong>Masuda, N., Kato, S., Ohkuma, M., and Endo, K. <\/strong>2024. Metagenomic insights into ecophysiology of <em>Zetaproteobacteria<\/em> and <em>Gammaproteobacteria<\/em> in shallow zones within deep-sea massive sulfide deposits. Microbes. Environ. <strong>39: <\/strong> me23104. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39343535?dopt=Abstract\">39343535<\/a>.<\/p>\n<p><strong>Fan. G., Sun, Q., Sun, Y., Liu, D., Li, S., Li, M., Chen, Q., Wang, F., Ohkuma, M., Itoh, T., Kawasaki, H., Yu, Y., Cai, M., Kim, S-G., Lee, J-S., Ma, J., and Wu, L.<\/strong> 2024. GCM and gcType in 2024: comprehensive resources for microbial strains and genomic data. Nucleic Acids Res. <strong>53:<\/strong> d763-d771. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39498510?dopt=Abstract\">39498510<\/a>.<\/p>\n<p><a name=\"2023\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2022\">2022<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2021\">2021<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"6\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2023<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Mori, H., Kato, T., Ozawa, H., Sakamoto, M., Murakami, T., Taylor, T. D., Toyoda, A., Ohkuma, M., Kurokawa, K., and Ohno, H. <\/strong> 2023. Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community. DNA Res. <strong>30:<\/strong> dsad010. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37253538?dopt=Abstract\">37253538<\/a>.<\/p>\n<p><strong>Tanno, H., Chatel, J.-M., Martin, R., Mariat, D., Sakamoto, M., Yamazaki, M., Salminen, S., Gueimonde, M., and Endo, A.<\/strong> 2023. New gene markers for classification and quantification of <em>Faecalibacterium<\/em> spp. in the human gut. FEMS. Microbiol. Ecol. <strong>99:<\/strong> fiad035. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36990641?dopt=Abstract\">36990641<\/a>.<\/p>\n<p><strong>Nakano, S., Furutani, H., Kato, S., Kouduka, M., Yamazaki, T., and Suzuki, Y. <\/strong> 2023. Bullet-shaped magnetosomes and metagenomic-based magnetosome gene profiles in a deep-sea hydrothermal vent chimney. Front. Microbiol. <strong>14:<\/strong> 1174899. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37440886?dopt=Abstract\">37440886<\/a>.<\/p>\n<p><strong>Iino, T., Oshima, K., Hattori, M., Ohkuma, M., and Amachi, S.<\/strong> 2023. Iron corrosion concomitant with nitrate reduction by <em>Iodidimonas nitroreducens<\/em> sp. nov. isolated from iodide-rich brine associated with natural gas. Front. Microbiol. <strong>14:<\/strong> 1232866. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37808292?dopt=Abstract\">37808292<\/a>.<\/p>\n<p><strong>Hisatomi, A., Ohkuma, M., and Sakamoto, M.<\/strong> 2023. <em>Sellimonas catena<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>73:<\/strong> 005853. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37185104?dopt=Abstract\">37185104<\/a>.<\/p>\n<p><strong>Tazawa, J., Kobayashi, H., Tanizawa, Y., Uchino, A., Tanaka, F., Urashima, Y., Miura, S., Sakamoto, M., Ohkuma, M., and Tohno, M.<\/strong> 2023. <em>Clostridium folliculivorans<\/em> sp. nov., isolated from soil samples of an organic paddy in Japan. Int. J. Syst. Evol. Microbiol. <strong>73:<\/strong> 005876. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37103467?dopt=Abstract\">37103467<\/a>.<\/p>\n<p><strong>Sakamoto, M., Sakurai, N., Tanno, H., Iino, T., Ohkuma, M., and Endo, A.<\/strong> 2023. <em>Faecalibacterium hominis<\/em> Liu <em>et al<\/em>. 2023 is a later heterotypic synonym of <em>Faecalibacterium duncaniae<\/em> Sakamoto <em>et al<\/em>. 2022. Int. J. Syst. Evol. Microbiol. <strong>73:<\/strong> 005995. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37566461?dopt=Abstract\">37566461<\/a>.<\/p>\n<p><strong>Hisatomi, A., Kastawa, N. E., Song, I., Ohkuma, M., Fukiya, S., and Sakamoto, M. <\/strong> 2023. <em>Claveliimonas bilis<\/em> gen. nov., sp. nov., deoxycholic acid-producing bacteria isolated from human faeces, and reclassification of <em>Sellimonas monacensis<\/em> Zenner <em>et al<\/em>. 2021 as <em>Claveliimonas monacensis<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>73:<\/strong> 006030. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37737068?dopt=Abstract\">37737068<\/a>.<\/p>\n<p><strong>Takahashi, K., Kuwahara, H., Horikawa, Y., Izawa, K., Kato, D., Inagaki, T., Yuki, M., Ohkuma, M., and Hongoh, Y.<\/strong> 2023. Emergence of putative energy parasites within Clostridia revealed by genome analysis of a novel endosymbiotic clade. ISME J. <strong>17:<\/strong> 1895-1906. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37653056?dopt=Abstract\">37653056<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Furuchi, T., Uemura, T., Niitsu, M., Sakamoto, M., Itoh, T., and Ohkuma. M.<\/strong> 2023. Cellular polyamine analyses in the emended bacterial phylum <em>Proteobacteria<\/em> (the classes <em>Acidithiobacillia<\/em>, <em>Alphaproteobacteria<\/em>, <em>Betaproteobacteria<\/em>, <em>Gammaproteobacteria<\/em>, <em>Hydrogenophilalia<\/em>, and <em>Zetaproteobacteria<\/em>) and the newly validated bacterial phyla <em>Epsilonbacteraeota<\/em>, <em>Myxococcota<\/em>, and <em>Bdellovibrionota<\/em> -Polyamine catalogues of bacterial and archaeal extremophiles- (XIII). J. Jpn. Soc. Extremophiles <strong>21:<\/strong> 33-56. <\/p>\n<p><strong>Noda, S., Kitade, O., Jasso-Selles, D. E., Taerum, S. J., Takayanagi, M., Radek, R., Lo, N., Ohkuma, M., and Gile, G.-H. <\/strong>2023. Molecular phylogeny of Spirotrichonymphea (Parabasalia) with emphasis on <em>Spironympha, Spirotrichonympha,<\/em> and three new genera <em>Pseudospironympha, Nanospironympha,<\/em> and <em>Brugerollina<\/em>. J. Eukaryot. Microbiol. <strong>70:<\/strong> e12967. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36760170?dopt=Abstract\">36760170<\/a>.<\/p>\n<p><strong>Tokuda, M., Yuki, M., Ohkuma, M., Kimbara, K., Suzuki, H., and Shintani, M.<\/strong> 2023. Transconjugant range of PromA plasmids in microbial communities is predicted by sequence similarity with the bacterial host chromosome. Microb. Genom. <strong>9:<\/strong> mgen001043. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37341708?dopt=Abstract\">37341708<\/a><\/p>\n<p><strong>Kuncharoen. N., Yuki, M., Kudo, T., Okuma, M., Booncharoen, A., Mhuantong, W., and Tanasupawat, S. <\/strong>2023. Corrigendum to &#8220;Comparative genomics and proposal of <em>Streptomyces radicis<\/em> sp. nov., an endophytic actinomycete from roots of plants in Thailand&#8221; [Microbiol. Res. 254 (2022) 126889]. Microbiol. Res. <strong>272:<\/strong> 127394. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37120394?dopt=Abstract\">37120394<\/a>.<\/p>\n<p><strong>Hisatomi, A., Tourlousse, D. M., Hamajima, M., Ohkuma, M., Sekiguchi, Y., and Sakamoto, M.<\/strong> 2023. Complete genome sequences of <em>Ruminococcus torques<\/em> strains JCM 36208 and JCM 36209, isolated from the feces of a healthy Japanese male. Microbiol. Resour. Announc. <strong>12:<\/strong> e0063223. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37800929?dopt=Abstract\">37800929<\/a><\/p>\n<p><strong>Kato, S., Itoh, T., Wu, L., Ma, J. and Ohkuma, M.<\/strong> 2023. Complete genome sequence of <em>Vulcanisaeta souniana<\/em> strain IC-059, a hyperthermophilic archaeon isolated from hot spring water in Japan. Microbiol. Resour. Announc. <strong>12:<\/strong> e0108022. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36598242?dopt=Abstract\">36598242<\/a><\/p>\n<p><strong>Aoki, K., Yamamoto, K., Ohkuma, M., Sugita, T., Tanaka, N., and Takashima, M. <\/strong>2023. Hyphal Growth in <em>Trichosporon asahii<\/em> is accelerated by the addition of magnesium. Microbiol. Spectr. <strong>11:<\/strong> e04242-22. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37102973?dopt=Abstract\">37102973<\/a>.<\/p>\n<p><strong>Kawasaki, S., Ozawa, K., Mori, T., Yamamoto, A., Ito, M., Ohkuma, M., Sakamoto, M., and Matsutani, M.<\/strong> 2023. Symbiosis of carpenter bees with uncharacterized lactic acid bacteria showing NAD auxotrophy. Microbiol. Spectr. <strong>22:<\/strong> 00782-23. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37347191?dopt=Abstract\">37347191<\/a>.<\/p>\n<p><strong>Masaki, T., Hashimoto, A., Degawa, Y., Ohkuma, M., and Okada, G.<\/strong> 2023. <em>Harmoniella junipericola (Strobiloscyphaceae, Pezizales)<\/em>, a new hyphomycete inhabiting on leaf litter of <em>Juniperus chinensis<\/em> in Japan, its molecular phylogenetic classification, and brief notes on other <em>Harmoniella<\/em> species. Mycological Progress. <strong>22:<\/strong> 36. DOI: <a href=\"http:\/\/dx.doi.org\/10.1007\/s11557-023-01884-7\">10.1007\/s11557-023-01884-7<\/a>.<\/p>\n<p><strong>Hashimoto, A., Shibata, S., and Ohkuma, M.<\/strong> 2023. Phylogenetic and morphological re\u2011evaluation of <em>Antherospora<\/em> on <em>Barnardia japonica<\/em> collected in Japan. Mycological Progress. <strong>22:<\/strong> 87. DOI: <a href=\"http:\/\/dx.doi.org\/10.1007\/s11557-023-01935-z\">10.1007\/s11557-023-01935z<\/a>.<\/p>\n<p><strong>Anda, M., Yamanouchi, S., Cosentino, S., Sakamoto, M., Ohkuma, M., Takashima, M., Toyoda, A., and Iwasaki, W.<\/strong> 2023. Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years. Nat. Commun. <strong>14:<\/strong> 7232. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37963895?dopt=Abstract\">37963895<\/a>.<\/p>\n<p><strong>Klykleung, N., Matsuo, H., Iwatsuki, M., Takahashi, Y., &#332;mura, S., Yuki, M., Kudo, T., Ohkuma, M., Luechapudiporn, R., Tanasupawat, S., and Nakashima, T.<\/strong> 2023. Genomic analysis and physicochemical screening of ikarugamycin, fumaquinone, and a new compound, pudicin from <em>Streptomyces<\/em> sp. 3MP-14. ScienceAsia <strong>49:<\/strong> 661-669. DOI: <a href=\"https:\/\/doi.org\/10.2306\/scienceasia1513-1874.2023.067\">10.2306\/scienceasia1513-1874.2023.067<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M. <\/strong>2023. <em>Nanobdella<\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.gbm01370.pub2\">10.1002\/9781118960608.gbm01370.pub2<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M. <\/strong>2023. <em>Nanobdellaceae<\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.fbm00272.pub2\">10.1002\/9781118960608.fbm00272.pub2<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M. <\/strong>2023. <em>Nanobdellales<\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/ 10.1002\/9781118960608.obm00129.pub2\">10.1002\/9781118960608.obm00129.pub2<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M. <\/strong>2023. <em>Nanobdellia<\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.cbm00093\">10.1002\/9781118960608.cbm00093<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M. <\/strong>2023. <em>Nanobdellota phyl. nov. <\/em>, <em>In:<\/em> Whitman, W., (ed), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, John Wiley &#038; Sons, Hoboken. DOI: <a href=\"http:\/\/dx.doi.org\/10.1002\/9781118960608.pbm00056\">10.1002\/9781118960608.pbm00056<\/a>.<\/p>\n<p><a name=\"2022\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2021\">2021<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"7\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2022<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Kanno, N., Kato, S., Itoh, T., Ohkuma, M., and Shigeto, S.<\/strong> 2022. Resonance Raman analysis of intracellular vitamin B12 analogs in methanogenic archaea. Analytical Science Advances. <strong>3:<\/strong> 165-173. DOI: <a href=\"https:\/\/doi.org\/10.1002\/ansa.202100042\">10.1002\/ansa.202100042<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Iino, T., and Ohkuma, M.<\/strong> 2022. Growth of succinate consumer <em>Dialister hominis<\/em> is supported by <em>Bacteroides thetaiotaomicron<\/em>. Anaerobe. <strong>77:<\/strong> 102642. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36113733?dopt=Abstract\">36113733<\/a>.<\/p>\n<p><strong>Muramatsu, S., Hirose, S., Iino, T., Ohkuma, M., Hanada, S., and Haruta, S.<\/strong> 2022. <em>Neotabrizicola shimadae<\/em>gen. nov., sp. nov., an aerobic anoxygenic phototrophic bacterium harbouring photosynthetic genes in the family <em>Rhodobacteraceae,<\/em> isolated from a terrestrial hot spring. Antonie van Leeuwenhoek. <strong>115:<\/strong> 731-740. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35380297?dopt=Abstract\">35380297<\/a>.<\/p>\n<p><strong>Yamada, M., Endoh, R., Masumoto, H., Yoshihashi, Y., Ohkuma, M., and Degawa, Y. <\/strong>2022. Taxonomic study of polymorphic basidiomycetous fungi <em>Sirobasidium<\/em> and <em>Sirotrema<\/em>: <em>Sirobasidium apiculatum<\/em> sp. nov., <em>Phaeotremella translucens<\/em> comb. nov. and rediscovery of <em>Sirobasidium japonicum<\/em> in Japan. Antonie Van Leeuwenhoek. <strong>115:<\/strong> 1421-1436. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36327002?dopt=Abstract\">36327002<\/a>.<\/p>\n<p><strong>Hayakawa, M., Tokuda, M., Kaneko, K., Nakamichi, K., Yamamoto, Y., Kamijo, T., Umeki, H., Chiba, R., Yamada, R., Mori, M., Yanagiya, K., Moriuchi, R., Yuki, M., Dohra, H., Futamata, H., Ohkuma, M., Kimbara, K., and Shintani, M.<\/strong> 2022. Hitherto-unnoticed self-transmissible plasmids widely distributed among different environments in Japan. Appl. Environ. Microbiol. <strong>88:<\/strong> e0111422. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36069618?dopt=Abstract\">36069618<\/a>.<\/p>\n<p><strong>Kato, S., Masuda, S., Shibata, A., Shirasu, K., and Ohkuma, M.<\/strong> 2022. Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics. Front. Microbiol. <strong>13:<\/strong> 1045931. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36406403?dopt=Abstract\">36406403<\/a>.<\/p>\n<p><strong>Shinkai, T., Ikeyama, N., Kumagai, M., Ohmori, H., Sakamoto, M., Ohkuma, M., and Mitsumori, M.<\/strong> 2022. <em>Prevotella lacticifex<\/em> sp. nov., isolated from the rumen of cows. Int. J. Syst. Evol. Microbiol. <strong>72:<\/strong> 005278. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35254232?dopt=Abstract\">35254232<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., Iino, T., and Ohkuma, M.<\/strong> 2022. <em>Sideroxyarcus emersonii<\/em> gen. nov. sp. nov., a neutrophilic, microaerobic iron- and thiosulfate-oxidizing bacterium isolated from iron-rich wetland sediment. Int. J. Syst. Evol. Microbiol. <strong>72:<\/strong> 005347. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35476601?dopt=Abstract\">35476601<\/a>.<\/p>\n<p><strong>Sakamoto, M., Sakurai, N., Tanno, H., Iino, T., Ohkuma, M., and Endo, A.<\/strong> 2022. Genome-based, phenotypic and chemotaxonomic classification of <em>Faecalibacterium<\/em> strains: proposal of three novel species <em>Faecalibacterium duncaniae<\/em> sp. nov., <em>Faecalibacterium hattorii<\/em> sp. nov. and <em>Faecalibacterium gallinarum<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>72:<\/strong> 005379. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35416766?dopt=Abstract\">35416766<\/a>.<\/p>\n<p><strong>Kato, S., Ogasawara, A., Itoh, T., Sakai, H., Shimizu, M., Yuki, M., Kaneko, M., Takashina, T., and Ohkuma, M.<\/strong> 2022. <em>Nanobdella aerobiophila<\/em> gen. nov., sp. nov., a thermoacidophilic, obligate ectosymbiotic archaeon, and proposal of <em>Nanobdellaceae<\/em> fam. nov., <em>Nanobdellales<\/em> ord. nov. and <em>Nanobdellia<\/em> class. nov. Int. J. Syst. Evol. Microbiol. <strong>72:<\/strong> 005489. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35993221?dopt=Abstract\">35993221<\/a>.<\/p>\n<p><strong>Tohno, M., Tanizawa, Y., Sawada, H., Sakamoto, M., Ohkuma, M., and Kobayashi, H.<\/strong> 2022. A novel species of lactic acid bacteria, <em>Ligilactobacillus pabuli<\/em> sp. nov., isolated from alfalfa silage. Int. J. Syst. Evol. Microbiol. <strong>72:<\/strong> 005587. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36269574?dopt=Abstract\">36269574<\/a>.<\/p>\n<p><strong>Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S.<\/strong> 2022. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. <strong>2588:<\/strong> 91-104. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36418684?dopt=Abstract\">36418684<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Furuchi, T., Niitsu, M., Sakamoto, M., Itoh, T., and Ohkuma, M.<\/strong> 2022. Additional cellular polyamine data in the twenty bacterial phyla, <em>Acidobacteria<\/em>, <em>Armatimonadetes<\/em>, <em>Atribacterota<\/em>, <em>Balneolaeota<\/em>, <em>Chlorobi<\/em>, <em>Chloroflexi<\/em>, <em>Chrysiogenetes<\/em>, <em>Deferribacteres<\/em>, <em>Elusimicrobia<\/em>, <em>Fusobacteria<\/em>, <em>Gemmatimonadetes<\/em>, <em>Ignavibacteriae<\/em>, <em>Kiritimatiellaeota<\/em>, <em>Lentisphaerae<\/em>, <em>Nitrospirae<\/em>, <em>Planctomycetes<\/em>, <em>Rhodothermaeota<\/em>, <em>Spirochaetes<\/em>, <em>Synergistetes<\/em>, and <em>Verrucomicrobia<\/em>. Microb. Resour. Syst. <strong>38:<\/strong> 17-30.<\/p>\n<p><strong>Kuncharoen, N., Yuki, M., Kudo, T., Okuma, M., Booncharoen, A., Mhuantong, W., and Tanasupawat, S.<\/strong> 2022. Comparative genomics and proposal of <em>Streptomyces radices<\/em> sp. nov., an endophytic actinomycete from roots of plants in Thailand. Microbiol. Res. <strong>254:<\/strong> 126889. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34689101?dopt=Abstract\">34689101<\/a>.<\/p>\n<p><strong>Kinjo, Y., Bourguignon, T., Hongoh, Y., Lo, N., Tokuda, G., and Ohkuma, M. <\/strong> 2022. Coevolution of metabolic pathways in blattodea and their <em>Blattabacterium<\/em> endosymbionts, and comparisons with other insect-bacteria symbioses. Microbiol. Spectr. <strong>10:<\/strong> 02779-22. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36094208?dopt=Abstract\">36094208<\/a>.<\/p>\n<p><strong>Igai, K., Kitade, O., Fu, J., Omata, K., Yonezawa, T., Ohkuma, M., and Hongoh, Y. <\/strong> 2022. Fine-scale genetic diversity and putative ecotypes of oxymonad protists coinhabiting the hindgut of Reticulitermes speratus. Mol. Ecol. <strong>31:<\/strong> 1317-1331. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34865251?dopt=Abstract\">34865251<\/a>.<\/p>\n<p><strong>Delgado, G., Miller, A. N., Hashimoto, A., Iida, T., Ohkuma, M., and Okada, G. <\/strong> 2022. A phylogenetic assessment of Endocalyx (cainiaceae, xylariales) with <em>E. grossus<\/em> comb. et stat. nov. Mycol. Prog. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s11557-021-01759-9\">10.1007\/s11557-021-01759-9<\/a>.<\/p>\n<p><strong>Sakai, H., Nur, N., Kato, S., Yuki, M., Shimizu, M., Itoh, T., Ohkuma, M., Suwanto, A., and Kurosawa, N.<\/strong> 2022. Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses. Proc. Natl. Acad. Sci. USA <strong>119:<\/strong> e2115449119. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35022241?dopt=Abstract\">35022241<\/a>.<\/p>\n<p><strong>Aoki, H., Yuki, M., Shimizu, M., Hongoh, Y., Ohkuma, M., and Yamagata, Y.<\/strong> 2022. Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequences. Sci. Rep. <strong>12:<\/strong> 17014-17026. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36257967?dopt=Abstract\">36257967<\/a>.<\/p>\n<p><strong>Namwonga, S., Pandeya, S., Yuki, M., Kudo, T., Ohkuma, M., and Tanasupawatc, S.<\/strong> 2022. Characterization, genome annotation, and antibacterial properties of <em>Actinopolyspora saharensis<\/em> BKK2. ScienceAsia <strong>48:<\/strong> 635-341. DOI: <a href=\u201dhttp:\/\/dx.doi.org\/10.2306\/scienceasia1513-1874.2022.087\u201d>10.2306\/scienceasia1513-1874.2022.087<\/a>.<\/p>\n<p><strong>Kanno, N., Kato, S., Ohkuma, M., Matsui, M., Iwasaki, W., and Shigeto, S.<\/strong> 2022. Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm. STAR. Protoc. <strong>3:<\/strong> 101812. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36386892?dopt=Abstract\">36386892<\/a>.<\/p>\n<p><a name=\"2021\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2020\">2020<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2021<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Iino, T., Oshima, K., Hattori, M., Ohkuma, M., and Amachi, S.<\/strong> 2021. <em>Iodidimonas gelatinilytica<\/em> sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater. Antonie van Leeuwenhoek. <strong>114:<\/strong> 625\u2013631. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33761033?dopt=Abstract\">33761033<\/a>.<\/p>\n<p><strong>Muramatsu, F., Tonomura, M., Yamada, M., Kasahara, Y., Yamamura, S., Iino, T., and Amachi, S.<\/strong> 2021. Possible involvement of a tetrathionate reductase homolog in dissimilatory arsenate reduction by <em>Anaeromyxobacter<\/em> sp. strain PSR-1. Appl. Environ. Microbiol. <strong>86:<\/strong> e00829-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32978134?dopt=Abstract\">32978134<\/a>.<\/p>\n<p><strong>Kanchanasin, P., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2021. <em>Nocardia terrae<\/em> sp. nov., an actinomycete isolated from soil in Thailand. Arch. Microbiol. <strong>203:<\/strong> 1071-1077. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33146799?dopt=Abstract\">33146799<\/a>.<\/p>\n<p><strong>Ochi, K., Tokuda, M., Yanagiya, K., Suzuki-Minakuchi, C., Nojiri, H., Yuki, M., Ohkuma, M., Kimbara, K., and Shintani, M.<\/strong> 2021. Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1. Biosci. Biotechnol. Biochem. <strong>85:<\/strong> 1005-1015. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33580688?dopt=Abstract\">33580688<\/a>.<\/p>\n<p><strong>Maejima, Y., Iino, T., Moriuchi, R., Kushimoto, K., Muraguchi, Y., Fukuda, K., Nojiri, H., Ohkuma, M., Dohra, H., Kimbara K., and Shintani, M.<\/strong> 2021. <em>Fluviispira sanaruensis<\/em> sp., nov., isolated from a brackish lake in hamamatsu, Japan. Curr. Microbiol. <strong>78:<\/strong> 3268\u20133276. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/ 34086078?dopt=Abstract\">34086078<\/a>.<\/p>\n<p><strong> Wasiatus, S., Hashimoto, A., Okada, G., and Ohkuma, M.<\/strong> 2021. Notes on some interesting sporocarp-inhabiting fungi isolated from Xylarialean fungi in Japan. Diversity. DOI: <a href=\"https:\/\/doi.org\/10.3390\/d13110574:>10.3390\/d13110574<\/a>.<\/p>\n<p><strong>Tanno, H., Fujii, T., Hirano, K., Maeno, S., Tonozuka, T., Sakamoto, M., Ohkuma, M., Tochio, T., and Endo, A.<\/strong> 2021. Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers. Gut Microbes. <strong>13:<\/strong> e1869503. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33439065?dopt=Abstract\">33439065<\/a>.<\/p>\n<p><strong>Kato, S., Ohnishi, M., Nagamori, M., Yuki, M., Takashina, T., Ohkuma, M., and Itoh, T.<\/strong> 2021. <em>Conexivisphaera calida<\/em> gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of <em>Conexivisphaeraceae<\/em> fam. nov., <em>Conexivisphaerales<\/em> ord. nov., and <em>Conexivisphaeria<\/em> class. nov. in the phylum <em>Thaumarchaeota<\/em>. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 004595. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33295866?dopt=Abstract\">33295866<\/a>.<\/p>\n<p><strong>Suzuki-Hashido, N., Tsuchida, S., Hayakawa, T., Sakamoto, M., Azumano, A.,  Seino, S., Matsuda, I., Ohkuma, M., and Ushida, K.<\/strong> 2021. <em>Lactobacillus nasalidis<\/em> sp. nov., isolated from the forestomach of a captive proboscis monkey <em>(Nasalis larvatus)<\/em> Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 004787. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33906706?dopt=Abstract\">33906706<\/a>.<\/p>\n<p><strong>Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Ohkuma, M., and Kobayashi, H.<\/strong> 2021. <em>Lactobacillus cortices<\/em> sp. nov., isolated from hardwood bark. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 004882. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34264810?dopt=Abstract\">34264810<\/a>.<\/p>\n<p><strong>Saeng-in, P., Kanchanasin, P., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2021. <em>Actinoplanes lichenicola<\/em> sp. nov. and <em>Actinoplanes ovalisporus<\/em> sp. nov., isolated from lichen in Thailand. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 004921. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34319866?dopt=Abstract\">34319866<\/a>.<\/p>\n<p><strong>Kobayashi, H., Tanizawa, Y., Sakamoto, M., Ohkuma, M., and Tohno, M.<\/strong> 2021. Taxonomic status of the species <em>Clostridium methoxybenzovorans<\/em> Mechichi <em>et al<\/em>. 1999. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 004951. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34379581?dopt=Abstract\">34379581<\/a>.<\/p>\n<p><strong>Chen, Y., Nishihara, A., Iino, T., Ohkuma, M., and Haruta, S.<\/strong> 2021. <em>Caldicellulosiruptor diazotrophicus<\/em> sp. nov., a thermophilic, nitrogen-fixing fermentative bacterium isolated from a terrestrial hot spring in Japan. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 005014. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34542397?dopt=Abstract\">34542397<\/a>.<\/p>\n<p><strong>Kobayashi, H., Tanizawa, Y., Yagura, M., Sakamoto, M., Ohkuma, M., and Tohno, M.<\/strong> 2021. <em>Clostridium zeae<\/em> sp. nov., isolated from corn silage. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 005088. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34748474?dopt=Abstract\">34748474<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Yuki, M., Murakami, T., Mori, H., Iino, T., and Ohkuma, M.<\/strong> 2021. <em>Adlercreutzia hattorii<\/em> sp. nov., an equol non-producing bacterium isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 005121. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34870581?dopt=Abstract\">34870581<\/a>.<\/p>\n<p><strong>Kanchanasin, P., Phongsopitanun, W.,  Yuki, M., Kudo, T., Ohkuma, M., Nakashima, T., and Tanasupawat, S.<\/strong> 2021. <em>Actinomadura violacea<\/em> sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand. Int. J. Syst.Evol. Microbiol. <strong>71:<\/strong> 005126. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34870574?dopt=Abstract\">34870574<\/a>.<\/p>\n<p><strong>Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Ohkuma, M., and Kobayashi, H.<\/strong> 2021. <em>Lentilactobacillus fungorum<\/em> sp. nov., isolated from spent mushroom substrates. Int. J. Syst. Evol. Microbiol. <strong>71:<\/strong> 005184. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34913426?dopt=Abstract\">34913426<\/a>.<\/p>\n<p><strong>Kanno, N., Kato, S., Ohkuma, M., Matsui, M., Iwasaki, W., and Shigeto, S. <\/strong> 2021. Machine learning-assisted single-cell Raman fingerprinting for <em>in situ<\/em> and nondestructive classification of prokaryotes. iScience. <strong>24:<\/strong> 102975.\u3000PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34485857?dopt=Abstract\">34485857<\/a>.<\/p>\n<p><strong>Songsumanus, A., Tanasupawat, S., Songsumanus, A., Kuncharoen, N., Kudo, T., Yuki, M., Ohkuma, M., and Igarashi, Y.<\/strong> 2021. <em>Actinomadura decatromicini<\/em> sp. nov., isolated from mountain soil in Thailand. J. Antibiot. <strong>74:<\/strong> 51-28. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32724099?dopt=Abstract\">32724099<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., Morohoshi, S., Kunihiro, T., Iino, T., and Ohkuma, M.<\/strong> 2021. <em>Coprobacter secundus<\/em> subsp. <em>similis<\/em> subsp. nov. and <em>Solibaculum mannosilyticum<\/em> gen. nov., sp. nov., isolated from human feces. Microbiol. Immunol. <strong>65:<\/strong> 245-256. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33913539?dopt=Abstract\">33913539<\/a>. <\/p>\n<p><strong>Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W.<\/strong> 2021. Complete genome sequence of <em>Longicatena caecimuris<\/em> strain 3BBH23, isolated from healthy japanese feces. Microbiol. Resour. Announc. <strong>10:<\/strong> e00282-21. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34016676?dopt=Abstract\">34016676<\/a>.<\/p>\n<p><strong>Omokawa, H., Kurosawa, N., Kato, S., Itoh, T., Ohkuma, M. and Sakai, H. <\/strong> 2021. Complete genome sequence of a novel <em>Sulfolobales<\/em> archaeon strain, HS-7, isolated from the unzen hot spring in Japan. Microbiol. Resour. Announc. <strong>10:<\/strong> e00582-21. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34553995?dopt=Abstract\">34553995<\/a>.<\/p>\n<p><strong>Ogata, Y., Sakamoto, M., Kumar, N., Ohkuma, M., Hattori, M., and Suda, W.<\/strong> 2021. Complete genome sequence of <em>Megamonas funiformis<\/em> strain 1CBH44, isolated from human feces. Microbiol. Resour. Announc. <strong>10:<\/strong> e00785-21. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34854722?dopt=Abstract\">34854722<\/a>.<\/p>\n<p><strong>Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W.<\/strong> 2021. Complete genome sequence of <em>Alistipes indistinctus<\/em> strain 2BBH45, isolated from the feces of a healthy japanese male. Microbiol. Resour. Announc. <strong>10:<\/strong> e01284-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33446594?dopt=Abstract\">33446594<\/a>.<\/p>\n<p><strong>Tourlousse, D. M., Narita, K., Miura, T., Sakamoto, M., Ohashi, A., Shiina, K., Matsuda, M., Miura, D., Shimamura, M., Ohyama, Y., Yamazoe, A., Uchino, Y., Kameyama, K., Arioka, S., Kataoka, J., Hisada, T., Fujii, K., Takahashi, S., Kuroiwa, M., Rokushima, M., Nishiyama, M., Tanaka, Y., Fuchikami, T., Aoki, H., Kira, S., Koyanagi, R., Naito, T., Nishiwaki, M., Kumagai, H., Konda, M., Kasahara, K., Ohkuma, M., Kawasaki, H., Sekiguchi, Y., and Terauchi, J.<\/strong> 2021. Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements. Microbiome. <strong>9:<\/strong> 95. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33910647?dopt=Abstract\">33910647<\/a>.<\/p>\n<p><strong>Endoh, R., Horiyama, M., and Ohkuma, M.<\/strong> 2021. D-Fructose assimilation and fermentation by yeasts belonging to saccharomycetes: rediscovery of universal phenotypes and elucidation of fructophilic behaviors in <em>Ambrosiozyma platypodis<\/em> and <em>Cyberlindnera americana<\/em>. Microorganisms. <strong>9:<\/strong> 758. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33916327?dopt=Abstract\">33916327<\/a>.<\/p>\n<p><strong>Ikeyama, N., Sakamoto, M., Ohkuma, M., Hiramoto, S., Wang, J., Tone, S., and Shiiba, K.<\/strong> 2021. Fecal microbiota perspective for evaluation of prebiotic potential of bamboo hemicellulose hydrolysate in mice: A preliminary study. Microorganisms. <strong>9:<\/strong> 888. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33919296?dopt=Abstract\">33919296<\/a>.<\/p>\n<p><strong>Iino, T., Shono, N., Ito, K., Nakamura, R., Sueoka, K., Harayama, S., and Ohkuma, M.<\/strong> 2021. Nitrite as a causal factor for nitrate\u2010dependent anaerobic corrosion of metallic iron induced by <em>Prolixibacter<\/em> strains. Microbiologyopen. <strong>10:<\/strong> e1225. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34459557?dopt=Abstract\">34459557<\/a>.<\/p>\n<p><strong>Kato, S. and Ohkuma, M.<\/strong> 2021. A single bacterium capable of oxidation and reduction of iron at circumneutral pH. Microbiol. Spectr. <strong>9:<\/strong> 00161-21.\u3000PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34431720?dopt=Abstract\">34431720<\/a>.<\/p>\n<p><strong>Shi, W., Sun, Q., Fan, G., Sugawara, H., Ohkuma, M., Itoh, T., Zhou, Y., Cai, M., Kim, S.-G., Lee, J.-S., Sedlacek, I., Arahal, D. R., Lucena, T., Kawasaki, H., Evtushenko, L., Weir, B. S., Alexander, S., D&#233;nes, D., Tanasupawat, S., Eurwilaichitr, L., Ingsriswang, S., Gomez-Gil, B., Hazb&#0243;n, M. H., Riojas, M. A., Suwannachart, C., Yao, S., Vandamme, P., Peng, F., Chen, Z., Liu, D., Sun, X., Zhang, X., Zhou, Y., Meng, Z., Wu, L., and Ma, J.<\/strong> 2021. gcType: a high-quality type strain genome database for microbial phylogenetic and functional research. Nucleic. Acids. Res. <strong>49:<\/strong> D694-D705. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33119759?dopt=Abstract\">33119759<\/a>.<\/p>\n<p><strong>Gile, G, H., Taerum, S, J., Jasso-Selles, D, E., Sillam-Duss&#232;s, D., Ohkuma, M., Kitade, O., and Noda, S.<\/strong> Molecular phylogenetic position of <em>Microjoenia<\/em> (Parabasalia: Spirotrichonymphea) from <em>Reticulitermes<\/em> and <em>Hodotermopsis<\/em> termite hosts.<\/strong> 2021. Protist. <strong>172:<\/strong> 125836. DOI: <a href=\"https:\/\/doi.org\/10.1016\/j.protis.2021.125836\">10.1016\/j.protis.2021.125836<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2020\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2019\">2019<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2020<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Takaki, K., Tahara, YO,. Nakamichi, N., Hasegawa, Y., Shintani, M., Ohkuma, M.,  Miyata, M., Futamata, H., and Tashiro, Y.<\/strong> 2020. Multilamellar and multivesicular outer membrane vesicles produced by a <em>Buttiauxella agrestis tolB<\/em> mutant. Appl. Environ. Microbiol. <strong>86:<\/strong> :e01131-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32801184?dopt=Abstract\">32801184<\/a>.<\/p>\n<p><strong>Klykleung, N., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., Pittayakhajonwut, P., and Tanasupawat, S.<\/strong> 2020. <em>Nonomuraea phyllanthi<\/em> sp. nov., an endophytic actinomycete isolated from the leaf of <em>Phyllanthus amarus<\/em>. Arch. Microbiol. <strong>202:<\/strong> 55-61. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31463600?dopt=Abstract\">31463600<\/a>.<\/p>\n<p><strong>Bourguignon, T., Kinjo, Y., Villa-Mart&iacute;n, P,. Coleman, N. V., Tang, Q., Arab, D. A., Wang, Z., Tokuda, G., Hongoh, Y., Ohkuma, M., Ho, S. Y. W., Pigolotti, S., and Lo, N.<\/strong> 2020. Increased mutation rate is linked to genome  reduction in prokaryotes. Curr. Biol. <strong>30:<\/strong> 3848-3855. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32763167?dopt=Abstract\">32763167<\/a>.<\/p>\n<p><strong>Maejima, Y., Iino, T., Muraguchi, Y., Fukuda, K., Ohkuma, M., Suzuki, T., Moriuchi, R., Dohra, H., Kimbara, K., and Shintani, M.<\/strong> 2020. <em>Chryseotalea sanaruensis<\/em> gen. nov., sp., nov., a member of the family <em>Cytophagaceae<\/em>, isolated from a brackish lake in Hamamatsu Japan. Curr. Microbiol. <strong>77:<\/strong> 306-312. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31792570?dopt=Abstract\">31792570<\/a>.<\/p>\n<p><strong>Namwong, S., Yuki, M., Kudo, T., Ohkuma, M., and Itoh, T.<\/strong> 2020. Genome sequencing identified a novel lasso peptide. Eurasia. J. Biosci. <strong>14:<\/strong> 7933-7941.<\/p>\n<p><strong>Sato, T., Takada, D., Itoh, T., Ohkuma, M., and Atomi, H.<\/strong> 2020. Integration of large heterologous DNA fragments into the genome of <em>Thermococcus kodakarensis<\/em>. Extremophiles <strong>24:<\/strong> 339-353. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32112303?dopt=Abstract\">32112303<\/a>.<\/p>\n<p><strong>Nishimura, Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K., Hashimoto, T., Inagaki, Y., and Ohkuma, M.<\/strong> 2020. Mitochondrial genomes of  <em>Hemiarma marina<\/em> and <em>Leucocryptos marina<\/em> revised the evolution of cytochrome c maturation in cryptista. Front. Ecol. Evol. <strong>8:<\/strong> 140. DOI: <a href=\"http:\/\/doi.org\/10.3389\/fevo.2020.00140\">10.3389\/fevo.2020.00140<\/a>.<\/p>\n<p><strong>Kanchanasin, P., Yuki, M., Kudo, T., Ohkuma, M., Kuncharoen, N., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2020. <em>Streptomyces bauhiniae<\/em> sp. nov., isolated from tree bark of <em>Bauhinia variegata<\/em> Linn. in Thailand. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 228-233. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31592758?dopt=Abstract\">31592758<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Ogata, Y., Suda, W., Iino, T., Hattori, M., and Ohkuma, M.<\/strong> 2020. <em>Alistipes communis<\/em> sp. nov., <em>Alistipes dispar<\/em> sp. nov. and <em>Alistipes onderdonkii<\/em> subsp. <em>vulgaris<\/em> subsp. nov., isolated from human faeces, and creation of <em>Alistipes onderdonkii<\/em> subsp. <em>onderdonkii<\/em> subsp. nov. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 473-480. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31633480?dopt=Abstract\">31633480<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., Iino, T., and Ohkuma, M.<\/strong> 2020. <em>Dialister hominis<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 589-595. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31661048?dopt=Abstract\">31661048<\/a>.<\/p>\n<p><strong>Klykleung, N., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., Pittayakhajonwut, P., and Tanasupawat, S.<\/strong> 2020. <em>Microbispora catharanthi<\/em> sp. nov., a novel endophytic actinomycete isolated from the root of <em>Catharanthus roseus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 964-970. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31730033?dopt=Abstract\">31730033<\/a>.<\/p>\n<p><strong>Iino, T., Kawai, S., Yuki, M., Dekio, I., Ohkuma, M., and Haruta S.<\/strong> 2020. <em>Thermaurantimonas aggregans<\/em> gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 1117-1121. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31778354?dopt=Abstract\">31778354<\/a>.<\/p>\n<p><strong>Itoh, T., Miura, T., Sakai, H. D., Kato, S., Ohkuma, M., and Takashina, T. <\/strong> 2020. <em>Sulfuracidifex tepidarius<\/em> gen. nov., sp. nov. and transfer of <em>Sulfolobus metallicus<\/em> Huber and Stetter 1992 to the genus <em>Sulfuracidifex<\/em> as <em>Sulfuracidifex metallicus<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 1837-1842. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31958046?dopt=Abstract\">31958046<\/a>.<\/p>\n<p><strong>Dekio, I., Sakamoto, M., Suzuki, T., Yuki, M., Kinoshita, S., Murakami, Y., and Ohkuma, M.<\/strong> 2020. <em>Cutibacterium modestum<\/em> sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of <em>Cutibacterium granulosum<\/em> and <em>Cutibacterium namnetense<\/em>. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 2457-2462. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32559834?dopt=Abstract\">32559834<\/a>.<\/p>\n<p><strong>Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Tohno, M.<\/strong> 2020. Reclassification of <em>Clostridium diolis<\/em> Biebl and Spr&ouml;er 2003 as a later heterotypic synonym of <em>Clostridium beijerinckii<\/em> Donker 1926 (Approved Lists 1980) emend. Keis <em>et al.<\/em> 2001. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 2463-2466. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32068529?dopt=Abstract\">32068529<\/a>.<\/p>\n<p><strong>Tanizawa, Y., Kobayashi, H., Nomura, M., Sakamoto, M., Arita, M., Nakamura, Y., Ohkuma, M., and Tohno, M.<\/strong> 2020. <em>Lactobacillus buchneri<\/em> subsp. <em>silagei<\/em> subsp. nov., isolated from rice grain silage. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 3111-3116. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32250236?dopt=Abstract\">32250236<\/a>.<\/p>\n<p><strong>Klykleung, N., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., Inahashi, Y., Matsumoto, A., and Tanasupawat, S.<\/strong> 2020. <em>Streptomyces mimosae<\/em> sp. nov., an endophytic actinomycete isolated from the root of <em>Mimosa pudica<\/em> in Thailand. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 3316-3322. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32375984?dopt=Abstract\">32375984<\/a>.<\/p>\n<p><strong>Sorokin, D. Y., Merkel, A. Y., Messina, E., Yakimov, M. M., Itoh, T., Mesbah, N. M., Wiegel, J., and Oren, A.<\/strong> 2020. Reclassification of the genus <em>Natronolimnobius<\/em>: proposal of two new genera, <em>Natronolimnohabitans<\/em> gen. nov. to accommodate <em>Natronolimnobius innermongolicus<\/em> and <em>Natrarchaeobaculum<\/em> gen. nov. to accommodate <em>Natronolimnobius aegyptiacus<\/em> and <em>Natronolimnobius sulfurireducens<\/em>. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 3399-3405. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32374250?dopt=Abstract\">32374250<\/a>.<\/p>\n<p><strong>Ikeyama, N., Toyoda, A., Morohoshi, S., Kunihiro, T., Murakami, T., Mori, H., Iino, T., Ohkuma, M., and Sakamoto M.<\/strong> 2020. <em>Amedibacterium intestinale<\/em> gen. nov., sp. nov., isolated from human faeces, and reclassification of <em>Eubacterium dolichum<\/em> Moore <em>et al.<\/em> 1976 (Approved Lists 1980) as <em>Amedibacillus dolichus<\/em> gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 3656-3664. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32416738?dopt=Abstract\">32416738<\/a>.<\/p>\n<p><strong>Noda, S., Koyama, F., Aihara, C., Ikeyama, N., Yuki, M., Ohkuma M, and Sakamoto, M.<\/strong> 2020. <em>Lactococcus insecticola<\/em> sp. nov. and <em>Lactococcus hodotermopsidis<\/em> sp. nov., isolated from the gut of the wood-feeding lower termite <em>Hodotermopsis sjostedti<\/em>. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 4515-4522. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32614762?dopt=Abstract\">32614762<\/a>.<\/p>\n<p><strong>Liou, J.-S., Huang, C.-H., Ikeyama, N., Lee, A.-Y., Chen, I-C., Blom, J., Chen, C.-C., Chen, C.-H., Lin, Y.-C., Hsieh, S.-Y., Huang, L., Ohkuma, M., Watanabe, K., and Sakamoto, M.<\/strong> 2020. <em>Prevotella hominis<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 4767-4773. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32697186?dopt=Abstract\">32697186<\/a>.<\/p>\n<p><strong>Kanchanasin, P., Yuki, M., Kudo, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2020. <em>Nocardia aurantiaca<\/em> sp. nov., isolated from soil in Thailand. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 5432-5438. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32897850?dopt=Abstract\">32897850<\/a>.<\/p>\n<p><strong>Enomoto, S., Shimane, Y., Ihara, K., Kamekura, M., Itoh, T., Ohkuma, M., Takahashi-Ando, N., Fukushima, Y., Yoshida, Y., Usami, R., Takai, K., and Minegishi, H. <\/strong> 2020. <em>Haloarcula mannanilytica<\/em> sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>70:<\/strong> 6331-6337. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33095133?dopt=Abstract\">33095133<\/a>.<\/p>\n<p><strong>Takeuchi, M., Kuwahara, H., Murakami, T., Takahashi, K., Kajitani, R., Toyoda, A.,  Itoh, T., Ohkuma, M., and Hongoh, Y.<\/strong> 2020. Parallel reductive genome evolution in <em>Desulfovibrio<\/em> ectosymbionts independently acquired by <em>Trichonympha<\/em> protists in the termite gut. ISME J. <strong>14:<\/strong> 2288-2301. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32483307?dopt=Abstract\">32483307<\/a>.<\/p>\n<p><strong>Nishimura, Y., Otagiri, M., Yuki, M., Shimizu, M., Inoue, J., Moriya, S., and  Ohkuma, M.<\/strong> 2020. Division of functional roles for termite gut protists revealed by single-cell transcriptomes. ISME J. <strong>14:<\/strong> 2449-2460. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32514117?dopt=Abstract\">32514117<\/a>.<\/p>\n<p><strong>Takashima, M., Manabe, R., and Ohkuma, M.<\/strong> 2020. Draft genome sequence of oleaginous yeast <em>Saitozyma<\/em> sp. strain JCM 24511, isolated from soil on iriomote island, okinawa, japan. Microbiol. Resour. Announc. <strong>9:<\/strong> e00196-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33239459?dopt=Abstract\">33239459<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., and Ohkuma, M. <\/strong> 2020. Complete genome sequence of <em>Faecalibacillus intestinalis<\/em> JCM 34082, isolated from feces from a healthy japanese female. Microbiol. Resour. Announc. <strong>9:<\/strong> e01160-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33303667?dopt=Abstract\"> 33303667<\/a>.<\/p>\n<p><strong>Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W.<\/strong> 2020. Complete genome sequence of <em>Adlercreutzia<\/em> sp. Strain 8CFCBH1, a potent producer of equol, isolated from healthy japanese feces. Microbiol. Resour. Announc. <strong>9:<\/strong> e01240-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33273007?dopt=Abstract\"> 33273007<\/a>.<\/p>\n<p><strong>Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W.<\/strong> 2020. Complete genome sequence of <em>Akkermansia muciniphila<\/em> JCM 30893, isolated from feces of a healthy Japanese male. Microbiol. Resour. Announc. <strong>9:<\/strong> e01543-19. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32054713?dopt=Abstract\">32054713<\/a>.<\/p>\n<p><strong>Tourlousse, D. M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. <\/strong> 2020. Complete genome sequence of <em>Collinsella aerofaciens<\/em> JCM 10188<sup>T<\/sup>. Microbiol. Resour. Announc. <strong>9:<\/strong> e00134-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32299873?dopt=Abstract\">32299873<\/a>.<\/p>\n<p><strong>Tourlousse, D. M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. <\/strong> 2020. Complete genome sequence of <em>Flavonifractor plautii<\/em>JCM 32125<sup>T<\/sup>. Microbiol. Resour. Announc. <strong>9:<\/strong> e00135-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32327522?dopt=Abstract\">32327522<\/a>.<\/p>\n<p><strong>Tourlousse, D. M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. <\/strong> 2020. Complete genome sequence of <em>Blautia producta<\/em> JCM 1471<sup>T<\/sup>. Microbiol. Resour. Announc. <strong>9:<\/strong> e00141-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32327523?dopt=Abstract\">32327523<\/a>.<\/p>\n<p><strong>Tourlousse, D. M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. <\/strong> 2020. Complete genome sequence of <em>Megamonas funiformis<\/em> JCM 14723<sup>T<\/sup>. Microbiol. Resour. Announc. <strong>9:<\/strong> e00142-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32299874?dopt=Abstract\">32299874<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Ohkuma, M.<\/strong> 2020. Complete genome sequence of <em>Athalassotoga saccharophila<\/em> strain NAS-01, a deep-branching thermophilic lineage in the phylum <em>Thermotogae<\/em>. Microbiol. Resour. Announc. <strong>9:<\/strong> 00322-20. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32299888?dopt=Abstract\">32299888<\/a>.<\/p>\n<p><strong>Ikeyama, N., Murakami, T., Toyoda, A., Mori, H., Iino, T., Ohkuma, M., and Sakamoto, M.<\/strong> 2020. Microbial interaction between the succinate\u2010utilizing bacterium <em>Phascolarctobacterium faecium<\/em> and the gut commensal <em>Bacteroides thetaiotaomicron<\/em>. MicrobiologyOpen. <strong>9:<\/strong> e1111. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32856395?dopt=Abstract\">32856395<\/a>.<\/p>\n<p><strong>Ikeyama, N., Ohkuma, M., and Sakamoto, M.<\/strong> 2020. Stress response of <em>Mesosutterella multiformis<\/em> mediated by nitrate reduction. Microorganisms. <strong>8:<\/strong> 2003. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33333944?dopt=Abstract\">33333944<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2019\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2018\">2018<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"6\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2019<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Kuncharoen, N., Kudo, T., Ohkuma, M., and Tanasupawat, S.<\/strong> 2019. <em>Micromonospora azadirachtae<\/em> sp. nov., isolated from roots of <em>Azadirachta indica<\/em> A. Juss. var. <em>siamensis<\/em> Valeton. Antonie van Leeuwenhoek <strong>112:<\/strong> 253-262. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30167912?dopt=Abstract\">30167912<\/a>.<\/p>\n<p><strong> Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, K. G., Prasetya, B., Sakamoto, M., and Ohkuma, M.<\/strong> 2019. Bacteria and methanogen community in the rumen fed different levels of grass-legume silages. Biodiversitas <strong>20:<\/strong> 1055-1062. DOI: <a href=\"https:\/\/doi.org\/10.13057\/biodiv\/d200417\"> 10.13057\/biodiv\/d200417<\/a>.<\/p>\n<p><strong>Sriswasdi, S., Takashima, M., Manabe, R., Ohkuma, M., and Iwasaki, W. <\/strong> 2019. Genome and transcriptome evolve separately in recently hybridized <em>Trichosporon<\/em> fungi. Commun. Biol. <strong>2<\/strong> 263. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31341962?dopt=Abstract\">31341962<\/a>.<\/p>\n<p><strong>Murakami, T., Onouchi, S., Igai, K., Ohkuma, M., and Hongoh, Y.<\/strong> 2019. Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach <em>Panesthia angustipennis<\/em>. FEMS. Microbiol. Ecol. <strong>95:<\/strong> fiy238. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30561598?dopt=Abstract\">30561598<\/a>.<\/p>\n<p><strong>Naradasu, D., Miran, W., Sakamoto, M., and Okamoto, A.<\/strong> 2019. Isolation and characterization of human gut bacteria capable of extracellular electron transport by electrochemical techniques. Front. Microbiol. <strong>9:<\/strong> 3267. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30697198?dopt=Abstract\">30697198<\/a>.<\/p>\n<p><strong>Takashima, M., Manabe, R., Nishimura, Y., Endoh, R., Ohkuma, M., Sriswasdi, S., Sugita, T., and Iwasaki, W.<\/strong> 2019. Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales. Fungal Genet. Biol. <strong>130:<\/strong> 31-42. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31026590?dopt=Abstract\">31026590<\/a>.<\/p>\n<p><strong>Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Tohno, M.<\/strong> 2019. Reclassification of <em>Paenibacillus thermophilus<\/em> Zhou <em>et al.<\/em> 2013 as a later heterotypic synonym of <em>Paenibacillus macerans<\/em> (Schardinger 1905) Ash <em>et al.<\/em> 1994. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 417-421. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30540240?dopt=Abstract\">30540240<\/a>.<\/p>\n<p><strong>Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Kobayashi, H.<\/strong> 2019. <em>Lactobacillus salitolerans<\/em> sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 964-969. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30628884?dopt=Abstract\">30628884<\/a>.<\/p>\n<p><strong>Dekio, I., McDowell, A., Sakamoto, M., Tomida, S., and Ohkuma, M.<\/strong> 2019. Proposal of new combination, <em>Cutibacterium acnes<\/em> subsp. <em>elongatum<\/em> comb. nov., and emended descriptions of the genus <em>Cutibacterium<\/em>, <em>Cutibacterium acnes<\/em> subsp. <em>acnes<\/em> and <em>Cutibacterium acnes<\/em> subsp. <em>defendens<\/em>. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 1087-1092. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30762517?dopt=Abstract\">30762517<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Murakami, T., Mori, H., Yuki, M., and Ohkuma, M.<\/strong> 2019. Comparative genomics of <em>Parolsenella catena<\/em> and <em>Libanicoccus massiliensis<\/em>: reclassification of <em>Libanicoccus massiliensis<\/em> as <em>Parolsenella massiliensis<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 1123-1129. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30762516?dopt=Abstract\">30762516<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., and Kudo, T.<\/strong> 2019. <em>Micromonospora caldifontis<\/em> sp. nov., isolated from hot spring soil. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 1336-1342. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30810517?dopt=Abstract\">30810517<\/a>.<\/p>\n<p><strong>Maejima, Y., Iino, T., Muraguchi, Y., Ohkuma, M., Kimbara, K., and Shintani, M.<\/strong> 2019. <em>Algoriphagus sanaruensis<\/em> sp. nov., a member of the family <em>Cyclobacteriaceae<\/em>, isolated from a brackish lake in Hamamatsu, Japan. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 2108-2113. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31663498?dopt=Abstract\">31663498<\/a>.<\/p>\n<p><strong>Kunthiphun, S., Wattanagonniyom, T., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., and Savarajara, A.<\/strong> 2019. <em>Heterocephalacria mucosa<\/em> sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 2823-2827. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31259676?dopt=Abstract\">31259676<\/a>.<\/p>\n<p><strong>Kuncharoen, N., Kudo, T., Yuki, M., Okuma, M., Pittayakhajonwut, P., and Tanasupawat, S.<\/strong> 2019. <em>Micromonospora radicis<\/em> sp. nov., isolated from roots of <em>Azadirachta indica<\/em> var. <em>siamensis<\/em> Valenton, and reclassification of <em>Jishengella zingiberis<\/em> as <em>Micromonospora zingiberis<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>69:<\/strong> 2884-2891. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31310194?dopt=Abstract\">31310194<\/a>.<\/p>\n<p><strong>Utami, Y. D., Kuwahara, H., Igai, K., Murakami, T., Sugaya, K., Morikawa, T., Nagura, Y., Yuki, M., Deevong, P., Inoue, T., Kihara, K., Lo, N., Yamada, A., Ohkuma, M., and Hongoh, Y.<\/strong> 2019. Genome analyses of uncultured TG2\/ZB3 bacteria in &#8216;Margulisbacteria&#8217; specifically attached to ectosymbiotic spirochetes of protists in the termite gut. ISME J. <strong>13:<\/strong> 455-467. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30287885?dopt=Abstract\">30287885<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., Yuki, M., Nagamori, M., Ohnishi, M., Uematsu, K., Suzuki, K., Takashina, T., and Ohkuma, M.<\/strong> 2019. Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring. ISME J. <strong>13:<\/strong> 2465-2474. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31171857?dopt=Abstract\">31171857<\/a>.<\/p>\n<p><strong>Shintani, M., Ohkuma, M., and Kimbara, K.<\/strong> 2019. High-resolution comparison of bacterial conjugation frequencies. J. Vis. Exp. <strong>143:<\/strong> e57812. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30688297?dopt=Abstract\">30688297<\/a>.<\/p>\n<p><strong>Takashima, M., and Sugita, T.<\/strong> 2019. Draft genome analysis of trichosporonales species that contribute to the taxonomy of the genus <em>Trichosporon <\/em>and related taxa. Med. Mycol. J. <strong>60:<\/strong> 51-57 PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31155572?dopt=Abstract\">31155572<\/a>.<\/p>\n<p><strong>Kunthiphun, S., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., and Savarajara, A.<\/strong> 2019. <em>Prototheca paracutis<\/em> sp. nov., a novel oleaginous achlorophyllous microalga isolated from a mangrove forest. Mycoscience <strong>60:<\/strong> 165-169 DOI: <a href=\"https:\/\/doi.org\/10.1016\/j.myc.2019.02.003\"> 10.1016\/j.myc.2019.02.003<\/a>.<\/p>\n<p><strong>Kato, S., Nakano, S., Kouduka, M., Hirai, M., Suzuki, K., Itoh, T., Ohkuma, M., and Suzuki, Y.<\/strong> 2019. Metabolic potential of as-yet-uncultured archaeal lineages of <em>Candidatus<\/em> hydrothermarchaeota thriving in deep-sea metal sulfide deposits. Microbes. Environ. <strong>34:<\/strong> 293-303. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31378759?dopt=Abstract\">31378759<\/a>.<\/p>\n<p><strong>Ikeyama, N., Ohkuma, M., and Sakamoto, M.<\/strong> 2019. Draft genome sequence of <em>Mesosutterella multiformis<\/em> JCM 32464<sup>T<\/sup>, a member of the family <em>Sutterellaceae<\/em>, isolated from human feces. Microbiol. Resour. Announc. <strong>8:<\/strong> e00478-19. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31196925?dopt=Abstract\">31196925<\/a>.<\/p>\n<p><strong>Ogata, Y., Suda, W., Ikeyama, N., Hattori, M., Ohkuma, M., and Sakamoto, M. <\/strong> 2019. Complete genome sequence of <em>Phascolarctobacterium faecium<\/em> JCM 30894, a succinate-utilizing bacterium isolated from human feces. Microbiol. Resour. Announc. <strong>8:<\/strong> e01487-18. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30687834?dopt=Abstract\">30687834<\/a>.<\/p>\n<p><strong>Takashima, M., Manabe, R., and Ohkuma, M.<\/strong> 2019. Draft genome sequences of basidiomycetous epiphytic phylloplane yeast type strains <em>Dioszegia crocea<\/em> JCM 2961 and <em>Dioszegia aurantiaca<\/em> JCM 2956. Microbiol. Resour. Announc. <strong>8:<\/strong> e01727-18. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31248996?dopt=Abstract\">31248996<\/a>.<\/p>\n<p><strong>Kato, S., Hirai, M., Ohkuma, M., and Suzuki, K.<\/strong> 2019. Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo seamount as revealed by metagenomics. PLOS ONE <strong>14:<\/strong> e0224888. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31703093?dopt=Abstract\">31703093<\/a>.<\/p>\n<p><strong>Nishimura, Y., Shiratori, T., Ishida, K., Hashimoto, T., Ohkuma, M., and Inagaki, Y.<\/strong> 2019. Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid <em>Marophrys<\/em> sp. SRT127. Sci. Rep. <strong>9:<\/strong> 4850. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30890720?dopt=Abstract\">30890720<\/a>.<\/p>\n<p><strong>Kuncharoen, N., Kudo, T., Yuki, M., Okuma, M., Booncharoen, A., and Tanasupawat, S.<\/strong> 2019. <em>Micromonospora musae<\/em> sp. nov., an endophytic actinomycete isolated from roots of <em>Musa<\/em> species. Syst. Appl. Microbiol. <strong>42:<\/strong> 126020. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31601450?dopt=Abstract\">31601450<\/a>.<\/p>\n<p><strong>Takashima, M., Suh, S,-O., Bai, F,-Y., and Sugita, T.<\/strong> 2019. Takashi Nakase&#8217;s last tweet: what is the current direction of microbial taxonomy research? FEMS. Yeast. Res. <strong>19<\/strong> foz066. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31816016?dopt=Abstract\">31816016<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2018\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2017\">2017<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"7\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2018<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Shen, X.-X., Opulente, D. A., Kominek, J., Zhou, X., Steenwyk, J. L., Buh, K. V., Haase, M. A. B., Wisecaver, J. H., Wang, M., Doering, D. T., Boudouris, J. T., Schneider, R. M., Langdon, Q. K., Ohkuma, M., Endoh, R., Takashima, M., Manabe, R.-I., &#268;ade&#382;, N., Libkind, D., Rosa, C. A., DeVirgilio, J., Hulfachor, A. B., Groenewald, M., Kurtzman, C. P., Hittinger, C. T., and Rokas, A.<\/strong> 2018. Tempo and mode of genome evolution in the budding yeast subphylum. Cell <strong>175:<\/strong> 1533-1545. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30415838?dopt=Abstract\">30415838<\/a>.<\/p>\n<p><strong>Yanagiya, K., Maejima, Y., Nakata, H., Tokuda, M., Moriuchi, R., Dohra, H., Inoue, K., Ohkuma, M., Kimbara, K., and Shintani, M.<\/strong> 2018. Novel self-transmissible and broad-host-range plasmids exogenously captured from anaerobic granules or cow manure. Front. Microbiol. <strong>9:<\/strong> 2602. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30459733?dopt=Abstract\">30459733<\/a>.<\/p>\n<p><strong> Noda, S., Aihara, C., Yuki, M., and Ohkuma, M. <\/strong> 2018. Draft genome sequence of <em>Lactococcus<\/em> sp. strain NtB2 (JCM 32569), isolated from the gut of the higher termite <em>Nasutitermes takasagoensis<\/em>. Genome Announc. <strong>6:<\/strong> e00445-18. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29903810?dopt=Abstract\">29903810<\/a>.<\/p>\n<p><strong> Sakamoto, M., Ikeyama, N., Yuki, M., and Ohkuma, M.<\/strong> 2018. Draft genome sequence of <em>Lawsonibacter asaccharolyticus<\/em> JCM 32166<sup>T<\/sup>, a butyrate-producing bacterium, isolated from human feces. Genome Announc. <strong>6:<\/strong> e00563-18. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29930067?dopt=Abstract\">29930067<\/a>.<\/p>\n<p><strong>Kinjo, Y,. Bourguignon, T., Tong, K. J., Kuwahara, H., Lim, S. J., Yoon, K. B., Shigenobu, S., Park, Y, C., Nalepa, C, A., Hongoh, Y., Ohkuma, M., Lo, N., and Tokuda, G. <\/strong> 2018. Parallel and gradual genome erosion in the <em>Blattabacterium<\/em> endosymbionts of <em>Mastotermes darwiniensis<\/em> and <em>Cryptocercus<\/em> wood roaches. Genome Biol. Evol. <strong>10:<\/strong> 1622-1630. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29860278?dopt=Abstract\">29860278<\/a>.<\/p>\n<p><strong>Wu, L., McCluskey, K., Desmeth, P., Liu, S., Sugawara, H., Yin, Y., Ohkuma, M., Itoh, T., Kim, C. Y., Lee, J.-S., Zhou, Y., Kawasaki, H., Hazb&#243;n, M. H., Robert, V., Boekhout, T., Lima, N., Evtushenko, L., Boundy-Mill, K., Bunk, B., Moore, E. R. B., Eurwilaichitr, L., Ingsriswang, S., Shah, H., Yao, S., Jin, T., Huang, J., Shi, W., Sun, Q., Fan, G., Li, W., Li, X., Kurtb&#246;ke, I., and Ma, J. <\/strong> 2018. The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species. Gigascience <strong>7:<\/strong> giy026. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29718202?dopt=Abstract\">29718202<\/a>.<\/p>\n<p><strong>Yuki, M., Sakamoto, M., Nishimura, Y., and Ohkuma, M.<\/strong> 2018. <em>Lactococcus reticulitermitis<\/em> sp. nov., isolated from the gut of the subterranean termite <em>Reticulitermes speratus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 596-601. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29300157?dopt=Abstract\">29300157<\/a>.<\/p>\n<p><strong>Sakamoto, M., Iino, T., Hamada, M., and Ohkuma, M.<\/strong> 2018. <em>Parolsenella catena<\/em> gen. nov., sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 1165-1172. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29458507?dopt=Abstract\">29458507<\/a>.<\/p>\n<p><strong>Penkhrue, W., Sujarit, K., Kudo, T., Ohkuma, M., Masaki, K., Aizawa, T., Pathom-Aree, W., Khanongnuch, C., and Lumyong, S.<\/strong> 2018. <em>Amycolatopsis oliviviridis<\/em> sp. nov., a novel polylactic acid-bioplastic-degrading actinomycete isolated from paddy soil. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 1448-1454. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29517482?dopt=Abstract\">29517482<\/a>.<\/p>\n<p><strong>Chiba, M., Itabashi, T., Hirai, K., Sakamoto, M., Ohkuma, M., Ishige, T., and Kawasaki, S.<\/strong> 2018. <em>Lactobacillus metriopterae<\/em> sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper <em>Metrioptera engelhardti<\/em>. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 1484-1489. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29543150?dopt=Abstract\">29543150<\/a>.<\/p>\n<p><strong>Sakamoto, M., Iino, T., Yuki, M., and Ohkuma, M.<\/strong> 2018. <em>Lawsonibacter asaccharolyticus<\/em> gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 2074-2081. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29745868?dopt=Abstract\">29745868<\/a>.<\/p>\n<p><strong>Sujarit, K., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S.<\/strong> 2018. <em>Streptomyces venetus<\/em> sp. nov., an actinomycete with a blue aerial mycelium. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 3333-3339. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30168790?dopt=Abstract\">30168790<\/a>.<\/p>\n<p><strong>Tanizawa, Y., Tada, I., Kobayashi, H., Endo, A., Maeno, S., Toyoda, A., Arita, M., Nakamura, Y., Sakamoto, M., Ohkuma, M., and Tohno, M.<\/strong> 2018. <em>Lactobacillus paragasseri<\/em> sp. nov., a sister taxon of <em>Lactobacillus gasseri<\/em>, based on whole-genome sequence analyses. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 3512-3517. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30226464?dopt=Abstract\">30226464<\/a>.<\/p>\n<p><strong>Noda, S., Sakamoto, M., Aihara, C., Yuki, M., Katsuhara, M., and Ohkuma, M.<\/strong> 2018. <em>Lactococcus termiticola<\/em> sp. nov., isolated from the gut of the wood-feeding higher termite <em>Nasutitermes takasagoensis<\/em>. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 3832-3836. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30320546?dopt=Abstract\">30320546<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Kunihiro, T., Iino, T., Yuki, M., and Ohkuma, M.<\/strong> 2018. <em>Mesosutterella multiformis<\/em> gen. nov., sp. nov., a member of the family <em>Sutterellaceae<\/em> and <em>Sutterella megalosphaeroides<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>68:<\/strong> 3942-3950. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30394865?dopt=Abstract\">30394865<\/a>.<\/p>\n<p><strong>Thawai, C., Kanchanasin, P., Ohkuma, M., Kudo, T., and Tanasupawat, S.<\/strong> 2018. Identification and antimicrobial activity of <em>Micromonospora<\/em> strains from Thai peat swamp forest soils. J. Appl. Pharm. Sci. <strong>8:<\/strong> 119-125. DOI: <a href=\"https:\/\/doi.org\/10.7324\/JAPS.2018.8417\">10.7324\/JAPS.2018.8417<\/a>.<\/p>\n<p><strong>Noda, S., Shimizu, D., Yuki, M., Kitade, O., and Ohkuma, M.<\/strong> 2018. Host-symbiont cospeciation of termite-gut cellulolytic protists of the genera <em>Teranympha<\/em> and <em>Eucomonympha<\/em> and their <em>Treponema<\/em> endosymbionts. Microbes Environ. <strong>33:<\/strong> 26-33. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29367472?dopt=Abstract\">29367472<\/a>.<\/p>\n<p><strong>Utami, Y, D., Kuwahara, H., Murakami, T., Morikawa, T., Sugaya, K., Kihara, K., Yuki, M., Lo, N., Deevong, P., Hasin, S., Boonriam, W., Inoue, T., Yamada, A., Ohkuma, M., and Hongoh, Y.<\/strong> 2018. Phylogenetic diversity and single-cell genome analysis of &#8220;<em>Melainabacteria<\/em>&#8220;, a non-photosynthetic cyanobacterial group, in the termite gut. Microbes Environ. <strong>33:<\/strong> 50-57. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29415909?dopt=Abstract\">29415909<\/a>.<\/p>\n<p><strong>Kato, S., Yuki, M., Itoh, T., and Ohkuma, M.<\/strong> 2018. Complete genome sequence of <em>Ferriphaselus amnicola<\/em> strain OYT1, a neutrophilic, stalk forming, iron-oxidizing bacterium. Microbiol. Resour. Announc. <strong>7:<\/strong> e00911-18. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30533675?dopt=Abstract\">30533675<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ikeyama, N., Yuki, M., and Ohkuma, M.<\/strong> 2018. Draft genome sequence of <em>Faecalimonas umbilicata<\/em> JCM 30896<sup>T<\/sup>, an acetate-producing bacterium isolated from human feces. Microbiol. Resour. Announc. <strong>7<\/strong>: e01091-18. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30533935?dopt=Abstract\">30533935<\/a>.<\/p>\n<p><strong>Hazb&#243;n, M. H., Rigouts, L., Schito, M., Ezewudo, M., Kudo, T., Itoh, T., Ohkuma, M., Kiss, K., Wu, L., Ma, J., Hamada, M., Strong, M., Salfinger, M., Daley, C. L., Nick, J. A., Lee, J.-S., Rastogi, N., Couvin, D., Hurtado-Ortiz, R., Bizet, C., Suresh, A., Rodwell, T., Albertini, A., Lacourciere, K. A., Deheer-Graham, A., Alexander, S., Russell, J. E., Bradford, R., and Riojas, M. A.<\/strong> 2018. Mycobacterial biomaterials and resources for researchers. Pathog. Dis. <strong>76:<\/strong> fty042. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29846561?dopt=Abstract\">29846561<\/a>.<\/p>\n<p><strong>Tanimura, A., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S., Ogawa, J., Shima, J., and Takashima, M.<\/strong> 2018. Lipid production via simultaneous conversion of glucose and xylose by a novel yeast, <em>Cystobasidium iriomotense<\/em>. PLOS ONE <strong>13:<\/strong> e0202164. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30208038?dopt=Abstract\">30208038<\/a>.<\/p>\n<p><strong>Suzuki, S., Endoh, R., Manabe, R., Ohkuma, M., and Hirakawa, Y.<\/strong> 2018. Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae <em>Prototheca<\/em>. Sci. Rep. <strong>8:<\/strong> 940. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29343788?dopt=Abstract\">29343788<\/a>.<\/p>\n<p><strong>Hashimoto, A., Hirayama, K., Takahashi, H., Matsumura, M., Okada, G., Chen, C. Y., Huang, J. W., Kakishima M., Ono, T., and Tanaka, K.<\/strong> 2018. Resolving the <em>Lophiostoma bipolare<\/em> complex: Generic delimitations within Lophiostomataceae. Stud. Mycol. <strong>90:<\/strong> 161-189. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29632417?dopt=Abstract\">29632417<\/a>.<\/p>\n<p><strong>Takashima, M., Sriswasdi, S., Manabe, R.-I., Ohkuma, M., Sugita, T., and Iwasaki, W.<\/strong> 2018. A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved &#8216;natural&#8217; hybrid genomes. Yeast <strong>35:<\/strong> 99-111. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29027707?dopt=Abstract\">29027707<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2017\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2016\">2016<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2017<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Tanizawa, Y., Kobayashi, H., Kaminuma, E., Sakamoto, M., Ohkuma, M., Nakamura, Y., Arita, M., and Tohno, M.<\/strong> 2017. Genomic characterization reconfirms the taxonomic status of <em>Lactobacillus parakefiri<\/em>. Biosci. Microbiota Food Health <strong>36:<\/strong> 129-134. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28748134?dopt=Abstract\">28748134<\/a>.<\/p>\n<p><strong>Katahira, S., Muramoto, N., Moriya, S., Nagura, R., Tada, N., Yasutani, N., Ohkuma, M., Onishi, T., and Tokuhiro, K.<\/strong> 2017. Screening and evolution of a novel protist xylose isomerase from the termite <em>Reticulitermes speratus<\/em> for efficient xylose fermentation in <em>Saccharomyces cerevisiae<\/em>. Biotechnol. Biofuels <strong>10:<\/strong> 203. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28852424?dopt=Abstract\">28852424<\/a>.<\/p>\n<p><strong>Izawa, K., Kuwahara, H., Sugaya, K., Lo, N., Ohkuma, M., and Hongoh, Y.<\/strong> 2017. Discovery of ectosymbiotic <em>Endomicrobium<\/em> lineages associated with protists in the gut of stolotermitid termites. Environ. Microbiol. Rep. <strong>9:<\/strong> 411-418. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28556617?dopt=Abstract\">28556617<\/a>.<\/p>\n<p><strong>Tashiro, Y., Hasegawa, Y., Shintani, M., Takaki, K., Ohkuma, M., Kimbara, K., and Futamata, H.<\/strong> 2017. Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells. Front. Microbiol. <strong>8:<\/strong> 571. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28439261?dopt=Abstract\">28439261<\/a>.<\/p>\n<p><strong>Tsuchida, S., Maruyama, F., Ogura, Y., Toyoda, A., Hayashi, T., Okuma, M., and Ushida, K.<\/strong> 2017. Genomic characteristics of <em>Bifidobacterium thermacidophilum<\/em> pig isolates and wild boar isolates reveal the unique presence of a putative mobile genetic element with <em>tetW<\/em> for pig farm isolates. Front. Microbiol. <strong>8:<\/strong> 1540. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28861055?dopt=Abstract\">28861055<\/a>. <\/p>\n<p><strong>Okada, N., Tanimura, A., Hirakawa, H., Takashima, M., Ogawa, J., and Shima, J.<\/strong> 2017. Draft genome sequences of the xylose-fermenting yeast <em>Scheffersomyces shehatae<\/em> NBRC 1983<sup>T<\/sup> and a thermotolerant isolate of <em>S. shehatae<\/em> ATY839 (JCM 18690). Genome Announc. <strong>5:<\/strong> 00347-17. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28522710?dopt=Abstract\">28522710<\/a>.<\/p>\n<p><strong>Uzuhashi, S., Endoh, R., Manabe, R., and Ohkuma, M.<\/strong> 2017. Draft genome sequences of the oomycete <em>Pilasporangium apinafurcum<\/em> strains JCM 30513 and JCM 30514, formerly classified as <em>Pythium apinafurcum<\/em>. Genome Announc. <strong>5:<\/strong> e00899-17. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28860253?dopt=Abstract\">28860253<\/a>.<\/p>\n<p><strong>Yuki, M., Sakamoto, M., Kuwahara, H., Hongoh, Y., and Ohkuma, M.<\/strong> 2017. Draft genome sequence of <em>Lactococcus<\/em> sp. strain Rs-Y01, isolated from the gut of the lower termite <em>Reticulitermes speratus<\/em>. Genome Announc. <strong>5:<\/strong> e00999-17. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28935745?dopt=Abstract\">28935745<\/a>.<\/p>\n<p><strong>Lee, C. G., Yuki, M., Iida, T., Nakaho, K., and Ohkuma, M.<\/strong> 2017. Draft genome sequence of <em>Tepidibacter mesophilus<\/em> strain JCM 16806<sup>T<\/sup> isolated from soil polluted by crude oil in China. Genome Announc. <strong>5:<\/strong> e01308-17. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29167249?dopt=Abstract\">29167249<\/a>.<\/p>\n<p><strong>Jutakanoke, R., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., and Akaracharanya, A.<\/strong> 2017. <em>Allodekkera sacchari<\/em> gen. nov., sp. nov., a yeast species in the Saccharomycetales isolated from a sugar factory. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 250-255. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27902246?dopt=Abstract\">27902246<\/a>.<\/p>\n<p><strong>Sakamoto, M., Iino, T., and Ohkuma, M.<\/strong> 2017. <em>Faecalimonas umbilicata<\/em> gen. nov., sp. nov., isolated from human faeces, and reclassification of <em>Eubacterium contortum<\/em>, <em>Eubacterium fissicatena<\/em> and <em>Clostridium oroticum<\/em> as <em>Faecalicatena contorta<\/em> gen. nov., comb. nov., <em>Faecalicatena fissicatena<\/em> comb. nov. and <em>Faecalicatena orotica<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 1219-1227. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28556772?dopt=Abstract\">28556772<\/a>.<\/p>\n<p><strong>Sripreechasak, P., Phongsopitanun, W., Supong, K., Pittayakhajonwut, P., Kudo, T., Ohkuma, M., and Tanasupawat, S.<\/strong> 2017. <em>Nonomuraea rhodomycinica<\/em> sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 1683-1687. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28155814?dopt=Abstract\">28155814<\/a>.<\/p>\n<p><strong>Minegishi, H., Enomoto, S., Echigo, A., Shimane, Y., Kondo, Y., Inoma, A., Kamekura, M., Takai, K., Itoh, T., Ohkuma, M., Ihara, K., Takahashi-Ando, N., Fukushima, Y., Ishii, S., Yoshida, Y., and Usami, R.<\/strong> 2017. <em>Salinarchaeum chitinilyticum<\/em> sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 2274-2278. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28671534?dopt=Abstract\">28671534<\/a>.<\/p>\n<p><strong>Khunnamwong, P., Ribeiro, J. R. A., Garcia, K. M., Hagler, A. N., Takashima, M., Ohkuma, M., Endoh, R., Sugita, T., Jindamorakot, S., and Limtong, S.<\/strong> 2017. <em>Occultifur plantarum<\/em> f.a., sp. nov., a novel cystobasidiomycetous yeast species. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 2628-2633. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28771126?dopt=Abstract\">28771126<\/a>.<\/p>\n<p><strong>Sujarit, K., Sujada, N., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S.<\/strong> 2017. <em>Pseudonocardia thailandensis<\/em> sp. nov., an actinomycete isolated from a subterranean termite nest. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 2773-2778. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28853680?dopt=Abstract\">28853680<\/a>.<\/p>\n<p><strong>Tohno, M., Tanizawa, Y., Irisawa, T., Masuda, T., Sakamoto, M., Arita, M., Ohkuma, M., and Kobayashi, H.<\/strong> 2017. <em>Lactobacillus silagincola<\/em> sp. nov. and <em>Lactobacillus pentosiphilus<\/em> sp. nov., isolated from silage. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 3639-3644. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28879844?dopt=Abstract\">28879844<\/a>.<\/p>\n<p><strong>Kobayashi, H., Nakasato, T., Sakamoto, M., Ohtani, Y., Terada, F., Sakai, K., Ohkuma, M., and Tohno, M.<\/strong> 2017. <em>Clostridium pabulibutyricum<\/em> sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage. Int. J. Syst. Evol. Microbiol. <strong>67:<\/strong> 4974-4978. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29034861?dopt=Abstract\">29034861<\/a>.<\/p>\n<p><strong>Kuwahara, H., Yuki, M., Izawa, K., Ohkuma, M., and Hongoh, Y.<\/strong> 2017. Genome of &#8216;<em>Ca<\/em>. Desulfovibrio trichonymphae&#8217;, an H<sub>2<\/sub>-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut. ISME J. <strong>11:<\/strong> 766-776. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27801909?dopt=Abstract\">27801909<\/a>.<\/p>\n<p><strong>Tsuchida, S., Murata, K., Ohkuma, M., and Ushida, K.<\/strong> 2017. Isolation of <em>Streptococcus gallolyticus<\/em> with very high degradability of condensed tannins from feces of the wild Japanese rock ptarmigans on Mt. Tateyama. J. Gen. Appl. Microbiol. <strong>63:<\/strong> 195-198. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28392540?dopt=Abstract\">28392540<\/a><\/p>\n<p><strong>Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S.<\/strong> 2017. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. <strong>1537:<\/strong> 139-152. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27924592?dopt=Abstract\">27924592<\/a>.<\/p>\n<p><strong>Lee, C, G., Iida, T., Inoue, Y., Muramoto, Y., Watanabe, H., Hakaho, K., and Ohkuma, M.<\/strong> 2017. Prokaryotic communities at different depths between soils with and without tomato bacterial wilt but pathogen-present in a single greenhouse. Microbes Environ. <strong>32:<\/strong> 118-124. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28502968?dopt=Abstract\">28502968<\/a>.<\/p>\n<p><strong>Haruta, S., Iino, T., Ohkuma, M., Suzuki, K., and Igarashi, Y.<\/strong> 2017. Ca<sup>2+<\/sup> in hybridization solutions for fluorescence <em>in situ<\/em> hybridization facilitates the detection of <em>Enterobacteriaceae<\/em>. Microbes Environ. <strong>32:<\/strong> 142-146. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28515389?dopt=Abstract\">28515389<\/a>.<\/p>\n<p><strong>Lee, C. G., Iida, T., Uwagaki, Y., Otani, Y., Nakaho, K., and Ohkuma, M.<\/strong> 2017. Comparison of prokaryotic and eukaryotic communities in soil samples with and without tomato bacterial wilt collected from different fields. Microbes Environ. <strong>32:<\/strong> 376-385. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29187707?dopt=Abstract\">29187707<\/a>.<\/p>\n<p><strong> Hagen, F., Lumbsch, H. T., Arsic Arsenijevic, V., Badali, H., Bertout, S., Billmyre, R. B., Bragulat, M. R., Caba&#241;es, F. J., Carbia, M., Chakrabarti, A., Chaturvedi, S., Chaturvedi, V., Chen, M., Chowdhary, A., Colom, M. F., Cornely, O. A., Crous, P. W., Cu&#233;tara, M. S., Diaz, M. R., Espinel-Ingroff, A., Fakhim, H., Falk, R., Fang, W., Herkert, P. F., Ferrer Rodr&#237;guez, C., Fraser, J. A., Gen&#233;, J., Guarro, J., Idnurm, A., Illnait-Zaragozi, M. T., Khan, Z., Khayhan, K., Kolecka, A., Kurtzman, C. P., Lagrou, K., Liao, W., Linares, C., Meis, J. F., Nielsen, K., Nyazika, T. K., Pan, W., Pekmezovic, M., Polacheck, I., Posteraro, B., de Queiroz Telles Filho, F., Romeo, O., S&#225;nchez, M., Sampaio, A., Sanguinetti, M., Sriburee, P., Sugita, T., Taj-Aldeen, S. J., Takashima, M., Taylor, J. W., Theelen, B., Tomazin, R., Verweij, P. E., Wahyuningsih, R., Wang, P., and Boekhout, T.<\/strong> 2017. Importance of resolving fungal nomenclature: the case of multiple pathogenic species in the <em>Cryptococcus<\/em> genus. mSphere <strong>2:<\/strong> e00238-17. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28875175?dopt=Abstract\">28875175<\/a>.<\/p>\n<p><strong>Wu, L., Sun, Q., Desmeth, P., Sugawara, H., Xu, Z., McCluskey, K., Smith, D., Alexander, V., Lima, N., Ohkuma, M., Robert, V., Zhou, Y., Li, J., Fan, G., Ingsriswang, S., Ozerskaya, S., and Ma, J.<\/strong> 2017. World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. Nucleic Acids Res. <strong>45:<\/strong> 611-618. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28053166?dopt=Abstract\">28053166<\/a>.<\/p>\n<p><strong>Nakazawa, S., Haramiishi, A., Fukuda, K., Kanayama, Y., Watanabe, T., Yuki, M., Ohkuma, M., Takeda, K., Kimbara, K., and Shintani, M.<\/strong> 2017. Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions. PLOS ONE <strong>12:<\/strong> e0186248. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29023575?dopt=Abstract\">29023575<\/a>.<\/p>\n<p><strong>P&#233;ter, G., Takashima, M., and &#268;ade&#382;, N.<\/strong> 2017. Yeast habitats: different but global, <em>In:<\/em> Buzzini, P., Lachance, M.-A., and Yurkov, A. (eds.), Yeasts in Natural Ecosystems: Ecology, pp. 39-71, Springer, Cham. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-319-61575-2_2\">10.1007\/978-3-319-61575-2_2<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2016\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2015\">2015<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2016<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S., Ogawa, J., and Shima, J.<\/strong> 2016. Lipid production through simultaneous utilization of glucose, xylose, and <small>L<\/small>-arabinose by <em>Pseudozyma hubeiensis<\/em>: a comparative screening study. AMB Express <strong>6:<\/strong> 58. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27566647?dopt=Abstract\">27566647<\/a>.<\/p>\n<p><strong>Ohkuma, M.<\/strong> 2016. The outset of another nitrogenase. Environ. Microbiol. <strong>18:<\/strong> 4. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26249540?dopt=Abstract\">26249540<\/a>.<\/p>\n<p><strong>Cho, O., Ichikawa, T., Kurakado, S., Takashima, M., Manabe, R., Ohkuma, M., and Sugita, T.<\/strong> 2016. Draft genome sequence of the causative antigen of summer-type hypersensitivity pneumonitis, <em>Trichosporon domesticum<\/em> JCM 9580. Genome Announc. <strong>4:<\/strong> e00651-16. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27389271?dopt=Abstract\">27389271<\/a>.<\/p>\n<p><strong>Masuya, H., Manabe, R., Ohkuma, M., and Endoh, R.<\/strong> 2016. Draft genome sequence of <em>Raffaelea quercivora<\/em> JCM 11526, a Japanese oak wilt pathogen associated with the platypodid beetle, <em>Platypus quercivorus<\/em>. Genome Announc. <strong>4:<\/strong> e00755-16. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27469944?dopt=Abstract\">27469944<\/a>.<\/p>\n<p><strong>Izawa, K., Kuwahara, H., Kihara, K., Yuki, M., Lo, N., Itoh, T., Ohkuma, M., and Hongoh, Y.<\/strong> 2016. Comparison of intracellular &#8220;<em>Ca.<\/em> Endomicrobium trichonymphae&#8221; genomovars illuminates the requirement and decay of defense systems against foreign DNA. Genome Biol. Evol. <strong>8:<\/strong> 3099-3107. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27635050?dopt=Abstract\">27635050<\/a>.<\/p>\n<p><strong>Sriswasdi, S., Takashima, M., Manabe, R., Ohkuma, M., Sugita, T., and Iwasaki W.<\/strong> 2016. Global deceleration of gene evolution following recent genome hybridizations in fungi. Genome Res. <strong>26:<\/strong> 1081-1090. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27440871?dopt=Abstract\">27440871<\/a>.<\/p>\n<p><strong>Ike, F., Sakamoto, M., Ohkuma, M., Kajita, A., Matsushita, S., and Kokubo, T.<\/strong> 2016. <em>Filobacterium rodentium<\/em> gen. nov., sp. nov., a member of <em>Filobacteriaceae<\/em> fam. nov. within the phylum <em>Bacteroidetes<\/em>; includes a microaerobic filamentous bacterium isolated from specimens from diseased rodent respiratory tracts. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 150-157. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26476525?dopt=Abstract\">26476525<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Phongsopitanun, W., Suwanborirux, K., Ohkuma, M., and Kudo, T.<\/strong> 2016. <em>Streptomyces actinomycinicus<\/em> sp. nov., isolated from soil of a peat swamp forest. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 290-295. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26510888?dopt=Abstract\">26510888<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Matsumoto, A., Inahashi, Y., Kudo, T., Mori, M., Shiomi, K., Takahashi, Y., and Tanasupawat, S.<\/strong> 2016. <em>Actinoplanes lichenis<\/em> sp. nov., isolated from lichen. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 468-473. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26552374?dopt=Abstract\">26552374<\/a>.<\/p>\n<p><strong>Itoh, T., Onishi, M., Kato, S., Iino, T., Sakamoto, M., Kudo, T., Takashina, T., and Ohkuma, M.<\/strong> 2016. <em>Athalassotoga saccharophila<\/em> gen. nov., sp. nov., isolated from an acidic terrestrial hot spring, and proposal of <em>Mesoaciditogales<\/em> ord. nov. and <em>Mesoaciditogaceae<\/em> fam. nov. in the phylum <em>Thermotogae<\/em>. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1045-1051. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26651491?dopt=Abstract\">26651491<\/a>.<\/p>\n<p><strong>Daroonpunt, R., Itoh, T., Kudo, T., Ohkuma, M., and Tanasupawat, S.<\/strong> 2016. <em>Bacillus piscicola<\/em> sp. nov., isolated from Thai fish sauce (<em>Nam-pla<\/em>). Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1151-1155. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26674773?dopt=Abstract\">26674773<\/a>.<\/p>\n<p><strong>Kunthiphun ,S., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat ,S., and Akaracharanya, A.<\/strong> 2016. <em>Trichosporon heliocopridis<\/em> sp. nov., a ureasenegative basidiomycetous yeast associated with dung beetles (<em>Heliocopris bucephalus<\/em> Fabricius). Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1180-1186. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26674642?dopt=Abstract\">26674642<\/a>.<\/p>\n<p><strong>Irisawa, T., Saputra, S., Kitahara, M., Sakamoto, M., Sulistiani, S., Yulineri, T., Dinoto, A., and Ohkuma, M.<\/strong> 2016. <em>Bacteroides caecicola<\/em> sp. nov. and <em>Bacteroides gallinaceum<\/em> sp. nov., isolated from the caecum of an Indonesian chicken. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1431-1437. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26769263?dopt=Abstract\">26769263<\/a>.<\/p>\n<p><strong>Daroonpunt, R., Tanasupawat, S., Kudo, T., Ohkuma, M., and Itoh, T.<\/strong> 2016. <em>Virgibacillus kapii<\/em> sp. nov., isolated from Thai shrimp paste (<em>Ka-pi<\/em>). Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1832-1837. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26869011?dopt=Abstract\">26869011<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Phongsopitanun, W., Suwanborirux, K., Ohkuma, M., and Kudo, T.<\/strong> 2016. <em>Nocardia rayongensis<\/em> sp. nov., isolated from Thai peat swamp forest soil. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 1950-1955. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26873179?dopt=Abstract\">26873179<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Kudo, T., Ohkuma, M., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S.<\/strong> 2016. <em>Micromonospora sediminis<\/em> sp. nov., isolated from mangrove sediment. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3235-3240. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27220280?dopt=Abstract\">27220280<\/a>.<\/p>\n<p><strong>Songsumanus, A., Kudo, T., Ohkuma, M., Phongsopitanun, W., and Tanasupawat, S.<\/strong> 2016. <em>Actinomadura montaniterrae<\/em> sp. nov., isolated from mountain soil. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3310-3316. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27255441?dopt=Abstract\">27255441<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Kudo, T., Ohkuma, M., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S.<\/strong> 2016. <em>Streptomyces verrucosisporus<\/em> sp. nov., isolated from marine sediments. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3607-3613. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27306744?dopt=Abstract\">27306744<\/a>.<\/p>\n<p><strong>Harada, T., Dang, V. C., Nguyen, D. P., Nguyen, T. A., Sakamoto, M., Ohkuma, M., Motooka, D., Nakamura, S., Uchida, K., Jinnai, M., Yonogi, S., Kawahara, R., Kanki, M., Kawai, T., Kumeda, Y., and Yamamoto, Y.<\/strong> 2016. <em>Enterococcus saigonensis<\/em> sp. nov., isolated from retail chicken meat and liver. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3779-3785. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27374383?dopt=Abstract\">27374383<\/a>.<\/p>\n<p><strong>Tohno, M., Sakamoto, M., Ohkuma, M., and Tajima, K.<\/strong> 2016. <em>Paenibacillus silagei<\/em> sp. nov. isolated from corn silage. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3873-3877. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27380964?dopt=Abstract\">27380964<\/a>.<\/p>\n<p><strong>Klykleung, N., Phongsopitanun, W., Pittayakhajonwut, P., Ohkuma, M., Kudo, T., and Tanasupawat, S.<\/strong> 2016. <em>Streptomyces phyllanthi<\/em> sp. nov., isolated from the stem of <em>Phyllanthus amarus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3923-3928. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27393329?dopt=Abstract\">27393329<\/a>.<\/p>\n<p><strong>Sujarit, K., Kudo, T., Ohkuma, M., Pathom-Aree, W., and Lumyong, S.<\/strong> 2016. <em>Streptomyces palmae<\/em> sp. nov., isolated from oil palm (<em>Elaeis guineensis<\/em>) rhizosphere soil. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 3983-3988. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27405543?dopt=Abstract\">27405543<\/a>.<\/p>\n<p><strong>Minegishi, H., Shimogaki, R., Enomoto, S., Echigo, A., Kondo, Y., Nagaoka, S., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Nunoura, T., Takai, K., and Usami, R.<\/strong> 2016. <em>Halopiger thermotolerans<\/em> sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 4975-4980. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27562780?dopt=Abstract\">27562780<\/a>.<\/p>\n<p><strong>Iino, T., Ohkuma, M., Kamagata, Y., and Amachi, S.<\/strong> 2016. <em>Iodidimonas muriae<\/em> gen. nov., sp. nov., an aerobic iodide-oxidizing bacterium isolated from brine of a natural gas and iodine recovery facility, and proposals of <em>Iodidimonadaceae<\/em> fam. nov., <em>Iodidimonadales<\/em> ord. nov., <em>Emcibacteraceae<\/em> fam. nov. and <em>Emcibacterales<\/em> ord. nov. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 5016-5022. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27566239?dopt=Abstract\">27566239<\/a>.<\/p>\n<p><strong>Kondo, Y., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Tanaka, A., Takahashi-Ando, N., Fukushima, Y., Yoshida, Y., Ihara, K., and Usami, R.<\/strong> 2016. <em>Haloparvum alkalitolerans<\/em> sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>66:<\/strong> 5314-5319. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27666573?dopt=Abstract\">27666573<\/a>.<\/p>\n<p><strong>Hamana, K., Furuchi, T., Hayashi, H., Itoh, T., Ohkuma, M., and Niitsu, M.<\/strong> 2016. Occurrence of two novel linear penta-amines, pyropentamine and homopyropentamine, in extremely thermophilic <em>Thermus composti<\/em>. J. Gen. Appl. Microbiol. <strong>62:<\/strong> 334-339. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27885192?dopt=Abstract\">27885192<\/a>.<\/p>\n<p><strong>Tomihama, T., Nishi, Y., Mori, K., Shirao, T., Iida, T., Uzuhashi, S., Ohkuma, M., and Ikeda, S.<\/strong> 2016. Rice bran amendment suppresses potato common scab by increasing antagonistic bacterial community levels in the rhizosphere. Phytopathology <strong>106:<\/strong> 719-728. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27050572?dopt=Abstract\">27050572<\/a>.<\/p>\n<p><strong>Igai, K., Itakura, M., Nishijima, S., Tsurumaru, H., Suda, W., Tsutaya, T., Tomitsuka, E., Tadokoro, K., Baba, J., Odani, S., Natsuhara, K., Morita, A., Yoneda, M., Greenhill, A. R., Horwood, P. F., Inoue, J., Ohkuma, M., Hongoh, Y., Yamamoto, T., Siba, P. M., Hattori, M., Minamisawa, K., and Umezaki, M.<\/strong> 2016. Nitrogen fixation and <em>nifH<\/em> diversity in human gut microbiota. Sci. Rep. <strong>6:<\/strong> 31942. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27554344?dopt=Abstract\">27554344<\/a>.<\/p>\n<p><strong>Gao, F., Al-Saari, N., Rohul Amin, A. K. M., Sato, K., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hargreaves, P. I., Meirelles, P. M., Thompson, F. L., Thompson, C., Gomez-Gil, B., Sawabe, T., and Sawabe, T.<\/strong> 2016. <em>Vibrio ishigakensis<\/em> sp. nov., in <em>Halioticoli<\/em> clade isolated from seawater in Okinawa coral reef area, Japan. Syst. Appl. Microbiol. <strong>39:<\/strong> 330-335. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27262360?dopt=Abstract\">27262360<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2016. <em>Caldisphaeraceae<\/em>, <em>In:<\/em> Whitman, W. B. (ed.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, pp. 1-3, John Wiley &#038; Sons, Chichester. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.fbm00267\">10.1002\/9781118960608.fbm00267<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2016. <em>Caldisphaera<\/em>, <em>In:<\/em> Whitman, W. B. (ed.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, pp. 1-4, John Wiley &#038; Sons, Chichester. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm01323\">10.1002\/9781118960608.gbm01323<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2016. <em>Vulcanisaeta<\/em>, <em>In:<\/em> Whitman, W. B. (ed.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, pp. 1-7, John Wiley &#038; Sons, Chichester. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm01326\">10.1002\/9781118960608.gbm01326<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2016. <em>Natronolimnobius<\/em>, <em>In:<\/em> Whitman, W. B. (ed.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, pp. 1-8, John Wiley &#038; Sons, Chichester. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm01360\">10.1002\/9781118960608.gbm01360<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2016. <em>Thermogymnomonas<\/em>, <em>In:<\/em> Whitman, W. B. (ed.), Bergey&#8217;s Manual of Systematics of Archaea and Bacteria, pp. 1-5, John Wiley &#038; Sons, Chichester. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm01374\">10.1002\/9781118960608.gbm01374<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2015\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2014\">2014<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2015<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Uzuhashi, S., Okada, G., and Ohkuma, M.<\/strong> 2015. Four new <em>Pythium<\/em> species from aquatic environments in Japan. Antonie van Leeuwenhoek <strong>107:<\/strong> 375-391. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25411087?dopt=Abstract\">25411087<\/a>.<\/p>\n<p><strong>Bangash, A., Ahmed, I., Abbas, S., Kudo, T., Shahzad, A., Fujiwara, T., and Ohkuma, M.<\/strong> 2015. <em>Kushneria pakistanensis<\/em> sp. nov., a novel moderately halophilic bacterium isolated from rhizosphere of a plant (<em>Saccharum spontaneum<\/em>) growing in salt mines of the Karak area in Pakistan. Antonie van Leeuwenhoek <strong>107:<\/strong> 991-1000. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25631404?dopt=Abstract\">25631404<\/a>.<\/p>\n<p><strong>Abbas, S., Ahmed, I., Iida, T., Lee, Y.-J., Busse, H.-J., Fujiwara, T., and Ohkuma, M.<\/strong> 2015. A heavy-metal tolerant novel bacterium, <em>Alcaligenes pakistanensis<\/em> sp. nov., isolated from industrial effluent in Pakistan. Antonie van Leeuwenhoek <strong>108:<\/strong> 859-870. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26238381?dopt=Abstract\">26238381<\/a>.<\/p>\n<p><strong>Abbas, S., Ahmed, I., Kudo, T., Iqbal, M., Lee, Y.-J., Fujiwara, T., and Ohkuma, M.<\/strong> 2015. A heavy metal tolerant novel bacterium, <em>Bacillus malikii<\/em> sp. nov., isolated from tannery effluent wastewater. Antonie van Leeuwenhoek <strong>108:<\/strong> 1319-1330.PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26362330?dopt=Abstract\">26362330<\/a>.<\/p>\n<p><strong>Iino, T., Ito, K., Wakai, S., Tsurumaru, H., Ohkuma, M., and Harayama, S.<\/strong> 2015. Iron corrosion induced by nonhydrogenotrophic nitrate-reducing <em>Prolixibacter<\/em> sp. strain MIC1-1. Appl. Environ. Microbiol. <strong>81:<\/strong> 1839-1846. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25548048?dopt=Abstract\">25548048<\/a>.<\/p>\n<p><strong>Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, K. G., Prasetya, B., Sakamoto, M., and Ohkuma, M.<\/strong> 2015. Fermentation characteristics and microbial diversity of tropical grass-legumes silages. Asian Australas. J. Anim. Sci. <strong>28:<\/strong> 511-518. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25656192?dopt=Abstract\">25656192<\/a>.<\/p>\n<p><strong>Kato, S., Ikehata, K., Shibuya, T., Urabe, T., Ohkuma, M., and Yamagishi, A.<\/strong> 2015. Potential for biogeochemical cycling of sulfur, iron and carbon within massive sulfide deposits below the seafloor. Environ. Microbiol. <strong>17:<\/strong> 1817-1835. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25330135?dopt=Abstract\">25330135<\/a>.<\/p>\n<p><strong>Yuki, M., Kuwahara, H., Shintani, M., Izawa, K., Sato, T., Starns, D., Hongoh, Y., and Ohkuma, M.<\/strong> 2015. Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose. Environ. Microbiol. <strong>17:<\/strong> 4942-4963. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26079531?dopt=Abstract\">26079531<\/a>.<\/p>\n<p><strong>Kato, S., Ohkuma, M., Powell, D. H., Krepski, S. T., Oshima, K., Hattori, M., Shapiro, N., Woyke, T., and Chan, C. S.<\/strong> 2015. Comparative genomic insights into ecophysiology of neutrophilic, microaerophilic iron oxidizing bacteria. Front. Microbiol. <strong>13:<\/strong> 1265. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26617599?dopt=Abstract\">26617599<\/a>.<\/p>\n<p><strong>Pramono, A. K., Sakamoto, M., Iino, T., Hongoh, Y., and Ohkuma, M.<\/strong> 2015. <em>Dysgonomonas termitidis<\/em> sp. nov., isolated from the gut of the subterranean termite <em>Reticulitermes speratus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 681-685. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25428419?dopt=Abstract\">25428419<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Tanasupawat, S., Suwanborirux, K., Ohkuma, M., and Kudo, T.<\/strong> 2015. <em>Actinomadura rayongensis<\/em> sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 890-895. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25525125?dopt=Abstract\">25525125<\/a>.<\/p>\n<p><strong>Thamacharoensuk, T., Kitahara, M., Ohkuma, M., Thongchul, N., and Tanasupawat, S.<\/strong> 2015. <em>Sporolactobacillus shoreae<\/em> sp. nov. and <em>Sporolactobacillus spathodeae<\/em> sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 1220-1226. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25634946?dopt=Abstract\">25634946<\/a>.<\/p>\n<p><strong>Sakamoto, M., Tanaka, Y., Benno, Y., and Ohkuma, M.<\/strong> 2015. <em>Parabacteroides faecis<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 1342-1346. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25667391?dopt=Abstract\">25667391<\/a>.<\/p>\n<p><strong>Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R.<\/strong> 2015. <em>Halococcus agarilyticus<\/em> sp. nov., an agar-degrading haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 1634-1639. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25721723?dopt=Abstract\">25721723<\/a>.<\/p>\n<p><strong>Minegishi, H., Echigo, A., Kuwahara, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R.<\/strong> 2015. <em>Halocalculus aciditolerans<\/em> gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 1640-1645. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25721724?dopt=Abstract\">25721724<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Irisawa, T., Ohmori, H., Masuda, T., Ohkuma, M., and Tajima, K.<\/strong> 2015. <em>Lactobacillus mixtipabuli<\/em> sp. nov. isolated from total mixed ration silage. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 1981-1985. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25807979?dopt=Abstract\">25807979<\/a>.<\/p>\n<p><strong>Kondo, Y., Minegishi, H., Echigo, A, Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Takahashi-Ando, N., Fukushima, Y., Yoshida, Y., and Usami, R.<\/strong> 2015. <em>Halorubrum gandharaense<\/em> sp. nov., an alkaliphilic haloarchaeon from commercial rock salt. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 2345-2350. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25870255?dopt=Abstract\">25870255<\/a>.<\/p>\n<p><strong>Sakamoto, M., Li, D., Shibata, Y., Takeshita, T., Yamashita, Y., and Ohkuma, M.<\/strong> 2015. <em>Porphyromonas pasteri<\/em> sp. nov., isolated from human saliva. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 2511-2515. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25933621?dopt=Abstract\">25933621<\/a>.<\/p>\n<p><strong>Iino, T., Sakamoto, M., and Ohkuma, M.<\/strong> 2015. <em>Prolixibacter denitrificans<\/em> sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus <em>Prolixibacter<\/em> and <em>Prolixibacter bellariivorans<\/em>. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 2865-2869. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25991662?dopt=Abstract\">25991662<\/a>.<\/p>\n<p><strong>Shimane, Y., Minegishi, H., Echigo, A., Kamekura, M., Itoh, T., Ohkuma, M., Tsubouchi, T., Usui, K., Maruyama, T., Usami, R., and Hatada, Y.<\/strong> 2015. <em>Halarchaeum grantii<\/em> sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 3830-3835. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/ 26238453?dopt=Abstract\">26238453<\/a>.<\/p>\n<p><strong>Klykleung, N., Tanasupawat, S., Pittayakhajonwut, P., Ohkuma, M., and Kudo, T.<\/strong> 2015. <em>Amycolatopsis stemonae<\/em> sp. nov., isolated from Thai medicinal plant. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 3894-3899. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26243287?dopt=Abstract\">26243287<\/a>.<\/p>\n<p><strong>Saputra, S., Irisawa, T., Sakamoto, M., Kitahara, M., Sulistiani, Yulinery, T., Ohkuma, M., and Dinoto, A.<\/strong> 2016. <em>Bacteroides caecigallinarum<\/em> sp. nov., isolated from caecum of an Indonesian chicken. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 4341-4346. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/ 26345419?dopt=Abstract\">26345419<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Kudo, T., Mori, M., Shiomi, K., Pittayakhajonwut, P., Suwanborirux, K., and Tanasupawat, S.<\/strong> 2015. <em>Micromonospora fluostatini<\/em> sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 4417-4423. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26358439?dopt=Abstract\">26358439<\/a>.<\/p>\n<p><strong>Dekio, I., Culak, R., Misra, R., Gaulton, T., Fang, M., Sakamoto, M., Ohkuma, M., Oshima, K., Hattori, M., Klenk, H.-P., Rajendram, D., Gharbia, S. E., and Shah, H. N.<\/strong> 2015. Dissecting the taxonomic heterogeneity within <em>Propionibacterium acnes<\/em>: proposal for <em>Propionibacterium acnes<\/em> subsp. <em>acnes<\/em> subsp. nov. and <em>Propionibacterium acnes<\/em> subsp. <em>elongatum<\/em> subsp. nov. Int. J. Syst. Evol. Microbiol. <strong>65:<\/strong> 4776-4787. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26432704?dopt=Abstract\">26432704<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Kudo, T., Ohkuma, M., Suwanborirux, K., and Tanasupawat, S.<\/strong> 2015. <em>Dactylosporangium sucinum<\/em> sp. nov., isolated from Thai peat swamp forest soil. J. Antibiot. <strong>68:<\/strong> 379-384. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25605042?dopt=Abstract\">25605042<\/a>.<\/p>\n<p><strong>Inoue, J., Oshima, K., Suda, W., Sakamoto, M., Iino, T., Noda, S., Hongoh, Y., Hattori, M., and Ohkuma, M.<\/strong> 2015. Distribution and evolution of nitrogen fixation genes in the phylum <em>Bacteroidetes<\/em>. Microbes Environ. <strong>30:<\/strong> 44-50. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25736980?dopt=Abstract\">25736980<\/a>.<\/p>\n<p><strong>Takashima, M., Manabe, R., Iwasaki, W., Ohyama, A., Ohkuma, M., and Sugita, T.<\/strong> 2015. Selection of orthologous genes for construction of a highly resolved phylogenetic tree and clarification of the phylogeny of Trichosporonales species. PLOS ONE <strong>10:<\/strong> e0131217. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26241762?dopt=Abstract\">26241762<\/a>.<\/p>\n<p><strong>Al-Saari, N., Gao, F., Rohul, A. A. K. M., Sato, K., Sato, K., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Meirelles, P. M., Thompson, F. L., Thompson, C., Filho, G. M. A., Gomez-Gil, B., Sawabe, T., and Sawabe, T.<\/strong> 2015. Advanced microbial taxonomy combined with genome-based-approaches reveals that <em>Vibrio astriarenae<\/em> sp. nov., an agarolytic marine bacterium, forms a new clade in <em>Vibrionaceae<\/em>. PLOS ONE <strong>10:<\/strong> e0136279. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26313925?dopt=Abstract\">26313925<\/a>.<\/p>\n<p><strong>Ohkuma, M., Noda, S., Hattori, S., Iida, T., Yuki, M., Starns, D., Inoue, J., Darby, A. C., and Hongoh, Y.<\/strong> 2015. Acetogenesis from H<sub>2<\/sub> plus CO<sub>2<\/sub> and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist. Proc. Natl. Acad. Sci. USA <strong>112:<\/strong> 10224-10230. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25979941?dopt=Abstract\">25979941<\/a>.<\/p>\n<p><strong>Sakamoto, M., Lapidus, A. L., Han, J., Trong, S., Haynes, M., Reddy, T. B. K., Mikhailova, N., Huntemann, M., Pati, A., Ivanova, N. N., Pukall, R., Markowitz, V. M., Woyke, T., Klenk, H.-P., Kyrpides, N. C., and Ohkuma, M.<\/strong> 2015. High quality draft genome sequence of <em>Bacteroides barnesiae<\/em> type strain BL2<sup>T<\/sup> (DSM18169<sup>T<\/sup>) from chicken caecum. Stand. Genomic Sci. <strong>10:<\/strong> 48. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26380636?dopt=Abstract\">26380636<\/a>.<\/p>\n<p><strong>Wang, Q.-M., Groenewald, M., Takashima, M., Theelen, B., Han, P.-J., Liu, X.-Z., Boekhout, T., and Bai, F.-Y.<\/strong> 2015. Phylogeny of yeasts and related filamentous fungi within <em>Pucciniomycotina<\/em> determined from multigene sequence analyses. Stud. Mycol. <strong>81:<\/strong> 27-53. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26955197?dopt=Abstract\">26955197<\/a>.<\/p>\n<p><strong>Kato, S., Suzuki, K., Shibuya, T., Ishibashi, J., Ohkuma, M., and Yamagishi, A.<\/strong> 2015. Experimental assessment of microbial effects on chemical interaction between seafloor massive sulfides and seawater at 4&#8451;, <em>In:<\/em> Ishibashi, J., Okino, K., and Sunamura, M. (eds.), Subseafloor Biosphere Linked to Hydrothermal Systems, pp. 95-103, Springer, Tokyo. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-4-431-54865-2_9\">10.1007\/978-4-431-54865-2_9<\/a>.<\/p>\n<p><strong>Kato, S., Ohkuma, M., and Yamagishi, A.<\/strong> 2015. Intra-field variation of prokaryotic communities on and below the seafloor in the back-arc hydrothermal system of the Southern Mariana Trough, <em>In:<\/em> Ishibashi, J., Okino, K., and Sunamura, M. (eds.), Subseafloor Biosphere Linked to Hydrothermal Systems, pp. 301-311, Springer, Tokyo. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-4-431-54865-2_24\">10.1007\/978-4-431-54865-2_24<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2014\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2013\">2013<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2014<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Huang, I., Sato, Y., Sakamoto, M., Ohkuma, M., Ohnuma, S., Naitoh, T., Shibata, C., Horii, A., Nishimura, J., Kitazawa, H., and Saito, T.<\/strong> 2014. Diversity of microflora in colonic mucus from severe ulcerative colitis patients analyzed by terminal restriction fragment length polymorphism and clone libraries of bacterial 16S rRNA gene sequences. Adv. Microbiol. <strong>4:<\/strong> 857-870. DOI: <a href=\"https:\/\/doi.org\/10.4236\/aim.2014.413095\">10.4236\/aim.2014.413095<\/a>.<\/p>\n<p><strong>Shintani, M., Matsui, K., Inoue, J., Hosoyama, A., Ohji, S., Yamazoe, A., Nojiri, H., Kimbara, K., and Ohkuma, M.<\/strong> 2014. Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community. Appl. Environ. Microbiol. <strong>80:<\/strong> 5283-5290. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24141122?dopt=Abstract\">24141122<\/a>.<\/p>\n<p><strong>Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M., Yamaguchi, S., Sakuradani, E., Ogawa, J., and Shima, J.<\/strong> 2014. Selection of oleaginous yeasts with high lipid productivity for practical biodiesel production. Bioresour. Technol. <strong>153:<\/strong> 230-235. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24368271?dopt=Abstract\">24368271<\/a>.<\/p>\n<p><strong>Nakabachi, A., Ishida, K., Hongoh, Y., Ohkuma, M., and Miyagishima, S.<\/strong> 2014. Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont. Curr. Biol. <strong>24:<\/strong> R640-R641. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25050957?dopt=Abstract\">25050957<\/a>.<\/p>\n<p><strong>Ikeda, R., Ichikawa, T., Miyazaki, Y., Shimizu, N., Ryoke, T., Haru, K., Sugita, T., and Takashima, M.<\/strong> 2014. Detection and characterization of plasminogen receptors on clinical isolates of <em>Trichosporon asahii<\/em>. FEMS Yeast Res. <strong>14:<\/strong> 1186-1195. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25263492?dopt=Abstract\">25263492<\/a>.<\/p>\n<p><strong> Lackner, M., Sybren de Hoog, G., Yang, L., Moreno, L. F., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Fl&ouml;rl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J.-P., Cano-Lira, J.-F., Guarro, J., Gen&eacute;, J., Silva, F. F., Haido, R., Haase, G., Havlicek, V., Garcia-Hermoso, D., Meis, J. F., Hagen, F., Kirchmair, M., Rainer, J., Schwabenbauer, K., Zoderer, M., Meyer, W., Gilgado, F., Schwabenbauer, K., Vicente, V. A., Pieckov&aacute;, E., Regenermel, M., Rath, P.-M., Steinmann, J., Wellington de Alencar, X., Symoens, F., Tintelnot, K., Ulfig, K., Velegraki, A., Tortorano, M. A., Giraud, S., Mina, S., Rigler-Hohenwarter, K., Hernando, F. L., Ramirez-Garcia, A., Pellon, A., Kaur, J., Bergter, E. B., Vieira de Meirelles, J., Dutra da Silva, I., Delhaes, L., Alastruey-Izquerdo, A., Li, R., Lu, Q., Moussa, T., Almaghrabi, O., Al-Zahrani, H., Okada, G., Deng, S., Liao, W., Zeng, J., Issakainen, J., and Lopes, L. C. L.<\/strong> 2014. Proposed nomenclature for <em>Pseudallescheria<\/em>, <em>Scedosporium<\/em> and related genera. Fungal Divers. <strong>67:<\/strong> 1-10. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s13225-014-0295-4\">10.1007\/s13225-014-0295-4<\/a>.<\/p>\n<p><strong>Ohkuma, M., Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., and Hattori, M.<\/strong> 2014. Draft genome sequence of an alkaliphilic and xylanolytic <em>Paenibacillus<\/em> sp. strain JCM 10914, isolated from the gut of a soil-feeding termite. Genome Announc. <strong>2:<\/strong> e01144-13. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24459258?dopt=Abstract\">24459258<\/a>.<\/p>\n<p><strong>Sakamoto, M., Oshima, K., Suda, W., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of three strains of <em>Bacteroides pyogenes<\/em> isolated from a cat and swine. Genome Announc. <strong>2:<\/strong> e01242-13. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24482517?dopt=Abstract\">24482517<\/a>.<\/p>\n<p><strong>Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of three alkaliphilic <em>Bacillus<\/em> strains, <em>Bacillus wakoensis<\/em> JCM 9140<sup>T<\/sup>, <em>Bacillus akibai<\/em> JCM 9157<sup>T<\/sup>, and <em>Bacillus hemicellulosilyticus<\/em> JCM 9152<sup>T<\/sup>. Genome Announc. <strong>2:<\/strong> e01258-13. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24482522?dopt=Abstract\">24482522<\/a>.<\/p>\n<p><strong>Yuki, M., Oshima, K., Suda, W., Sakamoto, M., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequence of <em>Bacteroides reticulotermitis<\/em> strain JCM 10512<sup>T<\/sup>, isolated from the gut of a termite. Genome Announc. <strong>2:<\/strong> e00072-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24526645?dopt=Abstract\">24526645<\/a>.<\/p>\n<p><strong>Ahmed, I., Oshima, K., Suda, W., Kitamura, K., Iida, T., Ohmori, Y., Fujiwara, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequence of the boron-tolerant and moderately halotolerant bacterium <em>Gracilibacillus boraciitolerans<\/em> JCM 21714<sup>T<\/sup>. Genome Announc. <strong>2:<\/strong> e00097-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24558242?dopt=Abstract\">24558242<\/a>.<\/p>\n<p><strong>Yuki, M., Oshima, K., Suda, W., Sakamoto, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma M.<\/strong> 2014. Draft genome sequence of <em>Clostridium straminisolvens<\/em> strain JCM 21531<sup>T<\/sup>, isolated from a cellulose-degrading bacterial community. Genome Announc. <strong>2:<\/strong> e00110-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24558248?dopt=Abstract\">24558248<\/a>.<\/p>\n<p><strong>Starns, D., Oshima, K., Suda, W., Iino, T., Yuki, M., Inoue, J., Kitamura, K., Iida, T., Darby, A., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequence of <em>Cytophaga fermentans<\/em> JCM 21142<sup>T<\/sup>, a facultative anaerobe isolated from marine mud. Genome Announc. <strong>2:<\/strong> e00206-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24675859?dopt=Abstract\">24675859<\/a>.<\/p>\n<p><strong>Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequence of <em>Paenibacillus pini<\/em> JCM 16418<sup>T<\/sup>, isolated from the rhizosphere of pine tree. Genome Announc. <strong>2:<\/strong> e00210-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24652984?dopt=Abstract\">24652984<\/a>.<\/p>\n<p><strong>Kudo, T., Sakamoto, K., Akinaga, M., Kawauchi, A., Nakahara, T., Zhang, X., Yamada, A., Oshima, K., Suda, W., Kuwahara, H., Nakamura, N., Nogi, Y., Kitamura, K., Yuki, M., Iida, T., Moriya, S., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of cyclodextrin-producing alkaliphilic <em>Bacillus<\/em> spp. strains JCM 19045, JCM 19046, and JCM 19047. Genome Announc. <strong>2:<\/strong> e00211-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24652985?dopt=Abstract\">24652985<\/a>.<\/p>\n<p><strong>Yuki, M., Oshima, K., Suda, W., Kitahara, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of two <em>Lactobacillus<\/em> strains, <em>Lactobacillus farraginis<\/em> JCM 14108<sup>T<\/sup> and <em>Lactobacillus composti<\/em> JCM 14202<sup>T<\/sup>, isolated from composts of distilled shochu residue. Genome Announc. <strong>2:<\/strong> e00257-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24675866?dopt=Abstract\">24675866<\/a>.<\/p>\n<p><strong>Kudo, T., Kidera, A., Kida, M., Kawauchi, A., Shimizu, R., Nakahara, T., Zhang, X., Yamada, A., Amano, M., Hamada, Y., Taniyama, S., Arakawa, O., Yoshida, A., Oshima, K., Suda, W., Kuwahara, H., Nogi, Y., Kitamura, K., Yuki, M., Iida, T., Moriya, S., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of <em>Psychrobacter<\/em> strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, isolated preferentially from frozen aquatic organisms. Genome Announc. <strong>2:<\/strong> e00280-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24699965?dopt=Abstract\">24699965<\/a>.<\/p>\n<p><strong>Irisawa, T., Oshima, K., Suda, W., Kitahara, M., Sakamoto, M., Kitamura, K., Iida, T., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequence of <em>Lactobacillus sucicola<\/em> JCM 15457<sup>T<\/sup>, a motile lactic acid bacterium isolated from oak sap. Genome Announc. <strong>2:<\/strong> e00403-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24812225?dopt=Abstract\">24812225<\/a>.<\/p>\n<p><strong>Ivanova, E. P., Ng, H. J., Webb, H. K., Feng, G., Oshima, K., Hattori, M., Ohkuma, M., Sergeev, A. F., Mikhailov, V. V., Crawford, R. J., and Sawabe, T.<\/strong> 2014. Draft genome \uff53equences of <em>Marinobacter similis<\/em> A3d10<sup>T<\/sup> and <em>Marinobacter salarius<\/em> R9SW1<sup>T<\/sup>. Genome Announc. <strong>2:<\/strong> e00442-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24855296?dopt=Abstract\">24855296<\/a>.<\/p>\n<p><strong>Kudo, T., Nakahara, T., Zhang, X., Taniyama, S., Arakawa, O., Murase, S., Nakata, H., Oshima, K., Suda, W., Kitamura, K., Iida, T., Oshida, Y., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of <em>Geomicrobium<\/em> sp. strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, isolated from aquatic samples. Genome Announc. <strong>2:<\/strong> e00622-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24948772?dopt=Abstract\">24948772<\/a>.<\/p>\n<p><strong>Kudo, T., Kawauchi, A., Nakahara, T., Zhang, X., Taniyama, S., Takatani, T., Arakawa, O., Oshima, K., Suda, W., Kitamura, K., Iida, T., Iino, T., Inoue, T., Hongoh, Y., Hattori, M., and Ohkuma, M.<\/strong> 2014. Draft genome sequences of <em>Vibrio<\/em> sp. strains isolated from tetrodotoxin-bearing scavenging gastropod. Genome Announc. <strong>2:<\/strong> e00623-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24948773?dopt=Abstract\">24948773<\/a>.<\/p>\n<p><strong>Al-Saari, N., Meirelles, P. M., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Thompson, F.L., Gomez-Gil, B., Sawabe, T., and Sawabe, T.<\/strong> 2014. Draft genome sequences of two <em>Vibrionaceae<\/em> species, <em>Vibrio ponticus<\/em> C121 and <em>Photobacterium aphoticum<\/em> C119, isolated as coral reef microbiota. Genome Announc. <strong>2:<\/strong> e01095-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25359913?dopt=Abstract\">25359913<\/a>.<\/p>\n<p><strong>Takatani, N., Nakanishi, M., Meirelles, P., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hosokawa, M., Miyashita, K., Thompson, F. L., Niwa, A., Sawabe, T., and Sawabe, T.<\/strong> 2014. Draft genome sequences of marine flavobacterium <em>Algibacter lectus<\/em> strains SS8 and NR4. Genome Announc. <strong>2:<\/strong> e01168-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25395640?dopt=Abstract\">25395640<\/a>.<\/p>\n<p><strong>Takatani, N., Nakanishi, M., Meirelles, P., Mino, S., Suda, W., Oshima, K., Hattori, M., Ohkuma, M., Hosokawa, M., Miyashita, K., Thompson, F. L., Niwa, A., Sawabe, T., and Sawabe, T.<\/strong> 2014. Draft genome sequence of marine flavobacterium <em>Jejuia pallidilutea<\/em> strain 11shimoA1 and pigmentation mutants. Genome Announc. <strong>2:<\/strong> e01236-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25477402?dopt=Abstract\">25477402<\/a>.<\/p>\n<p><strong>Tsuchida, S., Takahashi, S., Philippe, P., Nguema, M., Fujita, S., Kitahara, M., Yamagiwa, J., Ngomanda, A., Ohkuma, M., and Ushida, K.<\/strong> 2014. <em>Bifidobacterium moukalabense<\/em> sp. nov., isolated from the faeces of wild west lowland gorilla (<em>Gorilla gorilla gorilla<\/em>). Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 449-455. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24158945?dopt=Abstract\">24158945<\/a>.<\/p>\n<p><strong>Kato, S., Krepski, S., Chan, C., Itoh, T., and Ohkuma, M.<\/strong> 2014. <em>Ferriphaselus amnicola<\/em> gen. nov., sp. nov., a neutrophilic, stalk-forming, iron-oxidizing bacterium isolated from an iron-rich groundwater seep. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 921-925. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24425821?dopt=Abstract\">24425821<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Matsuyama, S., Kimura, K., Ohkuma, M., and Tajima, K.<\/strong> 2014. <em>Aerococcus vaginalis<\/em> sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of <em>Aerococcus suis<\/em>, <em>Aerococcus viridans<\/em>, <em>Aerococcus urinaeequi<\/em>, <em>Aerococcus urinaehominis<\/em>, <em>Aerococcus urinae<\/em>, <em>Aerococcus christensenii<\/em> and <em>Aerococcus sanguinicola<\/em>. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 1229-1236. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24421273?dopt=Abstract\">24421273<\/a>.<\/p>\n<p><strong>Landell, M. F., Brand&#227;o, L. R., Barbosa, A. C., Ramos, J. P., Safar, S. V., Gomes, F. C., Sousa, F. M., Morais, P. B., Broetto, L., Leoncini, O., Ribeiro, J. R., Fungsin, B., Takashima, M., Nakase, T., Lee, C. F., Vainstein, M. H., Fell, J. W., Scorzetti, G., Vishniac, H. S., Rosa, C. A., and Valente, P.<\/strong> 2014. <em>Hannaella pagnoccae<\/em> sp. nov., a tremellaceous yeast species isolated from plants and soil. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 1970-1977. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24614844?dopt=Abstract\">24614844<\/a>.<\/p>\n<p><strong>Ahmed, I., Kudo, T., Abbas, S., Ehsan, M., Iino, T., Fujiwara, T., and Ohkuma, M.<\/strong> 2014. <em>Cellulomonas pakistanensis<\/em> sp. nov., a moderately halotolerant <em>Actinobacteria<\/em>. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 2305-2311. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24733176?dopt=Abstract\">24733176<\/a>.<\/p>\n<p><strong>Phongsopitanun, W., Thawai, C., Suwanborirux, K., Kudo, T., Ohkuma, M., and Tanasupawat, S.<\/strong> 2014. <em>Streptomyces chumphonensis<\/em> sp. nov., isolated from marine sediments. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 2605-2610. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24814337?dopt=Abstract\">24814337<\/a>.<\/p>\n<p><strong>Irisawa, T., Tanaka, N., Kitahara, M., Sakamoto, M., Ohkuma, M., and Okada S.<\/strong> 2014. <em>Lactobacillus furfuricola<\/em> sp. nov., isolated from Nukadoko, rice bran paste for Japanese pickles. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 2902-2906. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24876240?dopt=Abstract\">24876240<\/a>.<\/p>\n<p><strong>Sakamoto, M., Tanaka, Y., Benno, Y., and Ohkuma, M.<\/strong> 2014. <em>Butyricimonas faecihominis<\/em> sp. nov. and <em>Butyricimonas paravirosa<\/em> sp. nov., isolated from human faeces, and emended description of the genus <em>Butyricimonas<\/em>. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 2992-2997. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24903545?dopt=Abstract\">24903545<\/a>.<\/p>\n<p><strong>Shiratori-Takano, H., Akita, K., Yamada, K., Itoh, T., Sugihara, T., Beppu, T., and Ueda, K.<\/strong> 2014. Description of <em>Symbiobacterium ostreiconchae<\/em> sp. nov., <em>Symbiobacterium turbinis<\/em> sp. nov. and <em>Symbiobacterium terraclitae<\/em> sp. nov., isolated from shellfish, emended description of the genus <em>Symbiobacterium<\/em> and proposal of <em>Symbiobacteriaceae<\/em> fam. nov. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 3375-3383. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25013225?dopt=Abstract\">25013225<\/a>.<\/p>\n<p><strong>Iino, T., Mori, K., Itoh, T., Kudo, T., Suzuki, K., Ohkuma, M.<\/strong> 2014. Description of <em>Mariniphaga anaerophila<\/em> gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the <em>Draconibacteriaceae<\/em> as a later heterotypic synonym of the <em>Prolixibacteraceae<\/em> and description of the family <em>Marinifilaceae<\/em> fam. nov. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 3660-3667. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25096325?dopt=Abstract\">25096325<\/a>.<\/p>\n<p><strong>Tsuchida, S., Kitahara, M., Nguema, P. P. M., Norimitsu, S., Fujita, S., Yamagiwa, J., Ngomanda, A., Ohkuma, M., and Ushida, K.<\/strong> 2014. <em>Lactobacillus gorillae<\/em> sp. nov., isolated from the faeces of captive and wild western lowland gorillas (<em>Gorilla gorilla gorilla<\/em>). Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 4001-4006. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25240022?dopt=Abstract\">25240022<\/a>.<\/p>\n<p><strong>Ahmed, I., Abbas, S., Kudo, T., Iqbal, M., Fujiwara, T., and Ohkuma, M.<\/strong> 2014. <em>Deinococcus citri<\/em> sp. nov., isolated from citrus leaf canker lesions. Int. J. Syst. Evol. Microbiol. <strong>64:<\/strong> 4134-4140. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25256704?dopt=Abstract\">25256704<\/a>.<\/p>\n<p><strong>Sato, T., Kuwahara, H., Fujita, K., Noda, S., Kihara, K., Yamada, A., Ohkuma, M., Hongoh, Y.<\/strong> 2014. Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut. ISME J. <strong>8:<\/strong> 1008-1019. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24335826?dopt=Abstract\">24335826<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Niitsu, M., Itoh, T., and Ohkuma, M.<\/strong> 2014. Long linear and branched polyamines of new thermophilic members located in the bacterial orders <em>Thermotogales<\/em>, <em>Thermales<\/em>, <em>Aquificales<\/em>, <em>Thermodesulfobacteriales<\/em>, <em>Clostridiales<\/em>, <em>Thermoanaerobacterales<\/em>, <em>Bacillales<\/em>, <em>Caldisericales<\/em> and <em>Desulfovibrionales<\/em>, and the family <em>Rhodothermaceae<\/em> &#8211; Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VIII -. J. Jpn. Soc. Extremophiles <strong>13:<\/strong> 32-52.<\/p>\n<p><strong>Namwong, S., Tanasupawat, S., Benjakul, S., Kudo, T., Itoh, T., and Visessanguan, W.<\/strong> 2014. Identification of halophilic strains and its proteolytic degradation of fish protein. Malaysian J. Microbiol. <strong>10:<\/strong> 92-100. DOI: <a href=\"https:\/\/doi.org\/10.21161\/mjm.55713\">10.21161\/mjm.55713<\/a>.<\/p>\n<p><strong>Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, K. G., Praseta, B., Sakamoto, M., and Ohkuma, M.<\/strong> 2014. Methane mitigation and microbial diversity of silage diets containing <em>Calliandra calothyrsus<\/em> in a rumen <em>in vitro<\/em> fermentation system. Media Peternakan <strong>37:<\/strong> 121-128. DOI: <a href=\"https:\/\/doi.org\/10.5398\/medpet.2014.37.2.121\">10.5398\/medpet.2014.37.2.121<\/a>.<\/p>\n<p><strong>Okazaki, K., Iino, T., Kuroda, Y., Taguchi, K., Takahashi, H., Ohwada, T., Tsurumaru, H., Okubo, T., Minamisawa, K., and Ikeda, S.<\/strong> 2014. An assessment of the diversity of culturable bacteria from main root of sugar beet. Microbes Environ. <strong>29:<\/strong>220-223. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24789987?dopt=Abstract\">24789987<\/a>.<\/p>\n<p><strong>Mekha, N., Takashima, M., Boon-Long, J., Cho, O., and Sugita, T.<\/strong> 2014. Three new basidiomycetous yeasts, <em>Pseudozyma alboarmeniaca<\/em> sp. nov., <em>Pseudozyma crassa<\/em> sp. nov. and <em>Pseudozyma siamensis<\/em> sp. nov. isolated from Thai patients. Microbiol. Immunol. <strong>58:<\/strong> 9-14. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24215507?dopt=Abstract\">24215507<\/a><\/p>\n<p><strong>Abbas, S., Ahmed, I., Kudo, T., Iida, T., Ali, G. M., Fujiwara, T., and Ohkuma, M.<\/strong> 2014. Heavy metal-tolerant and psychrotolerant bacterium <em>Acinetobacter pakistanensis<\/em> sp. nov., isolated from a textile dyeing wastewater treatment pond. Pak. J. Agric. Sci. <strong>51:<\/strong> 595-608.<\/p>\n<p><strong>Kyrpides, N. C., Hugenholtz, P., Eisen, J. A., Woyke, T., G&#246;ker, M., Parker, C. T., Amann, R., Beck, B. J., Chain, P. S. G., Chun, J., Colwell, R. R., Danchin, A., Dawyndt, P., Dedeurwaerdere, T., DeLong, E. F., Detter, J. C., De, Vos, P., Donohue, T. J., Dong, X.-Z., Ehrlich, D. S., Fraser, C., Gibbs, R., Gilbert, J., Gilna, P., Gl&#246;ckner, F. O., Jansson, J. K., Keasling, J. D., Knight, R., Labeda, D., Lapidus, A., Lee, J. S., Li, W.-J., Ma, J., Markowitz, V., Moore, E. R., Morrison, M., Meyer, F., Nelson, K. E., Ohkuma, M., Ouzounis, C. A., Pace, N., Parkhill, J., Qin, N., Rossello-Mora, R., Sikorski, J., Smith, D., Sogin, M., Stevens, R., Stingl, U., Suzuki, K., Taylor, D., Tiedje, J. M., Tindall, B., Wagner, M., Weinstock, G., Weissenbach, J., White, O., Wang, J., Zhang, L., Zhou, Y.-G., Field, D., Whitman, W. B., Garrity, G. M., and Klenk, H.-P.<\/strong> 2014. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLOS Biol. <strong>12:<\/strong> e1001920. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25093819?dopt=Abstract\">25093819<\/a>.<\/p>\n<p><strong>Goto, Y., Obata, T., Kunisawa , J., Sato, S., Ivanov, I. I., Lamichhane, A., Takeyama, N., Kamioka, M., Sakamoto, M., Matsuki T., Setoyama, H., Imaoka, A., Uematsu, S., Akira, S., Domino, S. E., Kulig, P., Becher, B., Renauld, J. C., Sasakawa, C., Uemesaki, Y., Benno, Y., and Kiyono, H.<\/strong> 2014. Innate lymphoid cells regulate intestinal epithelial cell glycosylation. Science <strong>345:<\/strong> 1254009. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25214634?dopt=Abstract\">25214634<\/a>.<\/p>\n<p><strong>Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Kikukawa, M., Yamaguchi, S., Sakuradani, E., Ogawa, J., Ohkuma, M., and Shima, J.<\/strong> 2014. <em>Cryptococcus terricola<\/em> is a promising oleaginous yeast for biodiesel production from starch through consolidated bioprocessing. Sci. Rep. <strong>4:<\/strong> 4776. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24758986?dopt=Abstract\">24758986<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2014. The family <em>Caldisphaeraceae<\/em>, <em>In:<\/em> Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes &#8211; Other Major Lineages of Bacteria and the Archaea, pp. 25-28, Springer-Verlag, Heidelberg. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-642-38954-2_333\">10.1007\/978-3-642-38954-2_333<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2014. The family <em>Thermoproteaceae<\/em>, <em>In:<\/em> Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes &#8211; Other Major Lineages of Bacteria and the Archaea, pp. 389-401, Springer-Verlag, Heidelberg. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-642-38954-2_330\">10.1007\/978-3-642-38954-2_330<\/a>.<\/p>\n<p><strong>Sakamoto, M.<\/strong> 2014. The family <em>Porphyromonadaceae<\/em>, <em>In:<\/em> Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F. (eds.), The Prokaryotes &#8211; Other Major Lineages of Bacteria and the Archaea, pp. 811-824, Springer-Verlag, Heidelberg. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-642-38954-2_132\">10.1007\/978-3-642-38954-2_132<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2013\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2012\">2012<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"6\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2013<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Sitdhipol, J., Tanasupawat, S., Tepkasikul, P., Yukphan, P., Tosukhowong, A., Itoh, T., Benjakul, S., and Visessanguan, W.<\/strong> 2013. Identification and histamine formation of <em>Tetragenococcus<\/em> isolated from Thai fermented food products. Ann. Microbiol. <strong>63:<\/strong> 745-753. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s13213-012-0529-1\">10.1007\/s13213-012-0529-1<\/a>.<\/p>\n<p><strong>Kim, T.-Y., Kim, S.-J., Park, S.-J., Kim, J.-G., Cha, I.-T., Jung, M.-Y., Lee, S.-A, Roh, S. W., Yim, K. J., Itoh, T., and Rhee, S.-K.<\/strong> 2013. <em>Natronomonas gomsonensis<\/em> sp. nov., isolated from a solar saltern. Antonie van Leeuwenhoek <strong>104:<\/strong> 627-635. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23851717?dopt=Abstract\">23851717<\/a>.<\/p>\n<p><strong>Kato, S., Chan, C., Itoh, T., and Ohkuma, M.<\/strong> 2013. Functional gene analysis of freshwater iron-rich flocs at circumneutral pH and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium. Appl. Environ. Microbiol. <strong>79:<\/strong> 138-145. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23811518?dopt=Abstract\">23811518<\/a>.<\/p>\n<p><strong>Wu, L., Sun, Q., Sugawara, H., Yang, S., Zhou, Y., McCluskey, K., Vasilenko, A., Suzuki, K., Ohkuma, M., Lee, Y., Robert, V., Ingsriswang, S., Guissart, F., Philippe, D., and Ma, J.<\/strong> 2013. Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, andvisualization system for microbial resources. BMC Genomics <strong>14:<\/strong> 933. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24377417?dopt=Abstract\">24377417<\/a>.<\/p>\n<p><strong>Nakabachi, A., Ueoka, R., Oshima, K., Teta, R., Mangoni, A., Gurgui, M., Oldham, N. J., van Echten-Deckert, G., Okamura, K., Yamamoto, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S, Hattori, M., Piel, J., Fukatsu, T.<\/strong> 2013. Defensive bacteriome symbiont with a drastically reduced genome. Curr. Biol. <strong>23:<\/strong> 1478-1484. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23850282?dopt=Abstract\">23850282<\/a>.<\/p>\n<p><strong>Kato, S., Nakawake, M., Kita, J., Yamanaka, T., Utsumi, M., Okamura, K., Ishibashi, J., Ohkuma, M., and Yamagishi, A.<\/strong> 2013. Characteristics of microbial communities in crustal fluids in a deep-sea hydrothermal field of the suiyo seamount. Front. Microbiol. <strong>4:<\/strong>85. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23626587?dopt=Abstract\">23626587<\/a>.<\/p>\n<p><strong>Mino, S., Makita, H., Toki, T., Miyazaki, J., Kato, S., Watanabe, H., Imachi, H., Watsuji, T., Nunoura, T., Kojima, S., Sawabe, T., Takai, K., and Nakagawa, S.<\/strong> 2013. Biogeography of <em>Persephonella<\/em> in deep-sea hydrothermal vents of the Western Pacific. Front. Microbiol. <strong>4:<\/strong>107. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23630523?dopt=Abstract\">23630523<\/a>.<\/p>\n<p><strong>Sakamoto, M., Tanaka, N., Shiwa, Y., Yoshikawa, H., and Ohkuma, M.<\/strong> 2013. Draft genome sequences of <em>Porphyromonas crevioricanis<\/em> JCM 15906<sup>T<\/sup> and <em>Porphyromonas cansulci<\/em> JCM 13913<sup>T<\/sup> isolated from a canine oral cavity. Genome Announc. <strong>1:<\/strong> e00483-13. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23887912?dopt=Abstract\">23887912<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2013. <em>Porphyromonas crevioricanis<\/em> is an earlier heterotypic synonym of <em>Porphyromonas cansulci<\/em> and has priority. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 454-457. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22467157?dopt=Abstract\">22467157<\/a>.<\/p>\n<p><strong>Songsumanus, A., Tanasupawat, S., Igarashi, Y., and Kudo, T.<\/strong> 2013. <em>Micromonospora maritima<\/em> sp. nov., isolated from mangrove soil. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 554-559. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22523171?dopt=Abstract\">22523171<\/a>.<\/p>\n<p><strong>Supong, K., Suriyachadkun, C., Tanasupawat, S., Suwanborirux, K., Pittayakhajonwut, P., Kudo, T., and Thawai, C.<\/strong> 2013. <em>Micromonospora sediminicola<\/em> sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 570-575. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22523170?dopt=Abstract\">22523170<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2013. <em>Bacteroides reticulotermitis<\/em> sp. nov., isolated from the gut of a subterranean termite (<em>Reticulitermes speratus<\/em>). Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 691-695. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22544795?dopt=Abstract\">22544795<\/a>.<\/p>\n<p><strong>Shimoshige, H., Yamada, T., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., and Usami, R.<\/strong> 2013. <em>Halobaculum magnesiiphilum<\/em> sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 861-866. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22611203?dopt=Abstract\">22611203<\/a>.<\/p>\n<p><strong>Shimane, Y., Nagaoka, S., Minegishi, H., Kamekura, M., Echigo, A., Hatada, Y., Ito, T., and Usami, R.<\/strong> 2013. <em>Natronoarchaeum philippinense<\/em> sp. nov., a haloarchaeon isolated from commercial solar salt. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 920-924. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22659499?dopt=Abstract\">22659499<\/a>.<\/p>\n<p><strong>Thawai, C., Thamsathit, W., and Kudo, T.<\/strong> 2013. <em>Planosporangium thailandense<\/em> sp. nov., isolated from soil from a Thai hot spring. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 1051-1055. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22707531?dopt=Abstract\">22707531<\/a>.<\/p>\n<p><strong>Yamauchi, Y., Minegishi, H., Echigo, A., Shimane, Y., Shimoshige, H., Kamekura, M., Itoh, T., Doukyu, N., Inoue, A., and Usami, R.<\/strong> 2013. <em>Halarchaeum salinum<\/em> sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 1138-1142. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22753525?dopt=Abstract\">22753525<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Inoue, H., Uegaki, R., Irisawa, T., Ohkuma, M., and Tajima, K.<\/strong> 2013. <em>Weissella oryzae<\/em> sp. nov., isolated from fermented rice grains. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 1417-1420. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22843715?dopt=Abstract\">22843715<\/a>.<\/p>\n<p><strong>Ziegler, S., Waidner, B., Itoh, T., Schumann, P., Spring, S., and Gescher, J.<\/strong> 2013. <em>Metallibacterium scheffleri<\/em> gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 1499-1504. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22863988?dopt=Abstract\">22863988<\/a>.<\/p>\n<p><strong>Promnuan, Y., Kudo, T., Ohkuma, M., and Chantawannakul, P.<\/strong> 2013. <em>Streptomyces chiangmaiensis<\/em> sp. nov. and <em>Streptomyces lannensis<\/em> sp. nov., isolated from the South-East Asian stingless bee (<em>Tetragonilla collina<\/em>). Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 1896-1901. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23002051?dopt=Abstract\">23002051<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Uegaki, R., Irisawa, T., Ohkuma, M., and Tajima, K.<\/strong> 2013. <em>Lactobacillus hokkaidonensis<\/em> sp. nov., isolated from subarctic timothy grass (<em>Phleum pratense<\/em> L.) silage. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 2526-2531. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23223820?dopt=Abstract\">23223820<\/a>.<\/p>\n<p><strong>Azuma, R., Ung-Bok, B., Murakami, S., Ishiwata, H., Osaki, M., Shimada, N., Ito, Y., Miyagawa, E., Makino, T., Kudo, T., Takahashi, Y., Yano, I., Murata, R., and Yokoyama, E.<\/strong> 2013. <em>Tonsilliphilus suis<\/em> gen. nov., sp. nov., causing tonsil infections in pigs. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 2545-2552. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23243095?dopt=Abstract\">23243095<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Irisawa, T., Inoue, H., Uegaki, R., Ohkuma, M., and Tajima, K.<\/strong> 2013. <em>Lactobacillus oryzae<\/em> sp. nov., isolated from fermented rice grain (<em>Oryza sativa<\/em> L. subsp. <em>japonica<\/em>). Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 2957-2962. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23378109?dopt=Abstract\">23378109<\/a>.<\/p>\n<p><strong>Yamauchi, Y., Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., Doukyu, N., Inoue, A., and Usami, R.<\/strong> 2013. <em>Halarchaeum rubridurum<\/em> sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 3143-3147. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23435243?dopt=Abstract\">23435243<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakamoto, M., Tsuchida, S., Kawasumi, K., Amao, H., Benno, Y., and Ohkuma, M.<\/strong> 2013. <em>Parabacteroides chinchillae<\/em> sp. nov., isolated from chinchilla (<em>Chincilla lanigera<\/em>) faeces. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 3470-3474. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23563230?dopt=Abstract\">23563230<\/a>.<\/p>\n<p><strong>Echigo, A., Minegishi, H., Shimane, Y., Kamekura, M., Itoh, T., and Usami R.<\/strong> 2013. <em>Halomicroarcula pellucida<\/em> gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 3556-3562. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23563231?dopt=Abstract\">23563231<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M., and Tajima, K.<\/strong> 2013. Description of <em>Lactobacillus iwatensis<\/em> sp. nov., isolated from orchardgrass (<em>Dactylis glomerata<\/em> L.) silage, and <em>Lactobacillus backii<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 3854-3860. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23687059?dopt=Abstract\">23687059<\/a>.<\/p>\n<p><strong>Minegishi, H., Yamauchi, Y., Echigo, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R.<\/strong> 2013. <em>Halarchaeum nitratireducens<\/em> sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 4202-4206. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23771625?dopt=Abstract\">23771625<\/a>.<\/p>\n<p><strong>Endo, A., Irisawa, T., Futagawa-Endo, Y., Salminen, S., Ohkuma, M., and Dicks, L.<\/strong> 2013. <em>Lactobacillus faecis<\/em> sp. nov., isolated from animal faeces. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 4502-4507. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23907223?dopt=Abstract\">23907223<\/a>.<\/p>\n<p><strong>Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M., and Tajima, K.<\/strong> 2013. <em>Lactobacillus silagei<\/em> sp. nov., isolated from orchardgrass silage. Int. J. Syst. Evol. Microbiol. <strong>63:<\/strong> 4613-4618. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23919960?dopt=Abstract\">23919960<\/a>.<\/p>\n<p><strong>Koyanagi, T., Sakamoto, M., Takeuchi, Y., Maruyama, N., Ohkuma, M., and Izumi, Y.<\/strong> 2013. Comprehensive microbiological findings in peri-implantitis and periodontitis. J. Clin. Periodontol. <strong>40:<\/strong> 218-226. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23294017?dopt=Abstract\">23294017<\/a>.<\/p>\n<p><strong>Hattori, S., Hongoh, Y., Itoh, T., Deevong, P., Trakulnaleamsai, S., Noparatnaraporn, N., Kudo, T., and Ohkuma, M.<\/strong> 2013. <em>Sporomusa intestinalis<\/em> sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, <em>Termes comis<\/em> (Termitinae). J. Gen. Appl. Microbiol. <strong>59:<\/strong> 321-324. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24005182?dopt=Abstract\">24005182<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Niitsu, M., Takeda, A., and Itoh, T.<\/strong> 2013. Cellular polyamines of alkaliphilic, halophilic and thermophilic methanogens, and acidophilic and alkaliphilic extreme halophiles, and acidophilic thermophiles belonging to the domain Archaea. -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VII-. J. Jpn. Soc. Extremophiles <strong>12:<\/strong> 18-28.<\/p>\n<p><strong>Songsumanus, A., Kudo, T., Igarashi, Y., and Tanasupawat, S.<\/strong> 2013. Characterization and screening of antimicrobial activity of <em>Micromonospora<\/em> strains from Thai soils. Malaysian J. Microbiol. <strong>9:<\/strong> 260-269. DOI: <a href=\"https:\/\/doi.org\/10.21161\/mjm.51913\">10.21161\/mjm.51913<\/a>.<\/p>\n<p><strong>Iino, T., Tamaki, H., Tamazawa, S., Ueno, Y., Ohkuma, M., Suzuki, K., Igarashi, Y., and Haruta, S.<\/strong> 2013. <em>Candidatus<\/em> Methanogranum caenicola: a novel methanogen from the anaerobic digested sludge, and proposal of <em>Methanomassiliicoccaceae<\/em> fam. nov. and <em>Methanomassiliicoccales<\/em> ord. nov., for a methanogenic lineage of the class <em>Thermoplasmata<\/em>. Microbes Environ. <strong>28:<\/strong> 244-250. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23524372?dopt=Abstract\">23524372<\/a>.<\/p>\n<p><strong>Lorliam, W., Akaracharanya, A., Suzuki, M., Ohkuma, M., and Tanasupawat, S.<\/strong> 2013. Diversity and fermentation products of xylose-utilizing yeasts isolated from buffalo feces in Thailand. Microbes Environ. <strong>28:<\/strong> 354-360. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24005843?dopt=Abstract\">24005843<\/a>.<\/p>\n<p><strong>Nakabachi, A., Nikoh, N., Oshima, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S., Hattori, M., and Fukatsu, T.<\/strong> 2013. Horizontal gene acquisition of liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector. PLOS ONE <strong>8:<\/strong> e82612. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24349319?dopt=Abstract\">24349319<\/a>.<\/p>\n<p><strong>Doi, K., Nishizaki, Y., Kimura, H., Kitahara, M., Fujino, Y., Ohmomo, S., Ohshima, T., and Ogata, S.<\/strong> 2013. Identification of thermo tolerant lactic acid bacteria isolated from silage prepared in the hot and humid climate of Southwestern Japan. SpringerPlus <strong>2:<\/strong> 485. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24130959?dopt=Abstract\">24130959<\/a>.<\/p>\n<p><strong>Yarza, P., Spr&#246;er, C., Swiderski, J., Mrotzek, N., Spring, S., Tindall, B. J., Gronow, S., Pukall, R., Klenk, H.-P., Lang, E., Verbarg, S., Crouch, A., Lilburn, T., Beck, B., Unosson, C., Cardew, S., Moore, E. R. B., Gomila, M., Nakagawa, Y., Janssens, D., De Vos, P., Peiren, J., Suttels, T., Clermont, D., Bizet, C., Sakamoto, M., Iida, T., Kudo, T., Kosako, Y., Oshida, Y., Ohkuma, M., Arahal, D. R. Spieck, E., Pommerening Roeser, A., Figge, M., Park, D., Buchanan, P., Cifuentes, A., Munoz, R., Euz&#233;by, J. P., Schleifer, K.-H., Ludwig, W., Amann, R., Gl&#246;ckner, F. O., and Rossell&#243;-M&#243;ra, R.<\/strong> 2013. Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Syst. Appl. Microbiol. <strong>36:<\/strong> 69-73. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23410935?dopt=Abstract\">23410935<\/a>.<\/p>\n<p><strong>Itoh, T. and Iino, T.<\/strong> 2013. Phylogeny and biological features of thermophiles, <em>In:<\/em> Satyanarayana, T., Littlechild, J., and Kawarabayasi, Y. (eds.), Thermophilic Microbes in Environmental and Industrial Biotechnology, 2nd ed., pp. 249-270, Springer, Dordrecht. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-94-007-5899-5_9\">10.1007\/978-94-007-5899-5_9<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2012\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2011\">2011<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2012<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R., and Cai, Y.<\/strong> 2012. Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim. Sci. J. <strong>83:<\/strong> 111-120. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22339691?dopt=Abstract\">22339691<\/a>.<\/p>\n<p><strong>Saksinchai, S., Suzuki, M., Lumyong, S., Ohkuma, M., and Chantawannakul, P.<\/strong> 2012. Two new species of the genus <em>Candida<\/em> in the <em>Zygoascus<\/em> clade, <em>Candida lundiana<\/em> sp. nov. and <em>Candida suthepensis<\/em> sp. nov., isolated from raw honey in Thailand. Antonie van Leeuwenhoek <strong>101:<\/strong> 633-640. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22105532?dopt=Abstract\">22105532<\/a>.<\/p>\n<p><strong>Mori, K., Iino, T., Suzuki, K., Yamaguchi, K., and Kamagata, Y.<\/strong> 2012. Aceticlastic and NaCl-requiring methanogen &#8220;<em>Methanosaeta pelagica<\/em>&#8221; sp. nov., isolated from marine tidal flat sediment. Appl. Environ. Microbiol. <strong>78:<\/strong> 3416-3423. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22344667?dopt=Abstract\">22344667<\/a>.<\/p>\n<p><strong>Kato. S., Nakawake, M., Ohkuma, M., and Yamagishi, A.<\/strong> 2012. Distribution and phylogenetic diversity of <em>cbbM<\/em> genes encoding RubisCO form II in a deep-sea hydrothermal field revealed by newly designed PCR primers. Extremophiles <strong>16:<\/strong> 277-283. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22212659?dopt=Abstract\">22212659<\/a>.<\/p>\n<p><strong>Kato, S., Nakamura, K., Toki T., Ishibashi J., Tsunogai, U., Hirota, A., Ohkuma, M., and Yamagishi, A.<\/strong> 2012. Iron-based microbial ecosystem on and below the seafloor: a case study of hydrothermal fields of the Southern Mariana Trough. Front. Microbiol. <strong>3:<\/strong> 89. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22435065?dopt=Abstract\">22435065<\/a>.<\/p>\n<p><strong>Liu, Z., Frigaard, N.-U., Vogl, K., Iino, T., Ohkuma, M., Overmann, J., and Bryant, D. A.<\/strong> 2012. Complete genome of <em>Ignavibacterium album<\/em>, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi. Front. Microbiol. <strong>3:<\/strong> 185. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22661972?dopt=Abstract\">22661972<\/a>.<\/p>\n<p><strong>An, K.-D., Degawa, Y., Fujihara, E., Mikawa, T., Ohkuma, M., and Okada, G.<\/strong> 2012. Molecular phylogenetic analyses based on the nuclear rRNA genes and the intron-exon structures of the nuSSU rRNA gene in <em>Dictyocatenulata alba<\/em> (anamorphic <em>Ascomycota<\/em>). Fungal Biol. <strong>116:<\/strong> 1134-1145. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23153804?dopt=Abstract\">23153804<\/a>.<\/p>\n<p><strong>Saksinchai, S., Suzuki, M., Chantawannakul, P., Ohkuma, M., and Lumyong, S.<\/strong> 2012. A novel ascosporogenous yeast species, <em>Zygosaccharomyces siamensis<\/em>, and the sugar tolerant yeasts associated with raw honey collected in Thailand. Fungal Divers. <strong>52:<\/strong> 123-139. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s13225-011-0115-z\">10.1007\/s13225-011-0115-z<\/a>.<\/p>\n<p><strong>Kato, S., Kikuchi, S., Kashiwabara, T., Takahashi, Y., Suzuki, K., Ito, T., Ohkuma, M., and Yamagishi, A.<\/strong> 2012. Prokaryotic abundance and community composition in a freshwater iron-rich microbial mat at circumneutral pH. Geomicrobiol. J. <strong>29:<\/strong> 896-905. DOI: <a href=\"https:\/\/doi.org\/10.1080\/01490451.2011.635763\">10.1080\/01490451.2011.635763<\/a>.<\/p>\n<p><strong>Mori, K., Iino, T., Ishibashi, J., Kimura, H., Hamada, M., and Suzuki, K.<\/strong> 2012. <em>Meiothermus hypogaeus<\/em> sp. nov., a moderately thermophilic bacterium isolated from a hot spring. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 112-117. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21335495?dopt=Abstract\">21335495<\/a>.<\/p>\n<p><strong>Minegishi, H., Kamekura, M., Kitajima-Ihara, T., Nakasone, K., Echigo, A., Shimane, Y., Usami, R., Itoh, T., and Ihara, K.<\/strong> 2012. Gene orders in the upstream of 16S rRNA genes divide genera of the family <em>Halobacteriaceae<\/em> into two groups. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 188-195. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21378133?dopt=Abstract\">21378133<\/a>.<\/p>\n<p><strong>Cai, Y., Pang, H., Kitahara, M., and M. Ohkuma<\/strong> 2012. <em>Lactobacillus nasuensis<\/em> sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus <em>Lactobacillus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 1140-1144. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21724957?dopt=Abstract\">21724957<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakamoto, M., Tsuchida, S., Kawasumi, K., Amao, H., Benno, Y., and Ohkuma, M.<\/strong> 2012. <em>Bacteroides stercorirosoris<\/em> sp. nov. and <em>Bacteroides faecichinchillae<\/em> sp. nov., isolated from chinchilla (<em>Chinchilla lanigera<\/em>) faeces. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 1145-1150. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21724955?dopt=Abstract\">21724955<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2012. <em>Bacteroides sartorii<\/em> is an earlier heterotypic synonym of <em>Bacteroides chinchillae<\/em> and has priority. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 1241-1244. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21764984?dopt=Abstract\">21764984<\/a>.<\/p>\n<p><strong>Iino, T., Suzuki, R., Tanaka, N., Kosako, Y., Ohkuma, M., Komagata, K., and Uchimura, T.<\/strong> 2012. <em>Gluconacetobacter kakiaceti<\/em> sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 1465-1469. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21841006?dopt=Abstract\">21841006<\/a>.<\/p>\n<p><strong>Thawai, C. and Kudo, T.<\/strong> 2012. <em>Promicromonospora thailandica<\/em> sp. nov., isolated from marine sediment. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 2140-2144. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22058317?dopt=Abstract\">22058317<\/a>.<\/p>\n<p><strong>Pang, H., Kitahara, M., Tan, Z., Wang, Y., Qin, G., Ohkuma, M., and Cai, Y.<\/strong> 2012. Reclassification of <em>Lactobacillus kimchii<\/em> and <em>Lactobacillus bobalius<\/em> as later subjective synonyms of <em>Lactobacillus paralimentarius<\/em>. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 2383-2387. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22140166?dopt=Abstract\">22140166<\/a>.<\/p>\n<p><strong>Jabari, L., Gannoun, H., Cayol, J.-L., Hedi, A., Sakamoto, M., Falsen, E., Ohkuma, M., Hamdi, M., Fauque, G., Ollivier, B., and Fardeau, M.-L.<\/strong> 2012. <em>Macellibacteroides fermentans<\/em> gen. nov., sp. nov., a member of the family <em>Porphyromonadaceae<\/em> isolated from an upflow anaerobic filter treating abattoir wastewaters. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 2522-2527. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22180609?dopt=Abstract\">22180609<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2012. Reclassification of <em>Xylanibacter oryzae<\/em> Ueki <em>et al.<\/em> 2006 as <em>Prevotella oryzae<\/em> comb. nov., with an emended description of the genus <em>Prevotella<\/em>. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 2637-2642. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22199207?dopt=Abstract\">22199207<\/a>.<\/p>\n<p><strong>Thanh, V. N., Hai, D. A., Hien, D. D., Takashima, M., and Lachance, M.-A.<\/strong> 2012. <em>Moniliella carnis<\/em> sp. nov. and <em>Moniliella dehoogii<\/em> sp. nov., two novel species of black yeasts isolated from meat processing environments. Int. J. Syst. Evol. Microbiol. <strong>62:<\/strong> 3088-3094. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22863989?dopt=Abstract\">22863989<\/a>.<\/p>\n<p><strong>Iino, T., Suzuki, R., Kosako, Y., Ohkuma, M., Komagata, K., and Uchimura, T.<\/strong> 2012. <em>Acetobacter okinawensis<\/em> sp. nov., <em>Acetobacter papayae<\/em> sp. nov., and <em>Acetobacter persicus<\/em> sp. nov.; novel acetic acid bacteria isolated from stems of sugarcane, fruits, and a flower in Japan. J. Gen. Appl. Microbiol. <strong>58:<\/strong> 235-243. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22878741?dopt=Abstract\">22878741<\/a>.<\/p>\n<p><strong>Hamana, K., Itoh, T., Sakamoto, M., and Hayashi, H.<\/strong> 2012. Covalently linked polyamines in the cell wall peptidoglycan of the anaerobes belonging to the order <em>Selenomonadales<\/em>. J. Gen. Appl. Microbiol. <strong>58:<\/strong> 339-347. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22990495?dopt=Abstract\">22990495<\/a>.<\/p>\n<p><strong>Thong-On, A., Suzuki, K., Noda, S., Inoue, J., Kajiwara, S., and Ohkuma, M.<\/strong> 2012. Isolation and characterization of anaerobic bacteria for symbiotic recycling of uric acid nitrogen in the gut of various termites. Microbes Environ. <strong>27:<\/strong> 186-192. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22791052?dopt=Abstract\">22791052<\/a>.<\/p>\n<p><strong>Furiya, N., Takamshima, M., and Shiotani, T.<\/strong> 2012. Reclassification of citrus pseudo greasy spot causal yeasts, and a proposal of two new species, <em>Sporobolomyces productus<\/em> sp. nov. and <em>S. corallinus<\/em> sp. nov. Mycoscience <strong>53:<\/strong> 261-269. DOI: <a href=\"https:\/\/doi.org\/10.1007\/S10267-011-0163-Y\">10.1007\/S10267-011-0163-Y<\/a>.<\/p>\n<p><strong>Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, S., Spouge, J. L., Levesque, C. A., Chen, W., and Fungal Barcoding Consortium.<\/strong> 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for <em>Fungi<\/em>. PNAS <strong>109:<\/strong> 6241-6246. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22454494?dopt=Abstract\">22454494<\/a>.<\/p>\n<p><strong>Noda, S., Mantini, C., Meloni, D., Inoue, J., Kitade, O., Viscogliosi, E., and Ohkuma, M.<\/strong> 2012. Molecular phylogeny and evolution of Parabasalia with improved taxon sampling and new protein markers of actin and elongation factor-1&#945;. PLOS ONE <strong>7:<\/strong> e29938. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22253832?dopt=Abstract\">22253832<\/a><\/p>\n<p><strong>Takashima, M., Sugita, T., Van, B. H., Nakamura, M., Endoh, R., and Ohkuma, M.<\/strong> 2012. Taxonomic richness of yeasts in Japan within subtropical and cool temperate areas. PLOS ONE <strong>7:<\/strong> e50784. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23226383?dopt=Abstract\">23226383<\/a><\/p>\n<p><strong>Sato, H., Torimura, M., Kitahara, M.,Ohkuma, M., Hotta, Y., and Tamura, H.<\/strong> 2012. Characterization of the <em>Lactobacillus casei<\/em> group based on the profiling of ribosomal proteins coded in <em>S10-spc-alpha<\/em> operons as observed by MALDI-TOF MS. Syst. App. Microbiol. <strong>35:<\/strong> 447-454. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23099260?dopt=Abstract\">23099260<\/a>.<\/p>\n<p><strong>Katano, Y., Fujinami, S., Kawakoshi, A., Nakazawa, H., Oji, S., Iino, T., Oguchi, A., Ankai, A., Fukui, S., Terui, Y., Kamata, S., Harada, T., Tanikawa, S., Suzuki, K., and Fujita, N.<\/strong> 2012. Complete genome sequence of <em>Oscillibacter valericigenes<\/em> Sjm18-20<sup>T<\/sup> (=NBRC 101213<sup>T<\/sup>). Stand. Genomic Sci. <strong>6:<\/strong> 406-414. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23408234?dopt=Abstract\">23408234<\/a>.<\/p>\n<p><strong>Okuda, T., Ono, Y., Aoki, T., and Okada, G.<\/strong> 2012. The Mycological Society of Japan and the Melbourne <em>Code<\/em>. IMA Fungus <strong>3:<\/strong> 48-52. <a href=\"https:\/\/imafungus.biomedcentral.com\/track\/pdf\/10.1007\/BF03449513\">PDF<\/a>.<\/p>\n<p><strong>Enache, M., Popescu, G., Itoh, T., and Kamekura, M.<\/strong> 2012. Halophilic microorganisms from man-made and natural hypersaline environments: physiology, ecology, and biotechnological potential, <em>In:<\/em> Stan-Lotter, H. and Fendrihan, S. (eds.), Adaption of Microbial Life to Environmental Extremes, pp. 173-197, Springer-Verlag, Wien. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-211-99691-1_8\">10.1007\/978-3-211-99691-1_8<\/a>.<\/p>\n<p><strong>Kudo, T.<\/strong> 2012. <em>Herbidospora<\/em> Kudo, Itoh, Miyadoh, Shomura and Seino 1993, 327<sup>VP<\/sup>, <em>In:<\/em> Goodfellow, M., Kampfer, P., Busse, H.-J., Trujillo, M. E., Suzuki, K., Ludwig, W., and Whitman, W. B. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 5, pp. 1827-1831, Springer, New York. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm00199\">10.1002\/9781118960608.gbm00199<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2011\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2010\">2010<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2011<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Todaka, T., Nakamura, R., Moriya, S., Ohkuma, M., Kudo, T., Takahashi, H., and Ishida, N.<\/strong> 2011. Screening of optimal cellulases from symbiotic protists of termites through expression in the secretory pathway of <em>Saccharomyces cerevisiae<\/em>. Biosci. Biotechnol. Biochem. <strong>75:<\/strong> 2260-2263. DOI: <a href=\"https:\/\/doi.org\/10.1271\/bbb.110490\">10.1271\/bbb.110490<\/a>.<\/p>\n<p><strong>Kato, S., Itoh, T., and Yamagishi, A.<\/strong> 2011. Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes. FEMS Microbiol. Lett. <strong>319:<\/strong> 34-43. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21410512?dopt=Abstract\">21410512<\/a>.<\/p>\n<p><strong>Takeda, T., Yun, C.-S., Shintani, M., Yamane, H., and Nojiri, H.<\/strong> 2011. Distribution of genes encoding nucleoid-associated protein homologs in plasmids. Int. J. Evol. Biol. <strong>2011:<\/strong> 685015. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21350637?dopt=Abstract\">21350637<\/a>.<\/p>\n<p><strong>Namwong, S., Tanasupawat, S., Kudo, T., and Itoh, T.<\/strong> 2011. <em>Haloarcula salaria<\/em> sp. nov. and <em>Haloarcula tradensis<\/em> sp. nov., isolated from salt in Thai fish sauce. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 231-236. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20207809?dopt=Abstract\">20207809<\/a>.<\/p>\n<p><strong>Tanaka, N., Romanenko, L. A., Iino, T., Frolova, G. A., and Mikhailov, V. V.<\/strong> 2011. <em>Cocleimonas flava<\/em> gen. nov., sp. nov., a gammaproteobacterium isolated from sand snail (<em>Umbonium costatum<\/em>). Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 412-416. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20348322?dopt=Abstract\">20348322<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T.<\/strong> 2011. <em>Agromyces tropicus<\/em> sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 605-609. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20435752?dopt=Abstract\">20435752<\/a>.<\/p>\n<p><strong>Moriya, T., Hikota, T., Yumoto, I., Ito, T., Terui, Y., Yamagishi, A., and Oshima, T.<\/strong> 2011. <em>Calditerricola satsumensis<\/em> gen. nov., sp. nov. and <em>Calditerricola yamamurae<\/em> sp. nov., extreme thermophiles isolated from a high-temperature compost. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 631-636. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20400666?dopt=Abstract\">20400666<\/a>.<\/p>\n<p><strong>Kitahara, M., Tsuchida, S., Kawasumi, K., Amao, H., Sakamoto, M., Benno, Y., and Ohkuma, M.<\/strong> 2011. <em>Bacteroides chinchillae<\/em> sp. nov. and <em>Bacteroides rodentium<\/em> sp. nov., isolated from chinchilla (<em>Chinchilla lanigera<\/em>) faeces. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 877-881. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20495039?dopt=Abstract\">20495039<\/a>.<\/p>\n<p><strong>Inoue, K, Itoh, T., Ohkuma, M., and Kogure, K.<\/strong> 2011. <em>Halomarina oriensis<\/em> gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 942-946. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20495022?dopt=Abstract\">20495022<\/a>.<\/p>\n<p><strong>P&#233;ter, G., Dlauchy, D., Tornai-Lehoczki, J., Suzuki, M., and Kurtzman, C. P.<\/strong> 2011. <em>Spencermartinsiella europaea<\/em> gen. nov., sp. nov., a new member of the family Trichomonascaceae. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 993-1000. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20435745?dopt=Abstract\">20435745<\/a>.<\/p>\n<p><strong>Shibazaki, A., Omoto, Y., Kudo, T., Yaguchi, T., Saito, A., Ando, A., Mikami, Y., and Gonoi, T.<\/strong> 2011. <em>Streptomyces coacervatus<\/em> sp. nov., isolated from the intestinal tract of <em>Armadillidium vulgare<\/em>. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1073-1077. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20525817?dopt=Abstract\">20525817<\/a>.<\/p>\n<p><strong>Songsumanus, A., Tanasupawat, S., Thawai, C., Suwanborirux, K., and Kudo, T.<\/strong> 2011. <em>Micromonospora humi<\/em> sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1176-1181. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20562246?dopt=Abstract\">20562246<\/a>.<\/p>\n<p><strong>Itoh, T., Yamanoi, K., Kudo, T., and Takashina, T.<\/strong> 2011. <em>Aciditerrimonas ferrireducens<\/em> gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1281-1285. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20639230?dopt=Abstract\">20639230<\/a>.<\/p>\n<p><strong>Kawasaki, S., Kurosawa, K., Miyazaki, M., Yagi, C., Kitajima, Y., Tanaka, S., Irisawa, T., Okada, S., Sakamoto, M., Ohkuma, M., and Niimura, Y.<\/strong> 2011. <em>Lactobacillus floricola<\/em> sp. nov., lactic acid bacteria isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1356-1359. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20601482?dopt=Abstract\">20601482<\/a>.<\/p>\n<p><strong>Cai, Y., Yang, J., Pang, H., and Kitahara, M.<\/strong> 2011. <em>Lactococcus fujiensis<\/em> sp. nov., a lactic acid bacterium isolated from vegetable matter. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1590-1594. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20675438?dopt=Abstract\">20675438<\/a>.<\/p>\n<p><strong>Takashima, M., Van, B. H., An, K.-D., and Ohkuma, M.<\/strong> 2011. <em>Dioszegia rishiriensis<\/em> sp. nov., a novel yeast species from soil collected on Rishiri Island, Hokkaido, Japan. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 1736-1739. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20656806?dopt=Abstract\">20656806<\/a>.<\/p>\n<p><strong>Promnuan, Y., Kudo, T., Ohkuma, M., and Chantawannakul, P.<\/strong> 2011. <em>Actinomadura apis<\/em> sp. nov., isolated from a honey bee (<em>Apis mellifera<\/em>) hive, and the reclassification of <em>Actinomadura cremea<\/em> subsp. <em>rifamycini<\/em> Gauze <em>et al.<\/em> 1987 as <em>Actinomadura rifamycini<\/em> (Gauze <em>et al.<\/em> 1987) sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 2271-2277. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20952541?dopt=Abstract\">20952541<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Kudo, T.<\/strong> 2011. <em>Dactylosporangium tropicum<\/em> sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 2358-2362. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21037030?dopt=Abstract\">21037030<\/a>.<\/p>\n<p><strong>Kawasaki, S., Kurosawa, K., Miyazaki, M., Sakamoto, M., Ohkuma, M., Niimura, Y.<\/strong> 2011. <em>Lactobacillus ozensis<\/em> sp. nov., isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. <strong>61:<\/strong> 2435-2438. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21075903?dopt=Abstract\">21075903<\/a>.<\/p>\n<p><strong>Morita, T., Ogura, Y., Takashima, M., Hirose, N., Fukuoka, T., Imura, T., Kondo, Y., and Kitamoto, D.<\/strong> 2011. Isolation of <em>Pseudozyma churashimaensis<\/em> sp. nov., a novel ustilaginomycetous yeast species as a producer of glycolipid biosurfactants, mannosylerythritol lipds. J. Biosci. Bioeng. <strong>112:<\/strong> 137-144. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21606002?dopt=Abstract\">21606002<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Niitsu, M., Sugata, D., Higuchi, K., and Itoh, T.<\/strong> 2011. Cellular distribution of unusual long linear and branched polyamines within the newly validated thermophiles belonging to the bacterial orders <em>Thermoanaerobacterales<\/em> and <em>Clostridiales<\/em>. -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles VI-. J. Jpn. Soc. Extremophiles <strong>10:<\/strong> 83-89.<\/p>\n<p><strong>Park, S., Yokota, A., Itoh, T., and Park, J.-S.<\/strong> 2011. <em>Sphingomonas jejuensis<\/em> sp. nov., isolated from marine sponge <em>Hymeniacidon flavia<\/em>. J. Microbiol. <strong>49:<\/strong> 238-242. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21538244?dopt=Abstract\">21538244<\/a>.<\/p>\n<p><strong>Odamaki, T., Yonezawa, S., Kitahara, M., Sugahara, Y., Xiao, J.-Z., Yaeshima, T., Iwatsuki, K., and Ohkuma, M.<\/strong> 2011. Novel multiplex polymerase chain reaction primer set for identification of <em>Lactococcus<\/em> species. Lett. Appl. Microbiol. <strong>52:<\/strong> 491-496. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21299580?dopt=Abstract\">21299580<\/a>.<\/p>\n<p><strong>Shintani, M., Horisaki, T., Yamane, H., Ohkuma, M., and Nojiri, H.<\/strong> 2011. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host <em>Psudomonas fluorescens<\/em> Pf0-1 in artificial water microcosms. Microbiology <strong>157:<\/strong> 2276-2286. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21565929?dopt=Abstract\">21565929<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2011. Identification and classification of the genus <em>Bacteroides<\/em> by multilocus sequence analysis. Microbiology <strong>157:<\/strong> 3388-3397. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21948050?dopt=Abstract\">21948050<\/a>.<\/p>\n<p><strong>Shintani, M., Matsumoto, T., Yoshikawa, H., Yamane, H., Ohkuma, M., and Nojiri, H.<\/strong> 2011. DNA rearrangement has occured in the carbazole degradative plasmid pCAR1 and the chromosome of its unsuitable plasmid host, <em>Pseudomonas fluorescens<\/em> Pf0-1. Microbiology <strong>157:<\/strong> 3405-3416. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21948045?dopt=Abstract\">21948045<\/a>.<\/p>\n<p><strong>Endoh, R., Suzuki, M., Okada, G., Takeuchi, Y., and Futai, K.<\/strong> 2011. Fungus symbionts colonizing the galleries of the ambrosia beetle <em>Platypus quercivorus<\/em>. Mirob. Ecol. <strong>62:<\/strong> 106-120. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21384214?dopt=Abstract\">21384214<\/a>.<\/p>\n<p><strong>Gams, W., Jaklitsch, W., and 77 signatories.<\/strong> 2011. Fungal nomenclature 3. A critical response to the &#8216;Amsterdam Declaration&#8217;. Mycotaxon <strong>116:<\/strong> 501-512. DOI: <a href=\"https:\/\/doi.org\/10.5248\/116.501\">10.5248\/116.501<\/a>.<\/p>\n<p><strong>Crous, P. W., Groenewald, J. Z., Shivas, R. G., Edwards, J., Seifert, K. A., Alfenas, A. C., Alfenas, R. F., Burgess, T. I., Carnegie, A. J., Hardy, G. E. St. J., Hiscock, N., Huberli, D., Jung, T., Louis-Seize, G., Okada, G., Pereira, O. L., Stukely, M. J. C., Wang, W., White, G. P., Young, A. J., McTaggart, A. R., Pascoe, I. G., Porter, I. J., and Quaedvlieg, W.<\/strong> 2011. Fungal Planet description sheets: 69-91. Persoonia <strong>26:<\/strong> 108-156. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22025808?dopt=Abstract\">22025808<\/a>.<\/p>\n<p><strong>Shintani, M., Tokumaru, H., Takahashi, Y., Miyakoshi, M., Yamane, H., Nishida, H., and Nojiri, H.<\/strong> 2011. Alterations of RNA maps of IncP-7 plasmid pCAR1 in various <em>Pseudomonas<\/em> bacteria. Plasmid <strong>66:<\/strong> 85-92. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21708189?dopt=Abstract\">21708189<\/a>.<\/p>\n<p><strong>Sugita, T., Tajima, M., Tsubuku, H., Miyamoto, M., Zhang, E., Tsuboi, R., Takashima, M., Ishibashi, Y., and Nishikawa, A.<\/strong> 2011. <em>Malasseizia<\/em>, <em>In:<\/em> Liu, D. (ed.), Molecular Detection of Human Fungal Pathogens, pp. 643-651, CRC Press, New York.<\/p>\n<p><strong>Sugita, T., Ikeda, R., Nishikawa, A., Takashima, M., Mekha, N., Poonwan, N., Kalkanci, A., and Kustimur, S.<\/strong> 2011. <em>Trichosporon<\/em>, <em>In:<\/em> Liu, D. (ed.), Molecular Detection of Human Fungal Pathogens, pp. 681-686, CRC Press, New York.<\/p>\n<p><strong>Seifert, K. and Okada, G.<\/strong> 2011. Keys: Synnematous hyphomycete genera, <em>In:<\/em> Seifert, K., Morgan-Jones, G., Gams, W., and Kendrick, B. (eds.), The Genera of Hyphomycetes, pp. 929-940, CBS-KNAW Fungal Biodiversity Centre, Utrecht, Netherlands.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 2011. <em>Dioszegia<\/em> Zsolt emend. Takashima, Deak &amp; Nakase (2001), <em>In:<\/em> Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts &#8211; A Taxonomic Study (5th ed.), pp. 1747-1757, Elsevier, San Diego.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 2011. <em>Kockovaella<\/em> Nakase, Banno &amp; Yamada (1991), <em>In:<\/em> Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts &#8211; A Taxonomic Study (5th ed.), pp. 1781-1794, Elsevier, San Diego.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 2011. <em>Udeniomyces<\/em> Nakase &amp; Takematsu (1992), <em>In:<\/em> Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.), The Yeasts &#8211; A Taxonomic Study (5th ed.), pp. 2063-2068, Elsevier, San Diego.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2010\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2009\">2009<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2010<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Morita, T., Takashima, M., Fukuoka, T., Konishi, M., Imura, T., and Kitamoto, D.<\/strong> 2010. Isolation of basidiomycetous yeast <em>Pseudozyma tsukubaensis<\/em> and production of glycolipid biosurfactant, a diastereomer type of mannosylerythritol lipid-B. Appl. Microbiol. Biotechnol. <strong>88:<\/strong> 679-688. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20652239?dopt=Abstract\">20652239<\/a>.<\/p>\n<p><strong>Yamagishi, A., Yokobori, S., Yoshimura, Y., Yamashita, M., Hashimoto, H., Kubota, T., Yano, H., Haruyama, J., Tabata, M., Kobayashi, K., Honda, H., Utsumi, Y., Saiki, T., Itoh, T., Miyakawa, A., Hamase, K., Naganuma, T., Mita, H., Tonokura, K., Sasaki, S., and Miyamoto, H.<\/strong> 2010. Japan Astrobiology Mars Project (JAMP): Search for microbes on the Mars surface with special interest in methane-oxidizing bacteria. Biol. Sci. Space <strong>24:<\/strong> 67-82. DOI: <a href=\"https:\/\/doi.org\/10.2187\/bss.24.67\">10.2187\/bss.24.67<\/a>.<\/p>\n<p><strong>Nakazawa, Y., Suzuki, R., Uchino, M., Sagane, Y., Kudo, T., Nagai, T., Sato, H., and Takano, K.<\/strong> 2010. Identification of actinomycetes producing phospholipase D with high transphosphatidylation activity. Curr. Microbiol. <strong>60:<\/strong> 365-372. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19937030?dopt=Abstract\">19937030<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakamoto, M., and Benno, Y.<\/strong> 2010. <em>Lactobacillus similis<\/em> sp. nov., isolated from fermented cane molasses. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 187-190. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19648343?dopt=Abstract\">19648343<\/a>.<\/p>\n<p><strong>Sakamoto, M., Suzuki, N., and Okamoto, M.<\/strong> 2010. <em>Prevotella aurantiaca<\/em> sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 500-503. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19654360?dopt=Abstract\">19654360<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Jongrungruangchok, S., and Kudo, T.<\/strong> 2010. <em>Micromonospora marina<\/em> sp. nov., isolated from sea sand. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 648-652. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19656925?dopt=Abstract\">19656925<\/a>.<\/p>\n<p><strong>Yang, Y., Itoh, T., Yokobori, S., Shimada, H., Itahashi, S., Satoh, K., Ohba, H., Narumi, I., and Yamagishi, A.<\/strong> 2010. <em>Deinococcus aetherius<\/em> sp. nov., isolated from the stratosphere. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 776-779. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19656935?dopt=Abstract\">19656935<\/a>.<\/p>\n<p><strong>Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T.<\/strong> 2010. <em>Gracilibacillus thailandensis<\/em> sp. nov., from fermented fish (<em>pla-ra<\/em>). Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 944-948. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19661518?dopt=Abstract\">19661518<\/a>.<\/p>\n<p><strong>Burns, D. G., Janssen, P. H., Itoh, T., Minegishi, H., Usami, R., Kamekura, M., and Dyall-Smith, M. L.<\/strong> 2010. <em>Natronomonas moolapensis<\/em> sp. nov., non-alkaliphilic isolates recovered from a solar saltern crystallizer pond, and emended description of the genus <em>Natronomonas<\/em>. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1173-1176. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19667395?dopt=Abstract\">19667395<\/a>.<\/p>\n<p><strong>Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Echigo, A., and Dyall-Smith, M. L.<\/strong> 2010. <em>Halonotius pteroides<\/em> gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1196-1199. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19667389?dopt=Abstract\">19667389<\/a>.<\/p>\n<p><strong>Vishniac, H. S. and Takashima, M.<\/strong> 2010. <em>Rhodotorula arctica<\/em> sp. nov., a basidiomycetous yeast from Arctic soil. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1215-1218. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19666804?dopt=Abstract\">19666804<\/a>.<\/p>\n<p><strong>Iino, T., Mori, K., Uchino, Y., Nakagawa, T., Harayama, S., and Suzuki, K.<\/strong> 2010. <em>Ignavibacterium album<\/em> gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of <em>Ignavibacteria<\/em> classis nov., for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1376-1382. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19671715?dopt=Abstract\">19671715<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T.<\/strong> 2010. <em>Actinaurispora siamensis<\/em> gen. nov., sp. nov., a new member of the family <em>Micromonosporaceae<\/em>. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1660-1666. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19734290?dopt=Abstract\">19734290<\/a>.<\/p>\n<p><strong>Jin, J.-S., Kitahara, M., Sakamoto, M., Hattori, M., and Benno, Y.<\/strong> 2010. <em>Slackia equolifaciens<\/em> sp. nov., a human intestinal bacterium capable of producing equol. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 1721-1724. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19734283?dopt=Abstract\">19734283<\/a>.<\/p>\n<p><strong>Minegishi, H., Kamekura, M., Itoh, T., Echigo, A., Usami, R., and Hashimoto, T.<\/strong> 2010. Further refinement of the phylogeny of the <em>Halobacteriaceae<\/em> based on the full-length RNA polymerase subunit B&#8217; (<em>rpoB&#8217;<\/em>) gene. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 2398-2408. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19946058?dopt=Abstract\">19946058<\/a>.<\/p>\n<p><strong>Endo, A., Futagawa-Endo, Y., Sakamoto, M., Kitahara, M., and Dicks, L. M. T.<\/strong> 2010. <em>Lactobacillus florum<\/em> sp. nov., a fructophilic species isolated from flowers. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 2478-2482. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19965998?dopt=Abstract\">19965998<\/a>.<\/p>\n<p><strong>Iino, T., Mori, K., and Suzuki, K.<\/strong> 2010. <em>Methanospirillum lacunae<\/em> sp. nov., a methane-producing archaeon isolated from a puddly soil, and emended descriptions of the genus <em>Methanospirillum<\/em> and <em>Methanospirillum hungatei<\/em>. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 2563-2566. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20008107?dopt=Abstract\">20008107<\/a>.<\/p>\n<p><strong>Sakamoto, M., Suzuki, N., and Benno, Y.<\/strong> 2010. <em>hsp60<\/em> and 16S rRNA gene sequence relationships among species of the genus <em>Bacteroides<\/em> with the finding that <em>Bacteroides suis<\/em> and <em>Bacteroides tectus<\/em> are heterotypic synonyms of <em>Bacteroides pyogenes<\/em>. Int. J. Syst. Evol. Microbiol. <strong>60:<\/strong> 2984-2990. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20118288?dopt=Abstract\">20118288<\/a>.<\/p>\n<p><strong>Sugiyama, Y., Oya, A., Kudo, T., and Hirota, A.<\/strong> 2010. Surugapyrone A from <em>Streptomyces coelicoflavus<\/em> strain USF-6280 as a new DPPH radical-scavenger. J. Antibiot. <strong>63:<\/strong> 365-369. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20588303?dopt=Abstract\">20588303<\/a>.<\/p>\n<p><strong>Nakase, T., Imanishi, Y., Ninomiya, S., and Takashima, M.<\/strong> 2010. <em>Candida rishirensis<\/em> sp. nov., a novel methylotrophic anamorphic yeast species isolated from soil on Rishiri Island in Japan. J. Gen. Appl. Microbiol. <strong>56:<\/strong> 169-173. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20513965?dopt=Abstract\">20513965<\/a>.<\/p>\n<p><strong>Suzuki, R., Zhang, Y., Iino, T., Kosako, Y., Komagata, K., and Uchimura, T.<\/strong> 2010. <em>Asaia astilbes<\/em> sp. nov., <em>Asaia platycodi<\/em> sp. nov., and <em>Asaia prunellae<\/em> sp. nov., novel acetic acid bacteria isolated from flowers in Japan. J. Gen. Appl. Microbiol. <strong>56:<\/strong> 339-346. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20953098?dopt=Abstract\">20953098<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Chamroensaksri, N., Kudo, T., and Itoh, T.<\/strong> 2010. Identification of moderately halophilic bacteria from Thai fermented fish (<em>pla-ra<\/em>) and proposal of <em>Virgibacillus siamensis<\/em> sp. nov. J. Gen. Appl. Microbiol. <strong>56:<\/strong> 369-379. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21099133?dopt=Abstract\">21099133<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Ohkuma, M.<\/strong> 2010. Usefulness of the <em>hsp60<\/em> gene for the identification and classification of Gram-negative anaerobic rods. J. Med. Microbiol. <strong>59:<\/strong> 1293-1302. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20671088?dopt=Abstract\">20671088<\/a>.<\/p>\n<p><strong>Koyanagi, T., Sakamoto, M., Takeuchi, Y., Ohkuma, M., and Izumi, Y.<\/strong> 2010. Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library. J. Oral Microbiol. <strong>2:<\/strong> 5104. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21523229?dopt=Abstract\">21523229<\/a>.<\/p>\n<p><strong>Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S.<\/strong> 2010. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. <strong>666:<\/strong> 71-85. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20717779?dopt=Abstract\">20717779<\/a>.<\/p>\n<p><strong>Kurtzman, C. P. and Suzuki, M.<\/strong> 2010. Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera <em>Babjeviella<\/em>, <em>Meyerozyma<\/em>, <em>Millerozyma<\/em>, <em>Priceomyces<\/em> and <em>Scheffersomyces<\/em>. Mycoscience <strong>51:<\/strong> 2-14. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10267-009-0011-5\">10.1007\/s10267-009-0011-5<\/a>.<\/p>\n<p><strong>Yamazaki, Y., Akashi, R., Banno, Y., Endo, T., Ezura, H., Fukami-Kobayashi, K., Inaba, K., Isa, T., Kamei, K., Kasai, F., Kobayashi, M., Kurata, N., Kusaba, M., Matuzawa, T., Mitani, S., Nakamura, T., Nakamura, Y., Nakatsuji, N., Naruse, K., Niki, H., Nitasaka, E., Obata, Y., Okamoto, H., Okuma, M., Sato, K., Serikawa, T., Shiroishi, T., Sugawara, H., Urushibara, H., Yamamoto, M., Yaoita, Y., Yoshiki, A., and Kohara, Y.<\/strong> 2010. NBRP databases: databases of biological resources in Japan. Nuleic Acids Res. <strong>38:<\/strong> D26-D32. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19934255?dopt=Abstract\">19934255<\/a>.<\/p>\n<p><strong>Todaka, N., Inoue, T., Saita, K., Ohkuma, M., Nalepa, C., A., Lenz, M., Kudo, T., and Moriya, S.<\/strong> 2010. Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach. PLOS ONE <strong>5:<\/strong> e8636. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20072608?dopt=Abstract\">20072608<\/a>.<\/p>\n<p><strong>Obata, T., Goto, Y., Kunisawa, J., Sato, S., Sakamoto, M., Setoyama, H., Matsuki, T., Nonaka, K., Shibata, N., Gohda, M., Kagiyama, Y., Nochi, T., Yuki, Y., Fukuyama, Y., Mukai, A., Shinzaki, S., Fujihashi, K., Sasakawa, C., Iijima, H., Goto, M., Umesaki, Y., Benno, Y., and Kiyono, H.<\/strong> 2010. Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis. Proc. Natl. Acad. Sci. USA <strong>107:<\/strong> 7419-7424. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20360558?dopt=Abstract\">20360558<\/a>.<\/p>\n<p><strong>Bonfante, P., Visick, K., and Ohkuma, M.<\/strong> 2010. Symbiosis in the omics era. Environ. Microbiol. Rept. <strong>2:<\/strong> 475-478.<\/p>\n<p><strong>Seifert, K. and Okada, G.<\/strong> 2010. International Commission on the Taxonomy of Fungi (ICTF). IMA Fungus <strong>1:<\/strong> 11-12.<\/p>\n<p><strong>Okabe, S., Oshiki, M., Kamagata, Y., Yamaguchi, N., Toyofuku, M., Yawata, Y., Tashiro, Y., Nomura, N., Ohta, H., Ohkuma, M., Hiraishi, A., and Minamisawa, K.<\/strong> 2010. A great leap forward in microbial ecology. Microbes Environ. <strong>25:<\/strong> 230-240. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21576878?dopt=Abstract\">21576878<\/a>.<\/p>\n<p><strong>Shintani, M., Takahashi, Y., Yamane, H., and Nojiri, H.<\/strong> 2010. The behavior and significance of degradative plasmids belonging to Inc groups in <em>Pseudomonas<\/em> within natural environments and microcosms. Microbes Environ. <strong>25:<\/strong> 253-265. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21576880?dopt=Abstract\">21576880<\/a>.<\/p>\n<p><strong>Sakamoto, M., Tanner, A. C. R, and Benno, Y.<\/strong> 2010. <em>Tannerella<\/em> Sakamoto, Suzuki, Umeda, Ishikawa and Benno 2002, 848<sup>VP<\/sup>, <em>In:<\/em> Krieg, N. R., Staley, J. T., Brown, D. R., Hedlund, B. P., Paster, B. J., Ward, N. L., Ludwig, W., and Whitman, W. B. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 4, pp. 78-85, Springer, New York. DOI: <a href=\"https:\/\/doi.org\/10.1002\/9781118960608.gbm00248\">10.1002\/9781118960608.gbm00248<\/a>.<\/p>\n<p><strong>Ohkuma, M. and Brune, A.<\/strong> 2010. Diversity, structure, and evolution of the termite gut microbial community, <em>In:<\/em> Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 413-438, Springer Science+Business Media, Dordrecht. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-90-481-3977-4_15\">10.1007\/978-90-481-3977-4_15<\/a>.<\/p>\n<p><strong>Brune, A. and Ohkuma, M.<\/strong> 2010. Role of the termite gut-microbiota in symbiotic digestion, <em>In:<\/em> Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 439-475, Springer Science+Business Media, Dordrecht. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-90-481-3977-4_16\">10.1007\/978-90-481-3977-4_16<\/a>.<\/p>\n<p><strong>Hongo, Y. and Ohkuma, M.<\/strong> 2010. Termite gut flagellates and their methanogenic and eubacterial symbionts, <em>In:<\/em> Hackstein, J. H. P. (ed.), Microbiology Monographs, vol. 19, (Endo)symbiotic Methanogenic Archaea, pp. 55-79, Springer-Verlag, Berlin. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-3-642-13615-3_5\">10.1007\/978-3-642-13615-3_5<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2009\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2008\">2008<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<table width=\"100%\" style=\"text-align: center\" bgcolor=\"#3CB371\">\n<tbody>\n<tr>\n<td style=\"text-align: center\"><strong>2009<\/strong><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Noda, S., Hongoh, Y., Sato, T., and Ohkuma, M.<\/strong> 2009. Complex coevolutionary history of symbiotic <em>Bacteroidales<\/em> bacteria of various protists in the gut of termites. BMC Evol. Biol. <strong>9:<\/strong> 158. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19586555?dopt=Abstract\">19586555<\/a>.<\/p>\n<p><strong>Kajiura, T., Takeda, T., Sakata, S., Sakamoto, M., Hashimoto, M., Suzuki, H., Suzuki, M., and Benno, Y.<\/strong> 2009. Change of intestinal microbiota with elemental diet and its impact on therapeutic effects in a murine model of chronic colitis. Dig. Dis. Sci. <strong>54:<\/strong> 1892-1900. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19058004?dopt=Abstract\">19058004<\/a>.<\/p>\n<p><strong>Sato, T., Hongoh, Y., Noda, S., Hattori, S., Ui, S., and Ohkuma, M.<\/strong> 2009. <em>Candidatus<\/em> Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate <em>Trichonympha agilis<\/em> in termite gut. Environ. Microbiol. <strong>11:<\/strong> 1007-1015. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19170725?dopt=Abstract\">19170725<\/a>.<\/p>\n<p><strong>Takashima, M., Sugita, T., Toriumi, Y., and Nakase, T.<\/strong> 2009. <em>Cryptococcus tepidarius<\/em> sp. nov., a thermotolerant yeast species isolated from a stream from a hot-spring area in Japan. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 181-185. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19126744?dopt=Abstract\">19126744<\/a>.<\/p>\n<p><strong>Sakamoto, M., Kumada, H., Hamada, N., Takahashi, Y., Okamoto, M., Bakir, M. A., and Benno, Y.<\/strong> 2009. <em>Prevotella falsenii<\/em> sp. nov., a <em>Prevotella intermedia<\/em>-like organism isolated from monkey dental plaque. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 319-322. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19196771?dopt=Abstract\">19196771<\/a>.<\/p>\n<p><strong>Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T.<\/strong> 2009. <em>Salinivibrio siamensis<\/em> sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 880-885. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19329624?dopt=Abstract\">19329624<\/a>.<\/p>\n<p><strong>Sakamoto, M., Takagaki, A., Matsumoto, K., Kato, Y., Goto, K., and Benno, Y.<\/strong> 2009. <em>Butyricimonas synergistica<\/em> gen. nov., sp. nov. and <em>Butyricimonas virosa<\/em> sp. nov., butyric acid-producing bacteria in the family &#8216;<em>Porphyromonadaceae<\/em>&#8216; isolated from rat faeces. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 1748-1753. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19542124?dopt=Abstract\">19542124<\/a>.<\/p>\n<p><strong>Yang, Y., Itoh, T., Yokobori, S., Itahashi, S., Shimada, H., Satoh, K., Ohba, Hirofumi, Narumi, I., and Yamagishi, A.<\/strong> 2009. <em>Deinococcus aerius<\/em> sp. nov., isolated from the high atmosphere. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 1862-1866. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19567578?dopt=Abstract\">19567578<\/a>.<\/p>\n<p><strong>Sakamoto, M., Suzuki, N., Matsunaga, N., Koshihara, K., Seki, M., Komiya, H., and Benno, Y.<\/strong> 2009. <em>Parabacteroides gordonii<\/em> sp. nov., isolated from human blood cultures. Int. J. Syst. Evol. Microbiol. <strong>59:<\/strong> 2843-2847. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19628614?dopt=Abstract\">19628614<\/a>.<\/p>\n<p><strong>Sakamoto, M., Siqueira, J. F., Jr., R&#244;&#231;as, I. N., and Benno, Y.<\/strong> 2009. Diversity of spirochetes in endodontic infections. J. Clin. Microbiol. <strong>47:<\/strong> 1352-1357. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19261792?dopt=Abstract\">19261792<\/a>.<\/p>\n<p><strong>Mayanagi, G., Kimura, M., Nakaya, S., Hirata, H., Sakamoto, M., Benno, Y., and Shimauchi, H.<\/strong> 2009. Probiotic effects of orally administered <em>Lactobacillus salivarius<\/em> WB21-containing tablets on periodontopathic bacteria: a double-blinded, placebo-controlled, randomized clinical trial. J. Clin. Periodontol. <strong>36:<\/strong> 506-513. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19453574?dopt=Abstract\">19453574<\/a>.<\/p>\n<p><strong>Yang, X., Sugita, T., Takashima, M., Hiruma, M., Li, R., Sudo, H., Ogawa, H., and Ikeda, S.<\/strong> 2009. Differentiation of <em>Trichophyton rubrum<\/em> clinical isolates from Japanese and Chinese patients by randomly amplified polymorphic DNA and DNA sequence analysis of the non-transcribed spacer region of the rRNA gene. J. Dermatol. Sci. <strong>54:<\/strong> 38-42. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19162448?dopt=Abstract\">19162448<\/a>.<\/p>\n<p><strong>Li, B., Furihata, K., Kudo, T., and Yokota, A.<\/strong> 2009. <em>Kitasatospora saccharophila<\/em> sp. nov. and <em>Kitasatospora kazusanensis<\/em> sp. nov., isolated from soil and transfer of <em>Streptomyces atroaurantiacus<\/em> to the genus <em>Kitasatospora<\/em> as <em>Kitasatospora atroaurantiaca<\/em> comb. nov. J. Gen. Appl. Microbiol. <strong>55:<\/strong> 19-26. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19282629?dopt=Abstract\">19282629<\/a>.<\/p>\n<p><strong>Hamana, K., Hayashi, H., Niitsu, M., and Itoh, T.<\/strong> 2009. Polyamine analysis of thermophilic, acidophilic, alkaliphilic and radio-tolerant bacteria belonging to the domain <em>Bacteria<\/em> and methanogens, thermophiles and extreme halophiles belonging to the domain <em>Archaea<\/em> -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles IV-. J. Jpn. Soc. Extremophiles <strong>8:<\/strong> 59-68. DOI: <a href=\"https:\/\/doi.org\/10.3118\/jjse.8.59\">10.3118\/jjse.8.59<\/a>.<\/p>\n<p><strong>Sugiyama, Y., Ito, Y., Suzuki, M., and Hirota, A.<\/strong> 2009. Indole derivatives from a marine sponge-derived yeast as DPPH radical scavengers. J. Nat. Prod. <strong>72:<\/strong> 2069-2071. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19943625?dopt=Abstract\">19943625<\/a>.<\/p>\n<p><strong>Matsumoto, M., Sakamoto, M., and Benno, Y.<\/strong> 2009. Dynamics of fecal microbiota in hospitalized elderly fed probiotic LKM512 yogurt. Microbiol. Immunol. <strong>53:<\/strong> 421-432. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19659926?dopt=Abstract\">19659926<\/a>.<\/p>\n<p><strong>Noda, S., Mantini, C., Bordereau, C., Kitade, O., Dolan, M. F., Viscogliosi, E., and Ohkuma, M.<\/strong> 2009. Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution. Mol. Phylogenet. Evol. <strong>52:<\/strong> 217-224. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19306937?dopt=Abstract\">19306937<\/a>.<\/p>\n<p><strong>Yoshinari, S., Shiba, T., Inaoka, D., Itoh, T., Kurisu, G., Harada, S., Kita, K., and Watanabe, Y.<\/strong> 2009. Functional importance of Crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease. Nucleic Acids Res. <strong>37:<\/strong> 4787-4798. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19515941?dopt=Abstract\">19515941<\/a>.<\/p>\n<p><strong>Mantini, C., Dalia-Cornette, J., Noda, S., Van, Der, Heijden, H. M. J. F., Capron, M., Dei-Cas, E., Landman, W. J. M., Ohkuma, M., and Viscogliosi, E.<\/strong> 2009. Molecular identification and phylogenetic relationships of trichomonad isolates of galliform birds inferred from nuclear small subunit rRNA gene sequences. Parasitol. Res. <strong>106:<\/strong> 163-170. PMID: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19806364?dopt=Abstract\">19806364<\/a>.<\/p>\n<p><strong>Atsumi, H., Yoshimoto, K., Saito, S., Ohkuma, M., Maeda, M., and Nagasaki, Y.<\/strong> 2009. Luminescence-based colorimetric discrimination of single-nucleotide transversions by the combined use of the derivatives of DOTA-conjugated naphthyridine and its terbium complex. Tetrahedron Lett. <strong>50:<\/strong> 2177-2180. DOI: <a href=\"https:\/\/doi.org\/10.1016\/j.tetlet.2009.02.152\">10.1016\/j.tetlet.2009.02.152<\/a>.<\/p>\n<p><strong>Promnuan, Y., Kudo, T., and Chantawannakul, P.<\/strong> 2009. Actinomycetes isolated from beehives in Thailand. World J. Microbiol. Biotechnol. <strong>25:<\/strong> 1685-1689. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s11274-009-0051-1\">10.1007\/s11274-009-0051-1<\/a>.<\/p>\n<p><strong>Okada, G.<\/strong> 2009. Online manuscript submission for Mycoscience using Editorial Manager. Mycoscience <strong>50:<\/strong> 83. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10267-009-0465-5\">10.1007\/s10267-009-0465-5<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2008\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tbody>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2007\">2007<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"6\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2008<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Ozutsumi, Y., Sakamoto, M., Itabashi, H., and Benno, Y.<\/strong> 2008. Effect of ruminal protozoa on fecal microbiota in cattle using terminal restriction fragment length polymorphism. Anim. Sci. J. <strong>79:<\/strong> 29-34. DOI: <a href=\"https:\/\/doi.org\/10.1111\/j.1740-0929.2007.00494.x\">10.1111\/j.1740-0929.2007.00494.x<\/a>.<\/p>\n<p><strong>Endoh, R., Suzuki, M., and Benno, Y.<\/strong> 2008. <em>Ambrosiozyma kamigamensis<\/em> sp. nov. and <em>A. neoplatypodis<\/em> sp. nov., two new ascomycetous yeasts from ambrosia beetle galleries. Antonie van Leeuwenhoek <strong>94:<\/strong> 365-376. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18516700?dopt=Abstract\">18516700<\/a>.<\/p>\n<p><strong>Endoh, R., Suzuki, M., Benno, Y., and Futai, K.<\/strong> 2008. <em>Candida kashinagacola<\/em> sp. nov., <em>C. pseudovanderkliftii<\/em> sp. nov. and <em>C. vanderkliftii<\/em> sp. nov., three new yeasts from ambrosia beetle-associated sources. Antonie van Leeuwenhoek <strong>94:<\/strong> 389-402. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18537038?dopt=Abstract\">18537038<\/a>.<\/p>\n<p><strong>Odamaki, T., Xiao, J.-Z., Sakamaoto, M., Kondo, S., Yaesima, T., Iwatsuki, K., Togashi, H., Enomoto, T., and Benno, Y.<\/strong> 2008. Distribution of different species of the <em>Bacteroides fragilis<\/em> group in individuals with Japanese cedar pollinosis. Appl. Environ. Microbiol. <strong>74:<\/strong>  6814-6817. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18791010?dopt=Abstract\">18791010<\/a>.<\/p>\n<p><strong>Suezawa, Y., Suzuki, M., and Mori, H.<\/strong> 2008. Genotyping of a miso and soy sauce fermentation yeast, <em>Zygosaccharomyces rouxii<\/em>, based on sequence analysis of the partial 26S ribosomal RNA gene and two internal transcribed spacers. Biosci. Biotechnol. Biochem. <strong>72:<\/strong> 2452-2455. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18776675?dopt=Abstract\">18776675<\/a>.<\/p>\n<p><strong>Enache, M., Itoh, T., Kamekura, M., Popescu, G., and Dumitru, L.<\/strong> 2008. Halophilic archaea isolated from man-made young (200 years) salt lakes in Slanic, Prahova, Romania. Cent. Eur. J. Biol. <strong>3:<\/strong> 388-395. DOI: <a href=\"https:\/\/doi.org\/10.2478\/s11535-008-0034-5\">10.2478\/s11535-008-0034-5<\/a>.<\/p>\n<p><strong>Seifert, K. A., Rehner, Stephen. A., Sugita, T., and Okada, G.<\/strong> 2008. <em>Spicellum ovalisporum<\/em> Seifert &amp; Rehner, sp. nov. Fungal Planet <strong>28:<\/strong> 1-4.<\/p>\n<p><strong>Bakir, M. A., Kudo, T., and Benno, Y.<\/strong> 2008. <em>Microbacterium hatanonis<\/em> sp. nov., isolated as a contaminant of hairspray. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 654-658. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18319473?dopt=Abstract\">18319473<\/a>.<\/p>\n<p><strong>Jongrungruangchok, S., Tanasupawat, S., and Kudo, T.<\/strong> 2008. <em>Micromonospora chaiyaphumensis<\/em> sp. nov., isolated from Thai soils. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 924-928. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18398196?dopt=Abstract\">18398196<\/a>.<\/p>\n<p><strong>Maruo, T., Sakamoto, M., Ito, C., Toda, T., and Benno, Y.<\/strong> 2008. <em>Adlercreutzia equolifaciens<\/em> gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus <em>Eggerthella<\/em>. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 1221-1227. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18450717?dopt=Abstract\">18450717<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., and Kudo, T.<\/strong>  2008. <em>Micromonospora pattaloongensis<\/em> sp. nov., isolated from a Thai mangrove forest. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 1516-1521. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18599686?dopt=Abstract\">18599686<\/a>.<\/p>\n<p><strong>Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., &#332;mura, S., and Takahashi, Y.<\/strong>  2008. <em>Pseudosporangium ferrugineum<\/em> gen. nov., sp. nov., a new member of the family <em>Micromonosporaceae<\/em>. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 1644-1652. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18599710?dopt=Abstract\">18599710<\/a>.<\/p>\n<p><strong>Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., &#332;mura, S., and Takahashi, Y.<\/strong>  2008. <em>Actinomadura bangladeshensis<\/em> sp. nov. and <em>Actinomadura chokoriensis<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 1653-1659. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18599711?dopt=Abstract\">18599711<\/a>.<\/p>\n<p><strong>Ara, I., Bakir, M. A., and Kudo, T.<\/strong> 2008. Transfer of <em>Catellatospora koreensis<\/em> Lee <em>et al.<\/em> 2000 as <em>Catelliglobosispora koreensis<\/em> gen. nov., comb. nov. and <em>Catellatospora tsunoense<\/em> Asano <em>et al.<\/em> 1989 as <em>Hamadaea tsunoensis<\/em> gen. nov., comb. nov., and emended description of the genus <em>Catellatospora<\/em> Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 1950-1960. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18676486?dopt=Abstract\">18676486<\/a>.<\/p>\n<p><strong>Yachai, M., Tanasupawat, S., Itoh, T., Benjkul, S., Visessanguan, W., and Valyasevi, R.<\/strong> 2008. <em>Halobacterium piscisalsi<\/em> sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 2136-2140. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18768619?dopt=Abstract\">18768619<\/a>.<\/p>\n<p><strong>Tapingkae, W., Tanasupawat, S., Itoh, T., Parkin, K. L., Benjakul, S., Visessanguan, W., and Valyasevi, R.<\/strong> 2008. <em>Natrinema gari<\/em> sp. nov., a halophilic archaeon isolated from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. <strong>58:<\/strong> 2378-2383. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18842859?dopt=Abstract\">18842859<\/a>.<\/p>\n<p><strong>Jongrungruangchok, S., Tanasupawat, S., and Kudo, T.<\/strong> 2008. <em>Micromonospora krabiensis<\/em> sp. nov., isolated from marine soil in Thailand. J. Gen. Appl. Microbiol. <strong>54:<\/strong> 127-133. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18497487?dopt=Abstract\">18497487<\/a>.<\/p>\n<p><strong>Endoh, R., Suzuki, M., and Benno, Y.<\/strong> 2008. <em>Pichia rarassimilans<\/em> sp. nov., a novel yeast species isolated from body surface of the ambrosia beetle <em>Platypus quercivorus<\/em>. J. Gen. Appl. Microbiol. <strong>54:<\/strong> 181-186. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18654040?dopt=Abstract\">18654040<\/a>.<\/p>\n<p><strong>Hamana, K., Itoh, T., Benno, Y., and Hayashi, H.<\/strong> 2008. Polyamine distribution profiles of new members of the phylum <em>Bacteroides<\/em>. J. Gen. Appl. Microbiol. <strong>54:<\/strong> 229-236. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18802322?dopt=Abstract\">18802322<\/a>.<\/p>\n<p><strong>Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Omura, S., and Takahashi, Y.<\/strong> 2008. <em>Actinomadura maheshkhaliensis<\/em> sp. nov., a novel actinomycete isolated from mangrove rhizosphere soil of Maheshkhali, Bangladesh. J. Gen. Appl. Microbiol. <strong>54:<\/strong> 335-342. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19164876?dopt=Abstract\">19164876<\/a>.<\/p>\n<p><strong>Hamana, K., Hosoya, R., Yokota, A., Niitsu, M., Hayashi, H., and Itoh, T.<\/strong> 2008. Distribution of long linear and branched polyamines in the thermophiles belonging to the domain <em>Bacteria<\/em>. J. Jpn. Soc. Extremophiles <strong>7:<\/strong> 10-20. DOI: <a href=\"https:\/\/doi.org\/10.3118\/jjse.7.1.10\">10.3118\/jjse.7.1.10<\/a>.<\/p>\n<p><strong>Hamana, K., Hosoya, R., Niitsu, M., Hayashi, H., and Itoh, T.<\/strong> 2008. Temperature and salt dependent long linear and branched polyamine syntheses in the thermophiles belonging to the domain <em>Archaea<\/em>. J. Jpn. Soc. Extremophiles <strong>7:<\/strong> 21-27. DOI: <a href=\"https:\/\/doi.org\/10.3118\/jjse.7.1.21\">10.3118\/jjse.7.1.21<\/a>.<\/p>\n<p><strong>Ionata, E., Canganella, F., Bianconi, G., Benno, Y., Sakamoto, M., Capasso, A., Rossi, M., and La, Cara, F.<\/strong> 2008. A novel keratinase from <em>Clostridium sporogenes<\/em> bv. pennavorans bv. nov., a thermotolerant organism isolated from solfataric muds. Microbiol. Res. <strong>163:<\/strong> 105-112. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17085026?dopt=Abstract\">17085026<\/a>.<\/p>\n<p><strong>Sakamoto, M., Siqueira, J. F., Jr., R&#244;&#231;as, I. N., and Benno,Y.<\/strong> 2008. Molecular analysis of the root canal microbiota associated with endodontic treatment failures. Oral Microbiol. Immunol. <strong>23:<\/strong> 275-281. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18582326?dopt=Abstract\">18582326<\/a>.<\/p>\n<p><strong>Crous, P. W., Wood, A. R., Okada, G., and Groenewald, J. Z.<\/strong> 2008. Foliicolous microfungi occurring on <em>Encephalartos<\/em>. Persoonia <strong>21:<\/strong> 135-146. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20396583?dopt=Abstract\">20396583<\/a>.<\/p>\n<p><strong>Enache, M., Itoh, T., Kamekura, M., Popescu, G., and Dumitru, L.<\/strong> 2008. Halophilic archaea of <em>Haloferax<\/em> genus isolated from anthropocentric Telega (Palada) salt lake. Proc. Rom. Acad. Ser. B <strong>10:<\/strong> 11-16. <a href=\"https:\/\/pdfs.semanticscholar.org\/aa9d\/a71e4ca49df655a9b8dd40929af76f3a5174.pdf?_ga=2.269207989.598728480.1568337852-25797303.1568337852\">PDF<\/a>.<\/p>\n<p><strong>Harada, A., Ohkusa, T., Kushima, K., Sakamoto, M., Benno, Y., Beppu, K., Shibuya, T., Sakamoto, N., and Watanabe, S.<\/strong> 2008. Identification of bacteria from blood in febrile patients with ulcerative colitis by terminal restriction fragment length polymorphism profile analysis of 16S rRNA gene. Scad. J. Gastroenterol. <strong>43:<\/strong> 423-430. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18365907?dopt=Abstract\">18365907<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2007\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2006\">2006<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2007<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Ara, I. and Kudo, T.<\/strong> 2007. <em>Krasilnikovia<\/em> gen. nov., a new member of the family <em>Micromonosporaceae<\/em> and description of <em>Krasilnikovia cinnamonea<\/em> sp. nov. Actinomycetologica <strong>21:<\/strong> 1-10. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.SAJ210101\">10.3209\/saj.SAJ210101<\/a>.<\/p>\n<p><strong>Ara, I. and Kudo, T.<\/strong> 2007. <em>Sphaerosporangium<\/em> gen. nov., a new member of the family <em>Streptosporangiaceae<\/em>, with descriptions of three new species as <em>Sphaerosporangium melleum<\/em> sp. nov., <em>Sphaerosporangium rubeum<\/em> sp. nov. and <em>Sphaerosporangium cinnabarinum<\/em> sp. nov., and transfer of <em>Streptosporangium viridialbum<\/em> Nonomura and Ohara 1960 to <em>Sphaerosporangium viridialbum<\/em> comb. nov. Actinomycetologica <strong>21:<\/strong> 11-21. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.SAJ210102\">10.3209\/saj.SAJ210102<\/a>.<\/p>\n<p><strong>Matsumoto, M., Aranami, A., Ishige, A., Watanabe, K., and Benno, Y.<\/strong> 2007. LKM512 yogurt consumption improves the intestinal environment and induces the T-helper type 1 cytokine in adult patients with intractable atopic dermatitis. Clin. Exp. Allergy <strong>37:<\/strong> 358-370. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17359386?dopt=Abstract\">17359386<\/a>.<\/p>\n<p><strong>Matsumoto, M., Hara, K., and Benno, Y.<\/strong> 2007. The influence of the immunostimulation by bacterial cell components derived from altered large intestinal microbiota on probiotic anti-inflammatory benefits. FEMS Immunol. Med. Microbiol. <strong>49:<\/strong> 387-390. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17378901?dopt=Abstract\">17378901<\/a>.<\/p>\n<p><strong>Sakamoto, M., Kitahara, M., and Benno, Y.<\/strong> 2007. <em>Parabacteroides johnsonii<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 293-296. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17267966?dopt=Abstract\">17267966<\/a>.<\/p>\n<p><strong>Sakamoto, M., Lan, P. T. N., and Benno, Y.<\/strong> 2007. <em>Barnesiella viscericola<\/em> gen. nov., sp. nov., a novel member of the family <em>Porphyromonadaceae<\/em> isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 342-346. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17267976?dopt=Abstract\">17267976<\/a>.<\/p>\n<p><strong>Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T.<\/strong> 2007. <em>Lentibacillus kapialis<\/em> sp. nov., from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 364-369. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17267980?dopt=Abstract\">17267980<\/a>.<\/p>\n<p><strong>Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Li, Z., Jensen, G., Rodriguez-Valera, F., Bolhuis, H., and Dyall-Smith, M. L.<\/strong> 2007. <em>Haloquadratum walsbyi<\/em> gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 387-392. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17267984?dopt=Abstract\">17267984<\/a>.<\/p>\n<p><strong>Enache, M., Itoh, T., Kamekura, M., Teodosiu, G., and Dumitru, L.<\/strong> 2007. <em>Haloferax prahovense<\/em> sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 393-397. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17267985?dopt=Abstract\">17267985<\/a>.<\/p>\n<p><strong>Hayashi, H., Shibata, K., Sakamoto, M., Tomita, S., and Benno, Y.<\/strong> 2007. <em>Prevotella copri<\/em> sp. nov. and <em>Prevotella stercorea<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 941-946. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17473237?dopt=Abstract\">17473237<\/a>.<\/p>\n<p><strong>Hayashi, H., Shibata, K., Bakir, M. A., Sakamoto, M., Tomita, S., and Benno, Y.<\/strong> 2007. <em>Bacteroides coprophilus<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1323-1326. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17551051?dopt=Abstract\">17551051<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Namwong, S., Kudo, T., and Itoh, T.<\/strong> 2007. <em>Piscibacillus salipiscarius<\/em> gen. nov., sp. nov., a moderately halophilic bacterium from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1413-1417. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17625167?dopt=Abstract\">17625167<\/a>.<\/p>\n<p><strong>Aizawa, T., Ve, N. B., Kimoto, K., Iwabuchi, N., Sumida, H., Hasegawa, I., Sasaki, S., Tamura, T., Kudo, T., Suzuki, K., Nakajima, M., and Sunairi, M.<\/strong> 2007. <em>Curtobacterium ammoniigenes<\/em> sp. nov., an ammonia-producing bacterium isolated from plants inhabiting acidic swamps in actual acid sulfate soil areas of Vietnam. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1447-1452. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17625173?dopt=Abstract\">17625173<\/a>.<\/p>\n<p><strong>Hoshino, Y., Watanabe, K., Iida, S., Suzuki, S., Kudo, T., Kogure, T., Yazawa, K., Ishikawa, J., Kroppenstedt, R. M., and Mikami, Y.<\/strong> 2007. <em>Nocardia terpenica<\/em> sp. nov., isolated from Japanese patients with nocardiosis. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1456-1460. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17625175?dopt=Abstract\">17625175<\/a>.<\/p>\n<p><strong>Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y., and Omura, S.<\/strong> 2007. <em>Nonomuraea bangladeshensis<\/em> sp. nov. and <em>Nonomuraea coxensis<\/em> sp. nov. Int J Syst. Evol. Microbiol. <strong>57:<\/strong> 1504-1509. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17625184?dopt=Abstract\">17625184<\/a>.<\/p>\n<p><strong>Pikuta, E. V., Marsic, D., Itoh, T., Bej, A. K., Tang, J., Whitman, W. B., Ng, J. D., Garriott, O. K., and Hoover, R. B.<\/strong> 2007. <em>Thermococcus thioreducens<\/em> sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1612-1618. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17625204?dopt=Abstract\">17625204<\/a>.<\/p>\n<p><strong>Sakamoto, M., Ohkusu, K., Masaki, T., Kako, H., Ezaki, T., and Benno, Y.<\/strong> 2007. <em>Prevotella pleuritidis<\/em> sp. nov., isolated from pleural fluid. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 1725-1728. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17684245?dopt=Abstract\">17684245<\/a>.<\/p>\n<p><strong>Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T.<\/strong> 2007. <em>Salinicoccus siamensis<\/em> sp. nov., isolated from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 2004-2008. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17766863?dopt=Abstract\">17766863<\/a>.<\/p>\n<p><strong>Namwong, S., Tanasupawat, S., Visessanguan, W., Kudo, T., and Itoh, T.<\/strong> 2007. <em>Halococcus thailandensis<\/em> sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 2199-2203. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17911282?dopt=Abstract\">17911282<\/a>.<\/p>\n<p><strong>Enache, M., Itoh, T., Fukushima, T., Usami, R., Dumitru, L., and Kamekura, M.<\/strong> 2007. Phylogenetic relationships within the family <em>Halobacteriaceae<\/em> inferred from <em>rpoB<\/em>&#8216; gene and protein sequences. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 2289-2295. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17911299?dopt=Abstract\">17911299<\/a>.<\/p>\n<p><strong>Itoh, T., Yoshikawa, N., and Takashina, T.<\/strong> 2007. <em>Thermogymnomonas acidicola<\/em> gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less archaeon in the order <em>Thermoplasmatales<\/em>, isolated from a solfataric soil in Hakone, Japan. Int. J. Syst. Evol. Microbiol. <strong>57:<\/strong> 2557-2561. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17978217?dopt=Abstract\">17978217<\/a>.<\/p>\n<p><strong>Ishiko, A., Dekio, I., Fujimoto, A., Kameyama, K., Sakamoto, M., Benno, Y., Amagai, M., and Nishikawa, T.<\/strong> 2007. Abnormal keratin expression in circumscribed palmar hypokeratosis. J. Am. Acad. Dermatol. <strong>57:<\/strong> 285-291. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17553594?dopt=Abstract\">17553594<\/a>.<\/p>\n<p><strong>Ara, I. and Kudo, T.<\/strong> 2007. Two new species of the genus <em>Micromonospora<\/em>: <em>Micromonospora chokoriensis<\/em> sp. nov. and <em>Micromonospora coxensis<\/em> sp. nov., isolated from sandy soil. J. Gen. Appl. Microbiol. <strong>53:<\/strong> 29-37. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17429159?dopt=Abstract\">17429159<\/a>.<\/p>\n<p><strong>Ara, I. and Kudo, T.<\/strong> 2007. <em>Luedemannella<\/em> gen. nov., a new member of the family <em>Micromonosporaceae<\/em> and description of <em>Luedemannella helvata<\/em> sp. nov. and <em>Luedemannella flava<\/em> sp. nov. J. Gen. Appl. Microbiol. <strong>53:<\/strong> 39-51. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17429160?dopt=Abstract\">17429160<\/a>.<\/p>\n<p><strong>Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y., and Omura, S.<\/strong> 2007. <em>Nonomuraea maheshkhaliensis<\/em> sp. nov., a novel actinomycete isolated from mangrove rhizosphere mud. J. Gen. Appl. Microbiol. <strong>53:<\/strong> 159-166. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17726296?dopt=Abstract\">17726296<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Suwanborirux, K., Itoh, T., and Kudo, T.<\/strong> 2007. <em>Micromonospora narathiwatensis<\/em> sp. nov., from Thai peat swamp forest soils. J. Gen. Appl. Microbiol. <strong>53:<\/strong> 287-293. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18057819?dopt=Abstract\">18057819<\/a>.<\/p>\n<p><strong>Odamaki, T., Xiao, J.-Z., Iwabuchi, N., Sakamoto. M., Takahashi, N., Kondo, S., Iwatsuki, K., Kokubo, S., Togashi, H., Enomoto, T., and Benno, Y.<\/strong> 2007. Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intake. J. Investig. Allergol. Clin. Immunol. <strong>17:<\/strong> 92-100. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17460947?dopt=Abstract\">17460947<\/a>.<\/p>\n<p><strong>Hamana, K., Hosoya, R., and Itoh, T.<\/strong> 2007. Polyamine analysis of methanogens, thermophiles and extreme halophiles belonging to the domain Archaea. J. Jpn. Soc. Extremophiles <strong>6:<\/strong> 25-31. DOI: <a href=\"https:\/\/doi.org\/10.3118\/jjse.6.25\">10.3118\/jjse.6.25<\/a>.<\/p>\n<p><strong>Odamaki, T., Xiao, J.-Z., Iwabuchi, N., Sakamoto, M., Takahashi, N., Kondo, S., Miyaji, K., Iwatsuki, K., Togashi, H., Enomoto, T., and Benno, Y.<\/strong> 2007. Influence of <em>Bifidobacterium longum<\/em> BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen season. J. Med. Microbiol. <strong>56:<\/strong> 1301-1308. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17893165?dopt=Abstract\">17893165<\/a>.<\/p>\n<p><strong>Dekio, I., Sakamoto. M., Hayashi, H., Amagai, M., Suematsu, M., and Benno, Y.<\/strong> 2007. Characterization of skin microbiota in patients with atopic dermatitis and in normal subjects using 16S rRNA gene-based comprehensive analysis. J. Med. Microbiol. <strong>56:<\/strong> 1675-1683. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18033838?dopt=Abstract\">18033838<\/a>.<\/p>\n<p><strong>Nakayama, H., Shimamura, T., Imagawa, T., Shirai, N., Itoh, T., Sako, Y., Miyano, M., Sakuraba, H., Ohshima, T., Nomura, N., and Tsuge, H.<\/strong> 2007. Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability. J. Mol. Biol. <strong>365:<\/strong> 362-378. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17069851?dopt=Abstract\">17069851<\/a>.<\/p>\n<p><strong>Hasegawa, H., Sakamoto, M., and Benno, Y.<\/strong> 2007. <em>Bacteroides uniformis<\/em> as the dominant bacterial species involved in activation of ginseng protopanaxadial saponins in human intestines. J. Trad. Med. <strong>24:<\/strong> 140-143. DOI: <a href=\"https:\/\/doi.org\/10.11339\/jtm.24.140\">10.11339\/jtm.24.140<\/a>.<\/p>\n<p><strong>Kajikazawa, T., Sugita, T., Takashima, M., and Nishikawa, A.<\/strong> 2007. Detection of pathogenic yeasts from processed fresh edible sea urchins sold in a fish market. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) <strong>48:<\/strong> 169-172. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17975532?dopt=Abstract\">17975532<\/a>.<\/p>\n<p><strong>Matsumoto, M. and Benno, Y.<\/strong> 2007. The relationship between microbiota and polyamine concentration in the human intestine: a pilot study. Microbiol. Immunol. <strong>51:<\/strong> 25-35. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17237596?dopt=Abstract\">17237596<\/a>.<\/p>\n<p><strong>Matsumoto, M., Kakizoe, K., and Benno, Y.<\/strong> 2007. Comparison of fecal microbiota and polyamine concentration in adult patients with intractable atopic dermatitis and healthy adults. Microbiol. Immunol. <strong>51:<\/strong> 37-46. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17237597?dopt=Abstract\">17237597<\/a>.<\/p>\n<p><strong>Kibe, R., Sakamoto, M., Yokota, H., and Benno, Y.<\/strong> 2007. Characterization of the inhabitancy of mouse intestinal bacteria (MIB) in rodents and humans by real-time PCR with group-specific primers. Microbiol. Immunol. <strong>51:<\/strong> 349-357. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17446674?dopt=Abstract\">17446674<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Sano, A., Nishimura, K., Kinebuchi, T., Yamaguchi, S., and Osanai, H.<\/strong> 2007. <em>Cryptococcus arboriformis<\/em> sp. nov., a novel anamorphic basidiomycetous yeast species isolated from a patient&#8217;s urine. Microbiol. Immunol. <strong>51:<\/strong> 543-545. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17579264?dopt=Abstract\">17579264<\/a>.<\/p>\n<p><strong>Okamoto, M., Benno, Y., Leung, K. P., and Maeda, N.<\/strong> 2007. <em>Metascardovia criceti<\/em> gen. nov. sp. nov., from hamster dental plaque. Microbiol. Immunol. <strong>51:<\/strong> 747-754. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17704637?dopt=Abstract\">17704637<\/a>.<\/p>\n<p><strong>Sakamoto, M., Siqueira, J. F., Jr., R&#244;&#231;as, I. N., and Benno, Y.<\/strong> 2007. Bacterial reduction and persistence after endodontic treatment procedures. Oral Microbiol. Immunol. <strong>22:<\/strong> 19-23. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17241166?dopt=Abstract\">17241166<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2006\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2005\">2005<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2006<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Jongrungruangchok, S., Tanasupawat, S., Kitakoop, P., Bavovada, R., Kobayashi, H., and Kudo, T.<\/strong> 2006. Identification of <em>Streptomyces<\/em> and <em>Kitasatospora<\/em> strains from Thai soils with geldanamycin production strain. Actinomycetologica <strong>20:<\/strong> 10-14. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.20.10\">10.3209\/saj.20.10<\/a>.<\/p>\n<p><strong>Nakanishi, Y., Murashima, K., Ohara, H., Suzuki, T., Hayashi, H., Sakamoto, M., Fukasawa, T., Kubota, H., Hosono, A., Kono, T., Kaminogawa, S., and Benno, Y.<\/strong> 2006. Increase in terminal restriction fragments of <em>Bacteroidetes<\/em>-derived 16S rRNA genes after administration of short-chain fructooligosaccharides. Appl. Environ. Microbiol. <strong>72:<\/strong> 6271-6276. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16957254?dopt=Abstract\">16957254<\/a>.<\/p>\n<p><strong>Salminen, S., Benno, Y., and de Vos, W. M.<\/strong> 2006. International colonisation, microbiota, and future probiotics? Asia. Pac. J. Clin. Nutr. <strong>15:<\/strong> 558-562. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17077076?dopt=Abstract\">17077076<\/a>.<\/p>\n<p><strong>Yoshinari, S., Itoh, T., Hallam, S. J., DeLong, E. F., Yokobori, S., Yamagishi, A., Oshima, T., Kita, K., and Watanabe, Y.<\/strong> 2006. Archaeal pre-mRNA splicing: A connection to hetero-oligomeric splicing endonuclease. Biochem. Biophys. Res. Commun. <strong>346:<\/strong> 1024-1032. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16781672?dopt=Abstract\">16781672<\/a>.<\/p>\n<p><strong>Hashimoto, K., Kawasaki, H., Akazawa, K., Nakamura, J., Asakura, Y., Kudo, T., Sakuradani, E., Shimizu, S., and Nakamatsu, T.<\/strong> 2006. Changes in composition and content of mycolic acids in glutamate-overproducing <em>Corynebacterium glutamicum<\/em>. Biosci. Biotechnol. Biochem. <strong>70:<\/strong> 22-30. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16428817?dopt=Abstract\">16428817<\/a>.<\/p>\n<p><strong>Suezawa, Y., Kimura, I., Inoue, M., Gohda, N., and Suzuki, M.<\/strong> 2006. Identification and typing of miso and soy sauce fermentation yeasts, Candida etchellsii and C. versatilis, based on sequence analyses of the D1D2 domain of the 26S ribosomal RNA gene, and the region of internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2. Biosci. Biotechnol. Biochem. <strong>70:<\/strong> 348-354. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16495649?dopt=Abstract\">16495649<\/a>.<\/p>\n<p><strong>Matsumoto, M. and Benno, Y.<\/strong> 2006. Anti-inflammatory metabolite production in the gut from the consumption of probiotic yogurt containing <em>Bifidobacterium animalis<\/em> subsp. <em>lactis<\/em> LKM512. Biosci. Biotechnol. Biochem. <strong>70:<\/strong> 1287-1292. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16794305?dopt=Abstract\">16794305<\/a>.<\/p>\n<p><strong>Hayashi, H., Sakamoto, M., Kitahara, M., and Benno, Y.<\/strong> 2006. Diversity of the <em>Clostridium coccoides<\/em> group in human fecal microbiota as determined by 16S rRNA gene library. FEMS Microbiol. Lett. <strong>257:<\/strong> 202-207. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16553854?dopt=Abstract\">16553854<\/a>.<\/p>\n<p><strong>Tomita, S., Shirasaki, N., Matsuyama, J., Benno, Y., and Kiyosawa, I.<\/strong> 2006. Growth behavior of <em>Clostridium perfringens<\/em> cells aggregated by bovine lactoferrin in the presence of lipoteichoic acid. Food Preserv. Sci. <strong>32:<\/strong> 85-89. DOI: <a href=\"https:\/\/doi.org\/10.5891\/jafps.32.3_85\">10.5891\/jafps.32.3_85<\/a>.<\/p>\n<p><strong>Maruo, T., Sakamoto, M., Toda, T., and Benno, Y.<\/strong> 2006. Monitoring the cell number of <em>Lactococcus lactis<\/em> subsp. <em>cremoris<\/em> FC in human feces by real-time PCR with strain-specific primers designed using the RAPD technique. Int. J. Food Microbiol. <strong>110:<\/strong> 69-76. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16737755?dopt=Abstract\">16737755<\/a>.<\/p>\n<p><strong>Bakir, M. A., Kitahara, M., Sakamoto, M., Matsumoto, M., and Benno, Y.<\/strong> 2006. <em>Bacteroides intestinalis<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 151-154. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16403880?dopt=Abstract\">16403880<\/a>.<\/p>\n<p><strong>Ara, I. and Kudo, T.<\/strong> 2006. Three novel species of the genus <em>Catellatospora<\/em>, <em>Catellatospora chokoriensis<\/em> sp. nov., <em>Catellatospora coxensis<\/em> sp. nov. and <em>Catellatospora bangladeshensis<\/em> sp. nov., and transfer of <em>Catellatospora citrea<\/em> subsp. <em>methionotrophica<\/em> Asano and Kawamoto 1988 to <em>Catellatospora methionotrophica<\/em> sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 393-400. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16449446?dopt=Abstract\">16449446<\/a>.<\/p>\n<p><strong>Bakir, M. A., Kitahara, M., Sakamoto, M., Matsumoto, M., and Benno, Y.<\/strong> 2006. <em>Bacteroides finegoldii<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 931-935. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16627634?dopt=Abstract\">16627634<\/a>.<\/p>\n<p><strong>Sakamoto, M. and Benno, Y.<\/strong> 2006. Reclassification of <em>Bacteroides distasonis<\/em>, <em>Bacteroides goldsteinii<\/em> and <em>Bacteroides merdae<\/em> as <em>Parabacteroides distasonis<\/em> gen. nov., comb.nov., <em>Parabacteroides goldsteinii<\/em> comb. nov. and <em>Parabacteroides merdae<\/em> comb. nov. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 1599-1605. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16825636?dopt=Abstract\">16825636<\/a>.<\/p>\n<p><strong>Bakir, M. A., Sakamoto, M. Kitahara, M., Matsumoto, M., and Benno, Y.<\/strong> 2006. <em>Bacteroides dorei<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 1639-1643. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16825642?dopt=Abstract\">16825642<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Itoh, T., and Kudo, T.<\/strong> 2006. <em>Actinocatenispora thailandica<\/em> gen. nov., sp. nov., a new member of the family <em>Micromonosporaceae<\/em>. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 1789-1794. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16902009?dopt=Abstract\">16902009<\/a>.<\/p>\n<p><strong>Kageyama, A., Iida, S., Yazawa, K., Kudo, T., Suzuki, S., Koga, T., Saito, H., Inagawa, H., Wada, A., Kroppenstedt, R. M., and Mikami, Y.<\/strong> 2006. <em>Gordonia araii<\/em> sp. nov. and <em>Gordonia effusa<\/em> sp. nov., isolated from patients in Japan. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 1817-1821. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16902014?dopt=Abstract\">16902014<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Pakdeeto, A., Namwong, S., Thawai, C., Kudo, T., and Itoh, T.<\/strong> 2006. <em>Lentibacillus halophilus<\/em> sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 1859-1863. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16902021?dopt=Abstract\">16902021<\/a>.<\/p>\n<p><strong>Pikuta, E. V., Itoh, T., Krader, P., Tang, J., Whitman, W. B., and Hoover, R. B.<\/strong> 2006. <em>Anaerovirgula multivorans<\/em> gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 2623-2629. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17082402?dopt=Abstract\">17082402<\/a>.<\/p>\n<p><strong>Lan, P. T. N., Sakamoto, M., Sakata, S., and Benno, Y.<\/strong> 2006. <em>Bacteroides barnesiae<\/em> sp. nov., <em>Bacteroides salanitronis<\/em> sp. nov. and <em>Bacteroides gallinarum<\/em> sp. nov., isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. <strong>56:<\/strong> 2853-2859. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17158987?dopt=Abstract\">17158987<\/a>.<\/p>\n<p><strong>Degawa, Y., Shibanuma, K., and Benno, Y.<\/strong> 2006. The proliferation factors affecting the growth of intestinal bifidobacterium in the presence of corn-fiber components of containing hydrolyzed oligosaccharides. Int. J. Probiot. Prebiot. <strong>1:<\/strong> 203-212.<\/p>\n<p><strong>Asami, Y., Kakeya, H., Okada, G., Toi, M., and Osada, H.<\/strong> 2006. RK-95113, a new angiogenesis inhibitor produced by <em>Aspergillus fumigatus<\/em>. J. Antibiot. <strong>59:<\/strong> 724-728. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17256472?dopt=Abstract\">17256472<\/a>.<\/p>\n<p><strong>Fungsin, B., Takashima, M., Sugita, T., Artjariyasripong, S., Potacharoen, W., Tanticharoen, M., and Nakase, T.<\/strong> 2006. <em>Bullera koratensis<\/em> sp. nov. and <em>Bullera lagerstroemiae<\/em> sp. nov., two new ballistoconidium-forming yeast species in the Trichosporonales clade isolated from plant leaves in Thailand. J. Gen. Appl. Microbiol. <strong>52:<\/strong> 73-81. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16778350?dopt=Abstract\">16778350<\/a>.<\/p>\n<p><strong>Gueimonde, M., Sakata, S., Kalliomaki, M., Isolauri, E., Benno, Y., and Salminen, S.<\/strong> 2006. Effect of maternal consumption of <em>Lactobacillus<\/em> GG on transfer and establishment of fecal bifidobacterial microbiota in neonates. J. Pediatr. Gastroenterol. Nutr. <strong>42:<\/strong> 166-170. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16456409?dopt=Abstract\">16456409<\/a>.<\/p>\n<p><strong>Hasegawa, H. and Benno, Y.<\/strong> 2006. Clinical evaluation of probiotic <em>Lactobacillus paracasei<\/em> A221 for standardizing ginseng-hydrolyzing potentials of human intestinal bacteria. J. Trad. Med. <strong>23:<\/strong> 42-46. DOI: <a href=\"https:\/\/doi.org\/10.11339\/jtm.23.42\">10.11339\/jtm.23.42<\/a>.<\/p>\n<p><strong>Hosoya, R., Yokoyama, Y., Hamana, K., and Itoh, T.<\/strong> 2006. Polyamine analysis within the eubacterial thirteen phyla <em>Acidobacteria<\/em>, <em>Actinobacteria<\/em>, <em>Chlorobi<\/em>, <em>Chloroflexi<\/em>, <em>Chrysiogenetes<\/em>, <em>Deferribacteres<\/em>, <em>Fibrobacteres<\/em>, <em>Firmicutes<\/em>, <em>Fusobacteria<\/em>, <em>Gemmatimonadetes<\/em>, <em>Nitrospirae<\/em>, <em>Planctomycetes<\/em>, and <em>Verrucomicrobia<\/em>. Microbiol. Cult. Collect. <strong>22:<\/strong> 21-33. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No22_1\/22_1_21.pdf\">PDF<\/a>. <\/p>\n<p><strong>Sakata, S., Ryu, C. S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., and Benno, Y.<\/strong> 2006. Characterization of the genus <em>Bifidobacterium<\/em> by automated ribotyping and 16S rRNA gene sequences. Microbiol. Immunol. <strong>50:<\/strong> 1-10. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16428867?dopt=Abstract\">16428867<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Poonwan, N., and Mekha, N.<\/strong> 2006. <em>Candida pseudohaemulonii<\/em> sp. nov., an amphotericin B- and azole-resistant yeast species, isolated from the blood of a patient from Thailand. Microbiol. Immunol. <strong>50:<\/strong> 469-473. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16785719?dopt=Abstract\">16785719<\/a>.<\/p>\n<p><strong>Sakuma, K., Kitahara, M., Kibe, R., Sakamoto, M., and Benno, Y.<\/strong> 2006. <em>Clostridium glycyrrhizinilyticum<\/em> sp. nov., a glycyrrhizin-hydrolysing bacterium isolated from human faeces. Microbiol. Immunol. <strong>50:<\/strong> 481-485. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16858139?dopt=Abstract\">16858139<\/a>.<\/p>\n<p><strong>Takahashi, H., Fujita, T., Suzuki, Y., and Benno, Y.<\/strong> 2006. Monitoring and survival of <em>Lactobacillus gasseri<\/em> SBT2055 in the human intestinal tract. Microbiol. Immunol. <strong>50:<\/strong> 867-870. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17116981?dopt=Abstract\">17116981<\/a>.<\/p>\n<p><strong>Ibrahim, F., Salminen, S., Mykkanen, H., El-Nezami, H., Salminen, E., Ma, J., Ling, W. H., Benno, Y., and Tahvonen, R.<\/strong> 2006. Cadmium and lead elimination in young male chinese students a probiotic intervention study. Nutra foods <strong>5:<\/strong> 5-9.<\/p>\n<p><strong>Sakamoto, M., R&#244;&#231;as, I. N., Siqueira, J. F., Jr., and Benno, Y.<\/strong> 2006. Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. Oral Microbiol. Immunol. <strong>21:<\/strong> 112-122. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16476021?dopt=Abstract\">16476021<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2005\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2004\">2004<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2005<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Nomura, T., Ohkusa, T., Okayasu, I., Yoshida, T., Sakamoto, M., Hayashi, H., Benno, Y., Hirai, S., Hojo, M., Kobayashi, O., Terai, T., Miwa, H., Takei, Y., Ogihara, T., and Sato, N.<\/strong> 2005. Mucosa-associated bacteria in ulcerative colitis before and after antibiotic combination therapy. Aliment. Pharmacol. Ther.<strong> 21:<\/strong> 1017-1027. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15813838?dopt=Abstract\">15813838<\/a>.<\/p>\n<p><strong>Peter, G., Tornai-Lehoczki, J., Suzuki, M., and Dlauchy, D.<\/strong> 2005. <em>Metschnikowia viticola<\/em> sp. nov., a new yeast species from grape. Antonie van Leeuwenhoek <strong>87:<\/strong> 155-160. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15723177?dopt=Abstract\">15723177<\/a>.<\/p>\n<p><strong>Kibe, R., Sakamoto, M., Yokota, H., Ishikawa, H., Aiba, Y., Koga, Y., and Benno, Y.<\/strong> 2005. Movement and fixation of intestinal microbiota after administration of human feces to germfree mice. Appl. Environ. Microbiol. <strong>71:<\/strong> 3171-3178. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15933018?dopt=Abstract\">15933018<\/a>.<\/p>\n<p><strong>Ozutsumi, Y., Hayashi, H., Sakamoto, M., Itabashi, H., and Benno, Y.<\/strong> 2005. Culture-independent analysis of fecal microbiota in cattle. Biosci. Biotechnol. Biochem. <strong>69:<\/strong> 1793-1797. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16195605?dopt=Abstract\">16195605<\/a>.<\/p>\n<p><strong>Hayashi, H., Abe, T., Sakamoto, M., Ohara, H., Ikemura, T., Sakka, K., and Benno, Y.<\/strong> 2005. Direct cloning of genes encoding novel xylanases from the human gut. Can. J. Microbiol. <strong>51:<\/strong> 251-259. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15920623?dopt=Abstract\">15920623<\/a>.<\/p>\n<p><strong>Kurosawa, N., Itoh, Y. H., and Itoh, T.<\/strong> 2005. <em>Thermus kawarayensis<\/em> sp. nov., a new member of the genus <em>Thermus<\/em>, isolated from Japanese hot springs. Extremophiles <strong>9:<\/strong> 81-84. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15378402?dopt=Abstract\">15378402<\/a>.<\/p>\n<p><strong>Itoh, T., Yamaguchi, T., Zhou, P., and Takashina, T.<\/strong> 2005. <em>Natronolimnobius baerhuensis<\/em> gen. nov., sp. nov. and <em>Natronolimnobius innermongolicus<\/em> sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in lnner Mongolia, China. Extremophiles <strong>9:<\/strong> 111-116. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15841343?dopt=Abstract\">15841343<\/a>.<\/p>\n<p><strong>Sakata, S., Tonooka, T., Ishizaki, S., Takada, M., Sakamoto, M., Fukuyama, M., and Benno, Y.<\/strong> 2005. Culture-independent analysis of fecal microbiota in infants, with special reference to <em>Bifidobacterium<\/em> species. FEMS Microbiol. Lett. <strong>243:<\/strong> 417-423. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15686844?dopt=Abstract\">15686844<\/a>.<\/p>\n<p><strong>Namwong, S., Tanasupawat, S., Smitinont, T., Visessanguan, W., Kudo, T., and Itoh, T.<\/strong> 2005. Isolation of <em>Lentibacillus salicampi<\/em> strains and <em>Lentibacillus juripiscarius<\/em> sp. nov. from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 315-320. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15653893?dopt=Abstract\">15653893<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., Suzuki, K., and Kudo, T.<\/strong> 2005. <em>Micromonospora eburnea<\/em> sp. nov., isolated from a Thai peat swamp forest. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 417-422. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15653911?dopt=Abstract\">15653911<\/a>.<\/p>\n<p><strong>Sakamoto, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2005. <em>Prevotella multiformis<\/em> sp. nov., isolated from human subgingival plaque. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 815-819. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15774668?dopt=Abstract\">15774668<\/a>.<\/p>\n<p><strong>Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2005. <em>Prevotella multisaccharivorax<\/em> sp. nov., isolated from human subgingival plaque. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 1839-1843. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16166675?dopt=Abstract\">16166675<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakamoto, M., Ike, M., Sakata, S., and Benno, Y.<\/strong> 2005. <em>Bacteroides plebeius<\/em> sp. nov. and <em>Bacteroides coprocola<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 2143-2147. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16166722?dopt=Abstract\">16166722<\/a>.<\/p>\n<p><strong>Singla, A. K., Mayilraj, S., Kudo, T., Krishnamurthi, S., Prasad, G. S., and Vohra, R. M.<\/strong> 2005. <em>Actinoalloteichus spitiensis<\/em> sp. nov., a novel actinobacterium isolated from a cold desert of the Indian Himalayas. Int. J. Syst. Evol. Microbiol. <strong>55:<\/strong> 2561-2564. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16280527?dopt=Abstract\">16280527<\/a>.<\/p>\n<p><strong>Nakase, T., Lee, F., Am-in, S., Jindamorakot, S., Potacharoen, W., Tanticharoen, M., and Takashima, M.<\/strong> 2005. <em>Sporobolomyces fushanensis<\/em> sp. nov., a new species of ballistoconidium-forming yeast in the Microbotryum lineage isolated from a plant in Taiwan. J. Gen. Appl. Microbiol. <strong>51:<\/strong> 41-45. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15864760?dopt=Abstract\">15864760<\/a>.<\/p>\n<p><strong>Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T.<\/strong> 2005. <em>Micromonospora siamensis<\/em> sp. nov., isolated from Thai peat swamp forest. J. Gen. Appl. Microbiol. <strong>51:<\/strong> 229-234. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16205030?dopt=Abstract\">16205030<\/a>.<\/p>\n<p><strong>Nakase, T., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Jan-ngam, H., Am-in, S., Potacharoen, W., Tanticharoen, M., and Takashima, M.<\/strong> 2005. <em>Sporobolomyces diospyroris<\/em> sp. nov., <em>Sporobolomyces lophatheri<\/em> sp. nov. and <em>Sporobolomyces pyrrosiae<\/em> sp. nov., three new species of ballistoconidium-forming yeasts in the <em>Agaricostilbum<\/em> lineage isolated from plants in Taiwan. J. Gen. Appl. Microbiol. <strong>51:<\/strong> 277-286. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16314682?dopt=Abstract\">16314682<\/a>.<\/p>\n<p><strong>Luong, D. T., Takashima, M., Ty, P. V., Dung, N. L., and Nakase, T.<\/strong> 2005. <em>Bullera hoabinhensis<\/em> sp. nov., a new ballistoconidiogenous yeast isolated from a plant leaf collected in Vietnam. J. Gen. Appl. Microbiol. <strong>51:<\/strong> 335-342. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16474193?dopt=Abstract\">16474193<\/a>.<\/p>\n<p><strong>Kawabe, M., Kobayashi, Y., Okada, G., Yamaguchi, I., Teraoka, T., and Arie, T.<\/strong> 2005. Three evolutionary lineages of tomato wilt pathogen, <em>Fusarium oxysporum<\/em> f. sp. <em>lycopersici<\/em>, based on sequences of IGS, <em>MAT1<\/em>, and <em>pg1<\/em>, are each composed of isolates of a single mating type and a single or closely related vegetative compatibility group. J. Gen. Plant Pathol. <strong>71:<\/strong> 263-272. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10327-005-0203-6\">10.1007\/s10327-005-0203-6<\/a>.<\/p>\n<p><strong>Hayashi, H., Takahashi, R., Nishi, T., Sakamoto, M., and Benno, Y.<\/strong> 2005. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J. Med. Microbiol. <strong>54:<\/strong> 1093-1101. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16192442?dopt=Abstract\">16192442<\/a>.<\/p>\n<p><strong>Dekio, I., Hayashi, H., Sakamoto, M., Kitahara, M., Nishikawa, T., Suematsu, M., and Benno, Y.<\/strong> 2005. Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling. J. Med. Microbiol. <strong>54:<\/strong> 1231-1238. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16278439?dopt=Abstract\">16278439<\/a>.<\/p>\n<p><strong>Matsumoto, M., Sakamoto, M., Hayashi, H., and Benno, Y.<\/strong> 2005. Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota. J. Microbiol. Methods <strong>61:<\/strong> 305-319. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15767007?dopt=Abstract\">15767007<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakata, S., and Benno, Y.<\/strong> 2005. Biodiversity of <em>Lactobacillus sanfranciscensis<\/em> strains isolated from five sourdoughs. Lett. Appl. Microbiol. <strong>40:<\/strong> 353-357. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15836738?dopt=Abstract\">15836738<\/a>.<\/p>\n<p><strong>Sugita, T., Takeo, K., Hama, K., Virtudazo, E., Takashima, M., Nishikawa, A., Kucsera, J., Dorogi, J., Komori, S, Nakagaki, K., Vollekova, A, Slavikova, E., and Farkas, V.<\/strong> 2005. DNA sequence diversity of intergenic spacer I region in the non-lipid-dependent species <em>Malassezia pachydermatis<\/em> isolated from animals. Med. Mycol. <strong>43:<\/strong> 21-26. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15712605?dopt=Abstract\">15712605<\/a>.<\/p>\n<p><strong>Tonooka, T., Sakata, S., Kitahara, M., Hanai, M., Ishizeki, S., Takada, M., Sakamoto, M., and Benno, Y.<\/strong> 2005. Detection and quantification of four species of the genus <em>Clostridium<\/em> in infant feces. Microbiol. Immunol. <strong>49:<\/strong> 987-992. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16301809?dopt=Abstract\">16301809<\/a>.<\/p>\n<p><strong>Lopandic, K., Molnar, O., Suzuki, M., Pinsker, W., and Prillinger, H.<\/strong> 2005. Estimation of phylogenetic relationships within the Ascomycota on the basis of 18S rDNA sequences and chemotaxonomy. Mycol. Prog. <strong>4:<\/strong> 205-214. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s11557-006-0124-6\">10.1007\/s11557-006-0124-6<\/a>.<\/p>\n<p><strong>Sakamoto, M., Umeda, M., and Benno, Y.<\/strong> 2005. Molecular analysis of human oral microbiota. J. Periodontal Res. <strong>40:<\/strong> 277-285. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15853975?dopt=Abstract\">15853975<\/a>.<\/p>\n<p><strong>Yabuuchi, E. and Kosako, Y.<\/strong> 2005. <em>Sphingomonadaceae<\/em>, <em>In:<\/em> Brenner, D. J., Krieg, N. R., and Staley, J. T. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 2, Part C. The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, p. 233, Springer, East Lansing.<\/p>\n<p><strong>Yabuuchi, E. and Kosako, Y.<\/strong> 2005. <em>Sphingomonadales<\/em> ord. nov., <em>In:<\/em> Brenner, D. J., Krieg, N. R., and Staley, J. T. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 2, Part C. The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, pp. 230-233, Springer, East Lansing.<\/p>\n<p><strong>Yabuuchi, E. and Kosako, Y.<\/strong> 2005. <em>Sphingomonas<\/em>, <em>In:<\/em> Brenner, D. J., Krieg, N. R., and Staley, J. T. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 2, Part C. The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, pp. 234-258, Springer, East Lansing.<\/p>\n<p> <strong>Pikuta, E. V., Itoh, T., and Hoover, R. B.<\/strong> 2005. Anaerobic decomposition of cellulose by alkaliphilic microbial community of Owens Lake, California, <em>In:<\/em> Astrobiology and Planetary Missions, The Intenational Society for Optical Engineering, San Diego.<\/p>\n<p><strong>Itoh, T., Yoshikawa, N., and Takashina, T.<\/strong> 2005. Diversity of thermophilic archaeal isolates from hot springs in Japan, <em>In:<\/em> Astrobiology and Planetary Missions, The Intenational Society for Optical Engineering, San Diego.<\/p>\n<p><strong>Itoh, T.<\/strong> 2005. Isolation and preservation of thermophiles and halophiles, <em>In:<\/em> Microbial Wonders in Special Environments, pp. 5-10, The Philippine Network of Microbial Culture Collections, Quezon.<\/p>\n<p><strong>Bloom, M. L., Monsalud, R. G., and Itoh, T.<\/strong> 2005. Culture preservation techniques, <em>In:<\/em> Microbial Wonders in Special Environments, pp. 18-24, The Philippine Network of Microbial Culture Collections, Quezon.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2004\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2003\">2003<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2004<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T.<\/strong> 2004. <em>Micromonospora aurantionigra<\/em> sp. nov., isolated from a peat swamp forest in Thailand. Actinomycetologica <strong>18:<\/strong> 8-14. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.18_8\">10.3209\/saj.18_8<\/a>.<\/p>\n<p><strong>Saito, Y., Sakamoto, M., Takizawa, S., and Benno, Y.<\/strong> 2004. Monitoring the cell number and viability of <em>Lactobacillus helveticus<\/em> GCL1001 in human feces by PCR methods. FEMS Microbiol. Lett. <strong>231:<\/strong> 125-130. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14769476?dopt=Abstract\">14769476<\/a>.<\/p>\n<p><strong>Kibe, R., Sakamoto, M., Hayashi, H., Yokota, H., and Benno, Y.<\/strong> 2004. Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries. FEMS Microbiol. Lett. <strong>235:<\/strong> 139-146. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15158273?dopt=Abstract\">15158273<\/a>.<\/p>\n<p><strong>Matsumoto, M., Ohishi, H., and Benno, Y.<\/strong> 2004. H<sup>+<\/sup>-ATPase activity in <em>Bifidobacterium<\/em> with special reference to acid tolerance. Int. J. Food Microbiol. <strong>93:<\/strong> 109-113. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15135587?dopt=Abstract\">15135587<\/a>.<\/p>\n<p><strong>Sakamoto, M., Suzuki, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2004. <em>Prevotella shahii<\/em> sp. nov. and <em>Prevotella salivae<\/em> sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. <strong>54:<\/strong> 877-883. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15143039?dopt=Abstract\">15143039<\/a>.<\/p>\n<p><strong>Wang, Q.-M., Bai, F.-Y., Lu, H.-Z., Jia, J.-H., and Takashima, M.<\/strong> 2004. <em>Bullera cylindrica<\/em> sp. nov., <em>Bullera hubeiensis<\/em> sp. nov. and <em>Bullera nakasei<\/em> sp. nov., ballistoconidium-forming yeast species from plant leaves. Int. J. Syst. Evol. Microbiol. <strong>54:<\/strong> 1877-1882. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15388757?dopt=Abstract\">15388757<\/a>.<\/p>\n<p><strong>Shibazaki, M., Tanaka, K., Nagai, K., Watanabe, M., Fujita, S., Suzuki, K., Okada, G., and Yamamoto, T.<\/strong> 2004. YM-92447 (spinosulfate A), a neuraminidase inhibitor produced by an unidentified pycnidial fungus. J. Antibiotics <strong>57:<\/strong> 812-815. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15745117?dopt=Abstract\">15745117<\/a>.<\/p>\n<p><strong>Minamida, K., Sujaya, N., Tamura, A., Shigematsu, N., Sone, T., Yokota, A., Asano, K., Benno, Y., and Tomita, F. 2004.<\/strong> The effects of di-<span class=\"text02\">D<\/span>-fructofuranose-1,2&#8242;:2,3&#8242;-dianhydride (DFA III) administration on human intestinal microbiota. J. Biosci. Bioeng. <strong>98:<\/strong> 244-250. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16233700?dopt=Abstract\">16233700<\/a>.<\/p>\n<p><strong>Seearunruangchai, A., Tanasupawat, S., Keeratipibul, S., Thawai, C., Itoh, T., and Yamada, Y.<\/strong> 2004. Identification of acetic acid bacteria isolated from fruits collected in Thailand. J. Gen. Appl. Microbiol. <strong>50:<\/strong> 47-53. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15057711?dopt=Abstract\">15057711<\/a>.<\/p>\n<p><strong>Tanasupawat, S., Thawai, C., Yukphan, P., Moonmangmee, D., Itoh, T., Adachi, O., and Yamada, Y.<\/strong> 2004. <em>Gluconobacter thailandicus<\/em> sp. nov., an acetic acid bacterium in the &#945;-<em>Proteobacteria<\/em>. J. Gen. Appl. Microbiol. <strong>50:<\/strong> 159-167. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15486825?dopt=Abstract\">15486825<\/a>.<\/p>\n<p><strong>Hosoya, R., Hamana, K., Niitsu, M., and Itoh, T.<\/strong> 2004. Polyamine analysis for chemotaxonomy of thermophilic eubacteria: polyamine distribution profiles within the orders <em>Aquificales, Thermotogales, Thermodesulfobacteriales, Thermales, Thermoanaerobacteriales, Clostridiales<\/em> and <em>Bacillales<\/em>. J. Gen. Appl. Microbiol. <strong>50:<\/strong> 271-287. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15747232?dopt=Abstract\">15747232<\/a>.<\/p>\n<p><strong>Sakamoto, M., Huang, Y., Ohnishi, M., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2004. Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes. J. Med. Microbiol. <strong>53:<\/strong> 563-571. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15150339?dopt=Abstract\">15150339<\/a>.<\/p>\n<p><strong>Kageyama, A., Yazawa, K., Kudo, T., Taniguchi, H., Nishimura, K., and Mikami, Y.<\/strong> 2004. First isolates of <em>Nocardia abscessus<\/em> from humans and soil in Japan. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) <strong>45:<\/strong> 17-21. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14765097?dopt=Abstract\">14765097<\/a>.<\/p>\n<p><strong>Matsumoto, M., Ohishi, H., Kakizoe, K., and Benno, Y.<\/strong> 2004. Faecal microbiota and secretory immunogloblin A levels in adult patients with atopic dermatitis. Microb. Ecol. Health Dis. <strong>16:<\/strong> 13-17. DOI: <a href=\"https:\/\/doi.org\/10.1080\/08910600310026167\">10.1080\/08910600310026167<\/a>.<\/p>\n<p><strong>Hayashi, H., Sakamoto, M., and Benno, Y.<\/strong> 2004. Evaluation of three different forward primers by terminal restriction fragment length polymorphism analysis for determination of fecal <em>Bifidobacterium<\/em> spp. in healthy subjects. Microbiol. Immunol. <strong>48:<\/strong> 1-6. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14734852?dopt=Abstract\">14734852<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakata, S., Sakamoto, M., and Benno, Y.<\/strong> 2004. Comparison among fecal secondary bile acid levels, fecal microbiota and <em>Clostridium scindens<\/em> cell numbers in Japanese. Microbiol. Immunol. <strong>48:<\/strong> 367-375. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15215624?dopt=Abstract\">15215624<\/a>.<\/p>\n<p><strong>Sugita, T., Tajima, M., Takashima, M., Amaya, M., Saito, M. Tsuboi, R., and Nishikawa, A. 2004.<\/strong> A new yeast, <em>Malassezia yamatoensis<\/em>, isolated from a patient with seborrheic dermatitis, and its distribution in patients and healthy subjects. Microbiol. Immunol. <strong>48:<\/strong> 579-583. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15322337?dopt=Abstract\">15322337<\/a>.<\/p>\n<p><strong>Sugita, T., Takeo, K., Ohkusu, M., Virtudazo, E., Takashima, M., Asako, E., Ohshima, F., Harada, S., Yanaka, C., Nishikawa, A., Majoros, L., and Sipiczki, M.<\/strong> 2004. Fluconazole-resistant pathogens <em>Candida inconspicua<\/em> and <em>C. norvegensis<\/em>: DNA sequence diversity of the rRNA intergenic spacer region, antifungal drug susceptibility, and extracellular enzymer production. Microbiol. Immunol. <strong>48:<\/strong> 761-766. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15502409?dopt=Abstract\">15502409<\/a>.<\/p>\n<p><strong>Lan, P. T. N., Sakamoto, M., and Benno, Y.<\/strong> 2004. Effects of two probiotic <em>Lactobacillus<\/em> strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes. Microbiol. Immunol. <strong>48:<\/strong> 917-929. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15611608?dopt=Abstract\">15611608<\/a>.<\/p>\n<p><strong>Matsumoto, M. and Benno, Y.<\/strong> 2004. Consumption of <em>Bifidobacterium lactis<\/em> LKM512 yogurt reduces gut mutagenicity by increasing gut polyamine contents in healthy adult subjects. Mutat. Res. <strong>568:<\/strong> 147-153. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15542102?dopt=Abstract\">15542102<\/a>.<\/p>\n<p><strong>Nakase, T., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Jan-ngam, H., Potacharoen, W., Tanticharoen, M., Kudo, T., and Takashima, M.<\/strong> 2004. <em>Bullera begoniae<\/em> sp. nov. and <em>Bullera setariae<\/em> sp. nov., two new species of ballistoconidium-forming yeasts in the <em>Bullera variabillis<\/em> (<em>Bulleribasidium<\/em>) cluster isolated from plants in Taiwan. Mycoscience <strong>45:<\/strong> 287-294. DOI: <a href=\"https:\/\/doi.org\/10.1007\/S10267-004-0185-9\">10.1007\/S10267-004-0185-9<\/a>.<\/p>\n<p><strong>Nakase, T., Jan-ngam., H., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Potacharoen, W., Tanticharoen, M., and Takashima, M.<\/strong> 2004. Two new ballistoconidium-forming yeast species, <em>Bullera melastomae<\/em> and <em>Bullera formosana<\/em>, found in Taiwan. Syst. Appl. Microbiol. <strong>27:<\/strong> 558-564. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15490557?dopt=Abstract\">15490557<\/a>.<\/p>\n<p><strong>Matsumoto, M. and Benno, Y.<\/strong> 2004. Anti-inflammatory and antimutagenic activity of polyamines produced by <em>Bifidobacterium lactis<\/em> LKM512. Curr. Top. Neutr. Res. <strong>2:<\/strong> 219-226.<\/p>\n<p><strong>Hayashi, H., Ohara, H., Sakamoto, M., and Benno, Y.<\/strong> 2004. Cloning, sequencing, and expression of 1,4-&#946;-xylanase from human fecal microbiota, <em>In:<\/em> Ohmiya, K., Sakka, K., Karita, S., Kimura, T., Sakka, M., and Onishi, Y. (eds.), Biotechnology of Lignocellulose Degradation and Biomass Utilization, pp. 412-417, UNI Publishers Co., Ltd., Tokyo.<\/p>\n<p><strong>Itoh, T.<\/strong> 2004. Diversity of thermophilic archaea isolated from hot springs in Japan, <em>In:<\/em> Watanabe, M. M., Suzuki, K.-I., and Seki, T. (eds.), Innovative Roles of Biological Resource Centers, pp. 137-140, JSCC &amp; WFCC, Tsukuba.<\/p>\n<p><strong>Itoh, T.<\/strong> 2004. Diversity and evolutionary implication of archaea, the third domain of life, <em>In:<\/em> Sugisaka, M. and Tanaka, H. (eds.), Proc. of the Ninth Int. Symp. on Artifical Life and Robotics (AROB 9th &#8217;04), pp. 437-439, Organizing Committee of Int. Symp. on Artificial Life and Robotics, Oita.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2003\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2002\">2002<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<\/tr>\n<tr>\n<td colspan=\"5\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<p><\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2003<\/strong><\/td>\n<\/tr>\n<\/table>\n<p> <strong>Bai, F.-Y., Takashima, M., Zhao, J.-H., Jia, J.-H., and Nakase, T.<\/strong> 2003. <em>Bullera anomala<\/em> sp. nov. and <em>Bullera pseudovariabilis<\/em> sp. nov., two new ballistoconidium-forming yeast species from Yunnan, China. Antonie van Leeuwenhoek <strong>83:<\/strong> 257-263. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12776921?dopt=Abstract\">12776921<\/a>.<\/p>\n<p> <strong>Tominaga, T., Okuzawa, Y., Kato, S., and Suzuki, M.<\/strong> 2003. The first isolation of two types of trifluoroleucine resistant mutants of <em>Saccharomyces servazzii<\/em>. Biotechnol. Lett. <strong>25:<\/strong> 1735-1738. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14626417?dopt=Abstract\">14626417<\/a>.<\/p>\n<p><strong>Itoh, T., Nomura, N., and Sako, Y.<\/strong> 2003. Distribution of 16S rRNA introns among the family <em>Thermoproteaceae<\/em> and their evolutionary implications. Extremophiles <strong>7:<\/strong> 229-233. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12768454?dopt=Abstract\">12768454<\/a>.<\/p>\n<p><strong>Ueno, R., Urano, N., and Suzuki, M.<\/strong> 2003. Phylogeny of the non-photosynthetic green micro-algal genus <em>Prototheca<\/em> (Trebouxiophyceae, Chlorophyta) and related taxa inferred from SSU and LSU ribosomal DNA partial sequence data. FEMS Microbiol. Lett. <strong>223:<\/strong> 275-280. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12829298?dopt=Abstract\">12829298<\/a>.<\/p>\n<p><strong>Laine, R., Salminen, S., Benno, Y., and Ouwehand, A. C.<\/strong> 2003. Performance of bifidobacteria in oat-based media. Int. J. Food Microbiol. <strong>83:<\/strong> 105-109. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12672596?dopt=Abstract\">12672596<\/a>.<\/p>\n<p><strong>Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K.<\/strong> 2003. <em>Rhodotorula benthica<\/em> sp. nov. and <em>Rhodotorula calyptogenae<\/em> sp. nov., novel yeast species from animals collected from the deep-sea floor, and <em>Rhodotorula lysiniphila<\/em> sp. nov., which is related phylogenetically. Int. J. Syst. Evol. Microbiol. <strong>53:<\/strong> 897-903. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12807219?dopt=Abstract\">12807219<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K., Sanchez, P. C., and Nakase, T.<\/strong> 2003. <em>Caldisphaera lagunensis<\/em> gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt. Maquiling, Philippines. Int. J. Syst. Evol. Microbiol. <strong>53:<\/strong> 1149-1154. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12892143?dopt=Abstract\">12892143<\/a>.<\/p>\n<p><strong>Takashima, M., Sugita, T., Shinoda, T., and Nakase, T.<\/strong> 2003. Three new combinations from the <em>Cryptococcus laurentii<\/em> complex: <em>Cryptococcus aureus<\/em>, <em>Cryptococcus carnescens<\/em> and <em>Cryptococcus peneaus<\/em>. Int. J. Syst. Evol. Microbiol. <strong>53:<\/strong> 1187-1194. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12892148?dopt=Abstract\">12892148<\/a>.<\/p>\n<p><strong>Matsuyama, H., Yumoto, I., Kudo, T., and Shida, O.<\/strong> 2003. <em>Rhodococcus tukisamuensis<\/em> sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. <strong>53:<\/strong> 1333-1337. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/13130015?dopt=Abstract\">13130015<\/a>.<\/p>\n<p><strong>Kurosawa, N., Itoh, Y. H., and Itoh, T.<\/strong> 2003. Reclassification of <em>Sulfolobus hakonensis <\/em>Takayanagi <em>et al.<\/em> 1996 as <em>Metallosphaera hakonensis<\/em> comb. nov. based on phylogenetic evidence and DNA G+C content. Int. J. Syst. Evol. Microbiol. <strong>53:<\/strong> 1607-1608. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/13130056?dopt=Abstract\">13130056<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Kodama, M., Tsuboi, R., and Nishikawa, A.<\/strong> 2003. Description of a new yeast species, <em>Malassezia japonica<\/em>, and its detection in patients with atopic dermatitis and healthy subjects. J. Clin. Microbiol. <strong>41:<\/strong> 4695-4699. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14532205?dopt=Abstract\">14532205<\/a>.<\/p>\n<p><strong>Nakajima, Y., Ho, C. C., and Kudo, T.<\/strong> 2003. <em>Microtetraspora malaysiensis<\/em> sp. nov., isolated from Malaysian primary dipterocarp forest soil. J. Gen. Appl. Microbiol. <strong>49:<\/strong> 181-189. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12949699?dopt=Abstract\">12949699<\/a>.<\/p>\n<p><strong>Hamana, K., Tanaka, T., Hosoya, R., Niitsu, M., and Itoh, T.<\/strong> 2003. Cellular polyamines of the acidophilic, thermophilic and thermoacidophilic archaebacteria, <em>Acidilobus<\/em>, <em>Ferroplasma<\/em>, <em>Pyrobaculum<\/em>, <em>Pyrococcus<\/em>, <em>Staphylothermus<\/em>, <em>Thermococcus<\/em>, <em>Thermodiscus<\/em> and <em>Vulcanisaeta<\/em>. J. Gen. Appl. Microbiol. <strong>49:<\/strong> 287-293. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14673752?dopt=Abstract\">14673752<\/a>.<\/p>\n<p><strong>Nakase, T., Tsuzuki, S., Lee, F.-L, Sugita, T., Jindamorakot, S., Jan-ngam, H., Potacharoen, W., Tanticharoen, M., Kudo, T., and Takashima, M.<\/strong> 2003. <em>Sporobolomyces magnisporus<\/em> sp. nov., a new yeast species in the <em>Erythrobasidium<\/em> cluster isolated from plants in Taiwan. J. Gen. Appl. Microbiol. 4<strong>9:<\/strong> 337-344. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14747975?dopt=Abstract\">14747975<\/a>.<\/p>\n<p><strong>Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2003. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J. Med. Microbiol. <strong>52:<\/strong> 79-89. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12488570?dopt=Abstract\">12488570<\/a>.<\/p>\n<p><strong>Fungsin, B., Takashima, M., Bai, F.-Y., Artjariyasripong, S., and Nakase, T.<\/strong> 2003. <em>Bullera panici<\/em> sp. nov. and <em>Bullera siamensis<\/em> sp. nov., two new yeasts in the <em>Bullera variabilis<\/em> cluster isolated in Thailand. Microbiol. Cult. Collect. <strong>19:<\/strong> 23-32. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No19_1\/No19_1_23.pdf\">PDF<\/a>.<\/p>\n<p><strong>Fungsin, B., Takashima, M., Artjariyasripong, S., Potacharoen, W., and Nakase, T.<\/strong> 2003. <em>Bullera sakaeratica<\/em> sp. nov., a new species of ballistoconidium-forming yeast found in Thailand. Microbiol. Cult. Collect. <strong>19:<\/strong> 33-39. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No19_1\/No19_1_33.pdf\">PDF<\/a>.<\/p>\n<p><strong>Sakamoto, M., Hayashi, H., and Benno, Y.<\/strong> 2003. Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol. Immunol. <strong>47:<\/strong> 133-142. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12680716?dopt=Abstract\">12680716<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Poonwan, N., Mekha, N., Malaithao, K., Thungmuthasawat, B., Prasarn, S., Luangsook, P., and Kudo, T.<\/strong> 2003. The first isolation of ustilaginomycetous anamorphic yeasts,<em> Pseudozyma<\/em> species, from patients&#8217; blood and a description of two new species: <em>P. parantarctica<\/em> and <em>P. thailandica<\/em>. Microbiol. Immunol. <strong>47:<\/strong> 183-190. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12725287?dopt=Abstract\">12725287<\/a>.<\/p>\n<p><strong>Hayashi, H., Sakamoto, M., Kitahara, M., and Benno, Y.<\/strong> 2003. Molecular analysis of fecal microbiota in elderly individuals using 16S rDNA library and T-RFLP. Microbiol. Immunol. <strong>47:<\/strong> 557-570. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/14524616?dopt=Abstract\">14524616<\/a>.<\/p>\n<p><strong>Itoh, T.<\/strong> 2003. Taxonomy of nonmethanogenic hyperthermophilic and related thermophilic archaea. J. Biosci. Bioeng. <strong>96:<\/strong> 203-212. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16233511?dopt=Abstract\">16233511<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2002\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2001\">2001<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2002<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Tanaka, T., Hamana, K., and Itoh, T.<\/strong> 2002. Polyamine analysis of extremely halophilic archaebacteria and methanogenic archaebacteris. Ann. Gunma Health Sci. <strong>23:<\/strong> 137-143.<\/p>\n<p><strong>Ueno, R., Urano, N., Suzuki, M., and Kimura, S.<\/strong> 2002. Isolation, characterization, and fermentative pattern of a novel thermotolerant <em>Prototheca zopfii<\/em> var. <em>hydrocarbonea<\/em> strain producing ethanol and CO<sub>2<\/sub> from glucose at 40&#176;C. Arch. Microbiol. <strong>177:<\/strong> 244-250. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11907680?dopt=Abstract\">11907680<\/a>.<\/p>\n<p><strong>Saitoh, S., Noda, S., Aiba, Y., Takagi, A., Sakamoto, M., Benno, Y., and Koga, Y.<\/strong> 2002. <em>Bacteroides ovatus<\/em> as the predominant commensal intestinal microbe causing a systemic antibody response in inflammatory bowel disease. Clin. Diagn. Lab. Immunol. <strong>9:<\/strong> 54-59. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11777829?dopt=Abstract\">11777829<\/a>.<\/p>\n<p><strong>Matsumoto, M., Tani, H., Ono, H., Ohishi, H., and Benno, Y.<\/strong> 2002. Adhesive property of <em>Bifidobacterium lactis<\/em> LKM512 and predominant bacteria of intestinal microflora to human intesitnal mucin. Curr. Microbiol. <strong>44:<\/strong> 212-215. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11821930?dopt=Abstract\">11821930<\/a>.<\/p>\n<p><strong>Saito, Y., Hamanaka, Y., Saito, K., Takizawa, S., and Benno, Y.<\/strong> 2002. Stability of species composition of fecal bifidobacteria in human subjects during fermented milk administration. Curr. Microbiol. <strong>44:<\/strong> 368-373. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11927989?dopt=Abstract\">11927989<\/a>.<\/p>\n<p><strong>Hamamoto, M., Nagahama, T., and Tamura, M.<\/strong> 2002. Systematic study of basidiomycetous yeasts &#8211; evaluation of the ITS regions of rDNA to delimit species of the genus <em>Rhodosporidium<\/em>. FEMS Yeast Res. <strong>2:<\/strong> 409-413. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12702292?dopt=Abstract\">12702292<\/a>.<\/p>\n<p><strong>Sakamoto, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2002. Detection of novel oral phylotypes associated with periodontitis. FEMS Microbiol. Lett. <strong>217:<\/strong> 65-69. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12445647?dopt=Abstract\">12445647<\/a>.<\/p>\n<p><strong>Fungsin, B., Hamamoto, M., Arunpairojana, V., Sukhumavasi, J., Atthasampunna, P., and Nakase, T.<\/strong> 2002. <em>Kockovaella barringtoniae<\/em> sp. nov., a new basidiomycetous yeast species isolated from a plant leaf collected in a tropical rain forest in Thailand. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 281-284. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11837313?dopt=Abstract\">11837313<\/a>.<\/p>\n<p><strong>Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2002. Reclassification of <em>Bacteroides forsythus<\/em> (Tanner <em>et al.<\/em> 1986) as <em>Tannerella forsythensis<\/em> corrig., gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 841-849. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12054248?dopt=Abstract\">12054248<\/a>.<\/p>\n<p><strong>Hamamoto, M., Thanh, V. N., and Nakase, T.<\/strong> 2002. <em>Bannoa hahajimensis<\/em> gen. nov., sp. nov., and three related anamorphs, <em>Sporobolomyces bischofiae<\/em> sp. nov., <em>Sporobolomyces ogasawarensis<\/em> sp. nov. and <em>Sporobolomyces syzygii<\/em> sp. nov., yeasts isolated from plants in Japan. Int. J. Syst. Evol. Microbiol. <strong>52: <\/strong>1023-1032. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12054219?dopt=Abstract\">12054219<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K., and Nakase, T.<\/strong> 2002. <em>Vulcanisaeta distributa<\/em> gen. nov., sp. nov., and <em>Vulcanisaeta souniana<\/em> sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isoltaed from hot springs in Japan. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 1097-1104. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12148613?dopt=Abstract\">12148613<\/a>.<\/p>\n<p><strong>Behrendt, U., Ulrich, A., Schumann, P., Naumann, D., and Suzuki, K.<\/strong> 2002. Diversity of grass-associated <em>Microbacteriaceae<\/em> isolated from the phyllosphere and litter layer after mulching the sward; polyphasic characterization of <em>Subtercola pratensis<\/em> sp. nov., <em>Curtobacterium herbarum<\/em> sp. nov. and <em>Plantibacter flavus<\/em> gen. nov., sp. nov. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 1441-1454. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12361245?dopt=Abstract\">12361245<\/a>.<\/p>\n<p><strong>Yabuuchi, E., Kosako, Y., Fujiwara, N., Naka, T., Matsunaga, I. Ogura, H., and Kobayashi, K.<\/strong> 2002. Emendation of the genus <em>Sphingomonas<\/em> Yabuuchi <em>et al.<\/em> 1990 and junior objective synonymy of the species of three genera, <em>Sphingobium<\/em>, <em>Novosphingobium<\/em> and <em>Sphingopyxis<\/em>, in conjunction with <em>Blastomonas ursincola<\/em>. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 1485-1496. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12361250?dopt=Abstract\">12361250<\/a>.<\/p>\n<p><strong>Niwata, Y., Takashima, M., Tornai-Lehoczki, J., Deak, T., and Nakase, T.<\/strong> 2002. <em>Udeniomyces pannonicus<\/em> sp. nov., a ballistoconidium-forming yeast isolated from leaves of plants in Hungary. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 1887-1892. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12361301?dopt=Abstract\">12361301<\/a>.<\/p>\n<p><strong>Sakata, S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., and Benno, Y.<\/strong> 2002. Unification of <em>Bifidobacterium infantis<\/em> and <em>Bifidobacterium suis<\/em> as <em>Bifidobacterium longum<\/em>. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 1945-1951. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12508852?dopt=Abstract\">12508852<\/a>.<\/p>\n<p><strong>Buonaurio, R., Stravato, V. M., Kosako, Y., Fujiwara, N., Naka, T., Kobayashi, K., Cappelli, C., and Yabuuchi, E.<\/strong> 2002. <em>Sphingomonas melonis<\/em> sp. nov., a novel pathogen that causes brown spots on yellow Spanish melon fruits. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 2081-2087. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12508872?dopt=Abstract\">12508872<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Zhao, J.-H., Takashima, M., Jia, J.-H., Boekhout, T., and Nakase, T.<\/strong> 2002. Reclassification of the <em>Sporobolomyces roseus<\/em> and <em>Sporidiobolus pararoseus<\/em> complexes, with the description of <em>Sporobolomyces phaffii<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>52:<\/strong> 2309-2314. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12508902?dopt=Abstract\">12508902<\/a>.<\/p>\n<p><strong>He, F., Morita, H., Hashimoto, H., Hosoda, M., Kurisaki, J.-I., Ouwehand, A. C., Isolauri, E., and Benno, Y.<\/strong> 2002. Intestinal <em>Bifidobacterium<\/em> species induce varying cytokine production. J. Allergy Clin. Immunol. <strong>109:<\/strong> 1035-1036. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12063538?dopt=Abstract\">12063538<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Shinoda, T., Suto, H., Unno, T., Tsuboi, R., Ogawa, H., and Nishikawa, A.<\/strong> 2002. New yeast species, <em>Malassezia dermatis<\/em>, isolated from patients with atopic dermatitis. J. Clin. Microbiol. <strong>40:<\/strong> 1363-1367. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11923357?dopt=Abstract\">11923357<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., Jia, J.-H., and Nakase, T.<\/strong> 2002. <em>Dioszegia zsoltii<\/em> sp. nov., a new ballistoconidium-forming yeast species with two varieties. J. Gen. Appl. Microbiol. <strong>48:<\/strong> 17-23. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12469312?dopt=Abstract\">12469312<\/a>.<\/p>\n<p><strong>Suzuki, M. and Nakase, T.<\/strong> 2002. A phylogenetic study of ubiquinone-7 species of the genus <em>Candida<\/em> based on 18S ribosomal DNA sequence divergence. J. Gen. Appl. Microbiol. <strong>48:<\/strong> 55-65. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12469316?dopt=Abstract\">12469316<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Nakase, T., Ichikawa, T., Shinoda, T., and Nishikawa, A.<\/strong> 2002. A basidiomycetous anamorphic yeast, <em>Trichosporon terricola<\/em> sp. nov., isolated from soil. J. Gen. Appl. Microbiol. <strong>48:<\/strong> 293-297. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501440?dopt=Abstract\">12501440<\/a>.<\/p>\n<p><strong>Nakase, T., Tsuzuki, S., and Takashima, M.<\/strong> 2002. <em>Bullera taiwanensis<\/em> sp. nov. and <em>Bullera formosensis<\/em> sp. nov., two new ballistoconidium-forming yeast species isolated from plant leaves in Taiwan. J. Gen. Appl. Microbiol. <strong>48:<\/strong> 345-355. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12682873?dopt=Abstract\">12682873<\/a>.<\/p>\n<p><strong>Fungsin, B., Takashima, M., Artjariyasripong, S., Arunpairojana, V., Hamamoto, M, and Nakase, T.<\/strong> 2002. <em>Bullera arundinariae<\/em> sp. nov., a new species of ballistoconidium-forming yeast, isolated from a plant in Thailand. Microbiol. Cult. Collect. <strong>18: <\/strong>83-90. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No18_2\/No18_2_83.pdf\">PDF<\/a>.<\/p>\n<p><strong>Lan, P. T. N., Hayashi, H., Sakamoto, M., and Benno, Y.<\/strong> 2002. Phylogenetic analysis of cecal microbiota in chicken by the use of 16S rDNA clone libraries. Microbiol. Immunol. <strong>46:<\/strong> 371-382. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12153114?dopt=Abstract\">12153114<\/a>.<\/p>\n<p><strong>Nakamura, J., Kubota, Y., Miyaoka, M., Saitoh, T., Mizuno, F., and Benno, Y.<\/strong> 2002. Comparison of four microbial enzymes in clostridia and bacteroides isolated from human feces. Microbiol. Immunol. <strong>46:<\/strong> 487-490. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12222935?dopt=Abstract\">12222935<\/a>.<\/p>\n<p><strong>Hayashi, H., Sakamoto, M., and Benno, Y. <\/strong>2002. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. <strong>46:<\/strong> 535-548. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12597356?dopt=Abstract\">12597356<\/a>.<\/p>\n<p><strong>Hayashi, H., Sakamoto, M., and Benno, Y.<\/strong> 2002. Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol. Immunol. <strong>46:<\/strong> 819-831. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12363017?dopt=Abstract\">12363017<\/a>.<\/p>\n<p><strong>Park, J.-Y., Okada, G., Takahashi, M., and Oyaizu, H.<\/strong> 2002. Screening of fungal antagonists against yellows of cabbage caused by <em>Fusarium oxysporum<\/em> f. sp. <em>conglutinans<\/em>. Mycoscience 43: 447-451. DOI: <a href=\"https:\/\/doi.org\/10.1007\/S102670200064\">10.1007\/S102670200064<\/a>.<\/p>\n<p><strong>Morishita, Y., Oowada, T., Ozaki, A., and Mizutani, T.<\/strong> 2002. Galactooligosaccharide in combination with <em>Bifidobacterium<\/em> and <em>Bacteroides<\/em> affects the population of <em>Clostridium perfringens<\/em> in the intestine of gnotobiotic mice. Nutr. Res. <strong>22:<\/strong> 1333-1341. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0271-5317(02)00455-4\">10.1016\/S0271-5317(02)00455-4<\/a>.<\/p>\n<p><strong>He, F., Isolauri, E., Morita, H., Hosoda, M., Hashimoto, H., Fuse, T., Mizumachi, K., Kurisaki, J. Benno, Y., Salminen, S., and Ouwehand, A. C.<\/strong> 2002. Bifidobacteria isolated from allergic and healthy infants: differences in taxonomy, mucus adhesion and immune modulatory effects. Microecol. Ther. <strong>29:<\/strong> 103-108.<\/p>\n<p><strong>Benno, Y.<\/strong> 2002. Bifidobacteria dairy products-market opportunities in Japan. Nutr. Health <strong>375:<\/strong> 20-21.<\/p>\n<p><strong>Belloch, C., Hamamoto, M., Eliskases-Lechner, F., and Prillinger, H.<\/strong> 2002. <em>Kluyveromyces <\/em>spp., <em>In:<\/em> Roginsky, H., Fuquay, J. W., and Fox, P. F. (eds.), Encyclopedia of Dairy Sciences, pp. 1417-1428, Academic Press., London. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B0-12-227235-8\/00228-5\">10.1016\/B0-12-227235-8\/00228-5<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2001\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#2000\">2000<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2001<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Sorimachi, K., Itoh, T., Kawarabayashi, Y., Okayasu, T., Akimoto, K., and Niwa, A.<\/strong> 2001. Conservation of the basic pattern of cellular amino acid composition of archaeobacteria during biological evolution and the putative amino acid composition of primitive life forms. Amino Acids <strong>21:<\/strong> 393-399. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11858698?dopt=Abstract\">11858698<\/a>.<\/p>\n<p><strong>Matsui, H., Ogata, K., Tajima, K., Nagamine, T., Nakamura, M., Aminov, R. I., and Benno, Y.<\/strong> 2001. Cloning, expression, and characterization of a cellulase gene from <em>Prevotella ruminicola<\/em>. Anim. Sci. J. <strong>72:<\/strong> 421-426. DOI: <a href=\"https:\/\/doi.org\/10.2508\/chikusan.72.421\">10.2508\/chikusan.72.421<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 2001. <em>Tilletiopsis derxii<\/em>, <em>Tilletiopsis oryzicola<\/em> and <em>Tilletiopsis penniseti<\/em>, three new species of the ustilagionomycetous anamorphic genus <em>Tilletiopsis<\/em> isolated from leaves in Thailand. Antonie van Leeuwenhoek <strong>80:<\/strong> 43-56. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11761366?dopt=Abstract\">11761366<\/a>.<\/p>\n<p><strong>Nagahama, T., Hamamoto, M., Nakase, T., Takami, H., and Horikoshi, K.<\/strong> 2001. Distribution and identification of red yeasts in deep-sea environments around the northwest Pacific Ocean. Antonie van Leeuwenhoek <strong>80:<\/strong> 101-110. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11759043?dopt=Abstract\">11759043<\/a>.<\/p>\n<p><strong>Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K.<\/strong> 2001. <em>Rhodotorula lamellibrachii<\/em> sp. nov., a new yeast species from a tubeworm collected at the deep-sea floor in Sagami Bay and its phylogenetic analysis. Antonie van Leeuwenhoek <strong>80:<\/strong> 317-323. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11827218?dopt=Abstract\">11827218<\/a>.<\/p>\n<p><strong>Tajima, K., Aminov, R. I., Nagamine, T., Matsui, H., Nakamura, M., and Benno, Y.<\/strong> 2001. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl. Environ. Microbiol. <strong>67:<\/strong> 2766-2774. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11375193?dopt=Abstract\">11375193<\/a>.<\/p>\n<p><strong>He, F., Ouwehand, A. C., Isolauri, E., Hosoda, M., Benno, Y., and Salminen, S.<\/strong> 2001. Differences in composition and mucosal adhesion of bifidobacteria isolated from healthy adults and healthy seniors. Curr. Microbiol. <strong>43:<\/strong> 351-354. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11688800?dopt=Abstract\">11688800<\/a>.<\/p>\n<p><strong>Itoh, Y. H., Kurosawa, N., Uda, I., Sugai, A., Tanoue, S., Itoh, T., Horiuchi, T., and Itoh, T.<\/strong> 2001. <em>Metallosphaera sedula<\/em> TA-2, a calditoglycerocaldarchaeol deletion strain of a thermoacidophilic archaeon. Extremophiles <strong>5:<\/strong> 241-245. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11523893?dopt=Abstract\">11523893<\/a>.<\/p>\n<p><strong>He, F., Ouwehand, A. C., Isolauri, E., Hashimoto, H., Benno, Y., and Salminen, S.<\/strong> 2001. Comparison of mucosal adhesion and species identification of bifidobacteria isolated from healthy and allergic infants. FEMS Immunol. Med. Microbiol. <strong>30:<\/strong> 43-47. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11172990?dopt=Abstract\">11172990<\/a>.<\/p>\n<p><strong>Matsumoto, M., Ohishi, H., and Benno, Y.<\/strong> 2001. Impact of LKM512 yogurt on improvement of intestinal environment of the elderly. FEMS Immunol. Med. Microbiol. <strong>31:<\/strong> 181-186. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11720813?dopt=Abstract\">11720813<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., and Nakase, T.<\/strong> 2001. Description of <em>Bullera kunmingenis<\/em> sp. nov., and clarification of the taxonomic status of <em>Bullera sinensis <\/em>and its synonyms based on molecular phylogenetic analysis. FEMS Yeast Res. <strong>1:<\/strong> 103-109. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12702355?dopt=Abstract\">12702355<\/a>.<\/p>\n<p><strong>Kitahara, M., Takamine, F., Imamura, T., and Benno, Y.<\/strong> 2001. <em>Clostridium hiranonis<\/em> sp. nov., a human intestinal bacterium with bile acid 7&#945;-dehydroxylating activity. Int. J. Syst. Evol. Microbiol. <strong>51: <\/strong>39-44. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11211270?dopt=Abstract\">11211270<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., Hamamoto, M., and Nakase, T.<\/strong> 2001. <em>Sporobolomyces yunnanensis<\/em> sp. nov., a Q-10(H<sub>2<\/sub>)-containing yeast species with a close phylogenetic relationship to <em>Erythrobasidium hasegawianum<\/em>. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 231-235. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11211263?dopt=Abstract\">11211263<\/a>.<\/p>\n<p><strong>Yabuuchi, E., Yamamoto, H., Terakubo, S., Okamura, N., Naka, T., Fujiwara, N., Kobayashi, K., Kosako, Y., and Hiraishi, A.<\/strong> 2001. Proposal of <em>Sphingomonas wittichii<\/em> sp. nov. for strain RW1<sup>T<\/sup>, known as a dibenzo-<em>p<\/em>-dioxin metabolizer. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 281-292. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11321072?dopt=Abstract\">11321072<\/a>.<\/p>\n<p><strong>Zhang, Z., Kudo, T., Nakajima, Y., and Wang, Y.<\/strong> 2001. Clarification of the relationship between the members of the family <em>Thermomonosporaceae<\/em> on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 373-383. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11321082?dopt=Abstract\">11321082<\/a>.<\/p>\n<p><strong>Fungsin, B., Hamamoto, M., Arunpairojana, V., Sukhumavasi, J., Atthasampunna, P., and Nakase, T.<\/strong> 2001. <em>Bensingtonia thailandica<\/em> sp. nov., a novel basidiomycetous yeast species isolated from plant leaves in Thailand. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 1209-1213. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11411689?dopt=Abstract\">11411689<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Nakase, T., Ichikawa, T., Ikeda, R., and Shinoda, T.<\/strong> 2001. Two new yeasts, <em>Trichosporon debeurmannianum<\/em> sp. nov. and <em>Trichosporon dermatis<\/em> sp. nov., transferred from the <em>Cryptococcus humicola<\/em> complex. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 1221-1228. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11411691?dopt=Abstract\">11411691<\/a>.<\/p>\n<p><strong>Xin, H., Itoh, T., Zhou, P., Suzuki, K.-I., and Nakase, T.<\/strong> 2001. <em>Natronobacterium nitratireducens<\/em> sp. nov., a haloalkaliphilic archaeon isolated from a soda lake in China. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 1825-1829. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11594615?dopt=Abstract\">11594615<\/a>.<\/p>\n<p><strong>Euz&eacute;by, J. P. and Kudo, T.<\/strong> 2001. Corrigenda to the Validation Lists. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 1933-1938. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11594628?dopt=Abstract\">11594628<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., and Nakase, T.<\/strong> 2001. Phylogenetic analysis of strains originally assigned to <em>Bullera variabilis<\/em>: descriptions of <em>Bullera pseudohuiaensis<\/em> sp. nov., <em>Bullera komagatae<\/em> sp. nov. and <em>Bullera pseudoschimicola<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 2177-2187. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11760961?dopt=Abstract\">11760961<\/a>.<\/p>\n<p><strong>Takashima, M., Sugita, T., Shinoda, T., and Nakase, T.<\/strong> 2001. Reclassification of the <em>Cryptococcus humicola<\/em> complex. Int. J. Syst. Evol. Microbiol. <strong>51:<\/strong> 2199-2210. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11760963?dopt=Abstract\">11760963<\/a>.<\/p>\n<p><strong>Ouwehand, A. C., Isolauri, E., He, F., Hashimoto, H., Benno, Y., and Salminen, S.<\/strong> 2001. Differences in <em>Bifidobacterium<\/em> flora composition in allergic and healthy infants. J. Allergy Clin. Immunol. <strong>108:<\/strong> 144-145. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11447399?dopt=Abstract\">11447399<\/a>.<\/p>\n<p><strong>Honda, Y., Ueki, M., Okada, G., Onose, R., Usami, R., Horikoshi, K., and Osada, H.<\/strong> 2001. Isolation, and biological properties of a new cell cycle inhibitor, curvularol, isolated from <em>Curvularia<\/em> sp. RK97-F166. J. Antibiot. <strong>54:<\/strong> 10-16. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11269706?dopt=Abstract\">11269706<\/a>.<\/p>\n<p><strong>Muroi, M., Sano, K., Okada, G., Koshino, H., Oku, T., and Takatsuki, A.<\/strong> 2001. F13459, a new derivative of mycophenolic acid. I. Taxonomy, isolation, and biological properties. J. Antibiot. <strong>54:<\/strong> 489-493. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11513037?dopt=Abstract\">11513037<\/a>.<\/p>\n<p><strong>Kakeya, H., Kageyama, S.-I., Nie, L., Onose, R., Okada, G., Beppu, T., Norbury, C. J., and Osada, H.<\/strong> 2001. Lucilactaene, a new cell cycle inhibitor in p53-transfected cancer cells, produced by a <em>Fusarium<\/em> sp. J. Antibiot. <strong>54:<\/strong> 850-854. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11776444?dopt=Abstract\">11776444<\/a>.<\/p>\n<p><strong>Sugita, T., Ichikawa, T., Matsukura, M., Sueda, M., Takashima, M., Ikeda, R., Nishikawa, A., and Shinoda, T.<\/strong> 2001. Genetic diversity and biochemical characteristics of <em>Trichosporon asahii<\/em> isolated from clinical specimens, houses of patients with summer-type-hypersensitivity pneumonitis, and environmental materials. J. Clin. Microbiol. <strong>39:<\/strong> 2405-2411. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11427546?dopt=Abstract\">11427546<\/a>.<\/p>\n<p><strong>Luong, T. D., Takashima, M., Ty, V. P., Dung, L. N., and Nakase, T.<\/strong> 2001. Four new species of <em>Kockovaella<\/em> isolated from plant leaves collected in Vietnam. J. Gen. Appl. Microbiol. <strong>46:<\/strong> 297-310. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12483571?dopt=Abstract\">12483571<\/a>.<\/p>\n<p><strong>Takashima, M., Deak, T., and Nakase, T.<\/strong> 2001. Emendation of <em>Dioszegia<\/em> with redescription of <em>Dioszegia hungarica<\/em> and two new combinations, <em>Dioszegia aurantiaca<\/em> and <em>Dioszegia crocea<\/em>. J. Gen. Appl. Microbiol. <strong>47:<\/strong> 75-84. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12483559?dopt=Abstract\">12483559<\/a>.<\/p>\n<p><strong>Takeuchi, Y., Umeda, M., Sakamoto, M., Benno, Y., Huang, Y., and Ishikawa, I.<\/strong> 2001. <em>Treponema socranskii<\/em>, <em>Treponema denticola<\/em>, and <em>Porphyromonas gingivalis<\/em> are associated with severity of periodontal tissue destruction. J. Periodontol. <strong>72:<\/strong> 1354-1363. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11699477?dopt=Abstract\">11699477<\/a>.<\/p>\n<p><strong>Nakase, T., Takashima, M., Itoh, M., Fungsin, B., Potacharoen, W., Atthasampunna, P., and Komagata, K.<\/strong> 2001. Ballistoconidium-forming yeasts found in the phyllosphere of Thailand. Microbiol. Cult. Collect. <strong>17:<\/strong> 23-33. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No17_1\/No17_1_23.pdf\">PDF<\/a>.<\/p>\n<p><strong>Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2001. Rapid detection and quantification of five periodontopathic bacteria by real-time PCR. Microbiol. Immunol. <strong>45:<\/strong> 39-44. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11270605?dopt=Abstract\">11270605<\/a>.<\/p>\n<p><strong>He, F., Ouwehand, A. C., Hashimoto, H., Isolauri, E., Benno, Y., and Salminen, S.<\/strong> 2001. Adhesion of <em>Bifidobacterium<\/em> spp. to human intestinal mucus. Microbiol. Immunol. <strong>45:<\/strong> 259-262. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11345536?dopt=Abstract\">11345536<\/a>.<\/p>\n<p><strong>Kitahara, M., Sakamoto, M., and Benno, Y.<\/strong> 2001. PCR detection method of <em>Clostridium scindens<\/em> and <em>C. hiranonis<\/em> in human fecal samples. Microbiol. Immunol. <strong>45:<\/strong> 263-266. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11345537?dopt=Abstract\">11345537<\/a>.<\/p>\n<p><strong>Ryu, C. S., Czajka, J. W., Sakamoto, M., and Benno, Y.<\/strong> 2001. Characterization of the <em>Lactobacillus casei <\/em>group and the <em>Lactobacillus acidophilus<\/em> group by automated ribotyping. Microbiol. Immunol. <strong>45:<\/strong> 271-275. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11386416?dopt=Abstract\">11386416<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T.<\/strong> 2001. Intraspecies diversity of <em>Cryptococcus albidus<\/em> isolated from humans as revealed by sequences of the internal transcribed spacer regions. Microbiol. Immunol. <strong>45:<\/strong> 291-297. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11386419?dopt=Abstract\">11386419<\/a>.<\/p>\n<p><strong>Kageyama, A. and Benno, Y.<\/strong> 2001. Rapid detection of human fecal <em>Eubacterium<\/em> species and related genera by nested PCR method. Microbiol. Immunol. <strong>45:<\/strong> 315-318. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11386422?dopt=Abstract\">11386422<\/a>.<\/p>\n<p><strong>Hamana, K. and Itoh, T.<\/strong> 2001. Polyamines of the hyperthermophilic archaebacteria belonging to the genera <em>Thermococcus<\/em> and <em>Methanothermus<\/em> and two new genera <em>Caldivirga<\/em> and <em>Palaeococcus<\/em>. Microbios <strong>104:<\/strong> 105-114. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11297011?dopt=Abstract\">11297011<\/a>.<\/p>\n<p><strong>Hamana, K., Niitsu, M., Samejima, K., and Itoh, T.<\/strong> 2001. Polyamines of the thermophilic eubacteria belonging to the genera <em>Thermosipho<\/em>, <em>Thermaerobacter<\/em> and <em>Caldicellulosiruptor<\/em>. Microbios <strong>104:<\/strong> 177-185. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11327112?dopt=Abstract\">11327112<\/a>.<\/p>\n<p><strong>Tanaka, K., Plattner, R. D., Yamagishi, R., Minamisawa, M., Manabe, M., Kawasugi, S., Gareis, M., and Okada, G.<\/strong> 2001. 8-Deoxy-trichothecin production by <em>Spicellum roseum<\/em> isolated from a cultivated mushroom in Japan. Mycotoxins <strong>51:<\/strong> 71-77. DOI: <a href=\"https:\/\/doi.org\/10.2520\/myco.51.71\">10.2520\/myco.51.71<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K.-I., Sanchez, P. C., and Nakase, T. <\/strong>2001. Genus II. <em>Caldivirga<\/em> Itoh, Suzuki, Sanchez and Nakase 1999, 1162<SUP>VP<\/SUP>, <em>In:<\/em> Boone, D. R. and Castenholz, R. W. (eds.), Bergey&#8217;s Manual of Systematic Bacteriology, 2nd ed., vol. 1, The Archaea and the Deeply Branching and Phototrophic Bacteria, pp. 173-174, Springer, New York.<\/p>\n<p><strong>Suzuki, K.-I., Tapay, L. M., and Rahayu, E. S.<\/strong> 2001. Culture collection networks in Asia: a role of Asian network on microbial researches (ANMR) project, <em>In:<\/em> Nga, B. H., Tan, H. M., and Suzuki, K.-I. (eds.), Microbial Diversity in Asia. Technology and Prospects, pp. 71-89, World Scientific Publishing, Singapore.<\/p>\n<p><strong>Ho, C. C., Tan, G. Y. A., Seow, I., Ajam, N., Tan, E. L., Goodfellow, M., Ward, A. C., Brown, R., Wong, N. K., Lo, C. W., Cheah, H. Y., Lai, N. S., and Suzuki, K.-I.<\/strong> 2001. Isolation, characterisation and biological activities of actinomycetes isolated from dipterocarp rain forest soils in Malaysia, <em>In:<\/em> Nga, B. H., Tan, H. M., and Suzuki, K.-I. (eds.), Microbial Diversity in Asia. Technology and Prospects, pp. 209-228, World Scientific Publishing, Singapore. DOI: <a href=\"https:\/\/doi.org\/10.1142\/9789812811820_0012\">10.1142\/9789812811820_0012<\/a>.<\/p>\n<p><strong>Sugita, T., Ikeda, R., Takashima, M., Nakase, T., Nishikawa, A., and Shinoda, T.<\/strong> 2001. Genetic diversity of the opportunistic yeast pathogen, <em>Cryptococcus<\/em> species, <em>In:<\/em> Benedik, M. (ed.), Research Advance in Microbiology, vol. 2, pp. 27-46, Global Research Network, Kerala.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"2000\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1999\">1999<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>2000<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Tajima, K., Arai, S., Ogata, K., Nagamine, T., Matsui, H., Nakamura, M., Aminov, R. I., and Benno, Y.<\/strong> 2000. Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe <strong>6:<\/strong> 273-284. DOI: <a href=\"https:\/\/doi.org\/10.1006\/anae.2000.0353\">10.1006\/anae.2000.0353<\/a>.<\/p>\n<p><strong>Matsumoto, A., Takahashi, Y., Kudo, T., Seino, A., Iwai, Y., and Omura, S.<\/strong> 2000. <em>Actinoplanes capillaceus<\/em> sp. nov., a new species of the genus <em>Actinoplanes<\/em>. Antonie van Leeuwenhoek <strong>78:<\/strong> 107-115. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11204762?dopt=Abstract\">11204762<\/a>.<\/p>\n<p><strong>Nakamura, M., Ogata, K., Nagamine, T., Tajima, K., Matsui, H., and Benno, Y.<\/strong> 2000. Characterization of the cryptic plasmid pSBO2 isolated from <em>Streptococcus bovis<\/em> JB1 and construction of a new shuttle vector. Curr. Microbiol. <strong>41:<\/strong> 27-32. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10919395?dopt=Abstract\">10919395<\/a>.<\/p>\n<p><strong>Matsui, H., Ogata, K., Tajima, K., Nakamura, M., Nagamine, T., and Benno, Y.<\/strong> 2000. Phenotypic characterization of polysaccharidases produced by four <em>Prevotella<\/em> type strains. Curr. Microbiol. <strong>41:<\/strong> 45-49. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10919398?dopt=Abstract\">10919398<\/a>.<\/p>\n<p><strong>Inoue, K., Sugiyama, K., Kosako, Y., Sakazaki, R., and Yami, S.<\/strong> 2000. <em>Enterobacter cowanii<\/em> sp. nov., a new species of the family <em>Enterobacteriaceae<\/em>. Curr. Microbiol. <strong>41:<\/strong> 417-420. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11080391?dopt=Abstract\">11080391<\/a>.<\/p>\n<p><strong>Furumoto, H., Taguchi, A., Itoh, T., Morinaga, T., and Itoh, T.<\/strong> 2000. 5S rRNA binding proteins from the hyperthermophilic archaeon, <em>Pyrococcus furiosus<\/em>. FEBS Lett. <strong>486:<\/strong> 195-199. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11119702?dopt=Abstract\">11119702<\/a>.<\/p>\n<p><strong>Kageyama, A., Sakamoto, M., and Benno, Y.<\/strong> 2000. Rapid identification and quantification of <em>Collinsella aerofaciens<\/em> using PCR. FEMS Microbiol. Lett. <strong>183:<\/strong> 43-47. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10650200?dopt=Abstract\">10650200<\/a>.<\/p>\n<p><strong>Hamamoto, M., Tamura, M., and Nakase, T.<\/strong> 2000. Emended descriptions of <em>Tilletiopsis washingtonensis<\/em>, <em>Tilletiopsis cremea<\/em> and <em>Tilletiopsis lilacina<\/em>. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 925-930. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10758905?dopt=Abstract\">10758905<\/a>.<\/p>\n<p><strong>Kitahara, M., Takamine, F., Imamura, T., and Benno, Y.<\/strong> 2000. Assignment of <em>Eubacterium<\/em> sp. VPI 12708 and related strains with high bile acid 7&#945;-dehydroxylating activity to <em>Clostridium scindens<\/em> and proposal of <em>Clostridium hylemonae<\/em> sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 971-978. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10843034?dopt=Abstract\">10843034<\/a>.<\/p>\n<p><strong>Xin, H., Itoh, T., Zhou, P., Suzuki, K., Kamekura, M., and Nakase, T.<\/strong> 2000. <em>Natrinema versiforme<\/em> sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 1297-1303. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10843075?dopt=Abstract\">10843075<\/a>.<\/p>\n<p><strong>Hamamoto, M. and Nakase, T.<\/strong> 2000. Phylogenetic analysis of the ballistoconidium-forming yeast genus <em>Sporobolomyces<\/em> based on 18S rDNA sequences. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 1373-1380. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10843083?dopt=Abstract\">10843083<\/a>.<\/p>\n<p><strong>Uchino, M., Kosako, Y., Uchimura, T., and Komagata, K.<\/strong> 2000. Emendation of <em>Pseudomonas straminea<\/em> Iizuka and Komagata 1963. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 1513-1619. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10939658?dopt=Abstract\">10939658<\/a>.<\/p>\n<p><strong>Kageyama, A. and Benno, Y.<\/strong> 2000. <em>Catenibacterium mitsuokai<\/em> gen. nov., sp. nov., a Gram-positive anaerobic bacterium isolated from human faeces. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 1595-1599. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10939666?dopt=Abstract\">10939666<\/a>.<\/p>\n<p><strong>Kageyama, A. and Benno, Y.<\/strong> 2000. Emendation of genus <em>Collinsella<\/em> and proposal of <em>Collinsella stercoris<\/em> sp. nov. and <em>Collinsella intestinalis<\/em> sp. nov. Int. J. Syst. Evol. Microbiol. <strong>50:<\/strong> 1767-1774. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11034485?dopt=Abstract\">11034485<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T.<\/strong> 2000. Intraspecies diversity of <em>Cryptococcus laurentii<\/em> as revealed by sequences of internal transcribed spacer regions and 28S rRNA gene and the taxonomic position of <em>C. laurentii<\/em> clinical isolates. J. Clin. Microbiol. <strong>38:<\/strong> 1468-1471. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10747127?dopt=Abstract\">10747127<\/a>.<\/p>\n<p><strong>Nakase, T.<\/strong> 2000. Expanding world of ballistosporous yeasts: distribution in the phyllosphere, systematics and phylogeny. J. Gen. Appl. Microbiol. <strong>46:<\/strong> 189-216. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12483579?dopt=Abstract\">12483579<\/a>.<\/p>\n<p><strong>Matsumoto, M., Tadenuma, T., Nakamura, K., Kume, H., Imai, T., Kihara, R., Watanabe, M., and Benno, Y.<\/strong> 2000. Effect of <em>Bifidobacterium lactis<\/em> LKM 512 yogurt on fecal microflora in middle to old aged persons. Microb. Ecol. Health Dis. <strong>12:<\/strong> 77-80. DOI: <a href=\"https:\/\/doi.org\/10.1080\/089106000435455\">10.1080\/089106000435455<\/a>.<\/p>\n<p><strong>Hasegawa, H. and Benno, Y.<\/strong> 2000. Anticarcinogenesis in mice by ginseng-hydrolyzing colonic bacteria. Microb. Ecol. Health Dis. <strong>12:<\/strong> 85-91. DOI: <a href=\"https:\/\/doi.org\/10.1080\/089106000435473\">10.1080\/089106000435473<\/a>.<\/p>\n<p><strong>Kageyama, A. and Benno, Y.<\/strong> 2000. <em>Coprobacillus catenaformis<\/em> gen. nov., sp. nov., a new genus and species isolated from human feces. Microbiol. Immunol. <strong>44:<\/strong> 23-28. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10711596?dopt=Abstract\">10711596<\/a>.<\/p>\n<p><strong>Kageyama, A. and Benno, Y.<\/strong> 2000. Phylogenic and phenotypic characterization of some <em>Eubacterium<\/em>-like isolates from human feces: description of <em>Solobacterium moorei<\/em> gen. nov., sp. nov. Microbiol. Immunol. <strong>44:<\/strong> 223-227. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10832964?dopt=Abstract\">10832964<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T.<\/strong> 2000. Phylogenetic and taxonomic heterogeneity of <em>Cryptococcus humicolus<\/em> by analysis of the sequences of the internal transcribed spacer regions and 18S rDNA, and the phylogenetic relationships of <em>C. humicolus<\/em>, <em>C. curvatus<\/em>, and the genus <em>Trichosporon<\/em>. Microbiol. Immunol. <strong>44:<\/strong> 455-461. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10941928?dopt=Abstract\">10941928<\/a>.<\/p>\n<p><strong>Kosako, Y., Yabuuchi, E., Naka, T., Fujiwara, N., and Kobayashi, K.<\/strong> 2000. Proposal of <em>Sphingomonadaceae<\/em> fam. nov., consisting of <em>Sphingomonas<\/em> Yabuuchi et al. 1990, <em>Erythrobacter<\/em> Shiba and Shimidu 1982, <em>Erythromicrobium<\/em> Yurkov et al. 1994, <em>Porphyrobacter<\/em> Fuerst et al. 1993, <em>Zymomonas<\/em> Kluyver and van Niel 1936, and <em>Sandaracinobacter<\/em> Yurkov et al. 1997, with the type genus <em>Sphingomonas<\/em> Yabuuchi et al. 1990. Microbiol. Immunol. <strong>44:<\/strong> 563-575. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10981829?dopt=Abstract\">10981829<\/a>.<\/p>\n<p><strong>Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y.<\/strong> 2000. Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries. Microbiol. Immunol. <strong>44:<\/strong> 643-652. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11021394?dopt=Abstract\">11021394<\/a>.<\/p>\n<p><strong>Cai, Y., Matsumoto, M., and Benno, Y.<\/strong> 2000. <em>Bifidobacterium lactis<\/em> Meile et al. 1997 is a subjective synonym of <em>Bifidobacterium animalis<\/em> (Mitsuoka 1969) Scardovi and Trovatelli 1974. Microbiol. Immunol. <strong>44:<\/strong> 815-820. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11128064?dopt=Abstract\">11128064<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 2000. Four new species of the genus <em>Sporobolomyces<\/em> isolated from leaves in Thailand. Mycoscience <strong>41:<\/strong> 357-369. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02463949\">10.1007\/BF02463949<\/a>.<\/p>\n<p><strong>Okada, G., Jacobs, K., Kirisits, T., Louis-Seize, G. W., Seifert, K. A., Sugita, T., Takematsu, A., and Wingfield, M. J.<\/strong> 2000. Epitypification of <em>Graphium penicillioides<\/em> Corda, with comments on the phylogeny and taxonomy of graphium-like synnematous fungi. Stud. Mycol. <strong>45:<\/strong> 169-186.<\/p>\n<p><strong>Takashima, M., Hamamoto, M., and Nakase, T.<\/strong> 2000. Taxonomic significance of fucose in the class Urediniomycetes: distribution of fucose in cell wall and phylogeny of urediniomycetous yeasts. Syst. Appl. Microbiol. <strong>23:<\/strong> 63-70. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10879980?dopt=Abstract\">10879980<\/a>.<\/p>\n<p><strong>Hamamoto, M. and Nakase, T. 2000.<\/strong> Phylogenetic relationships among fungi inferred from small subunit ribosomal RNA gene sequences, <em>In:<\/em> Priest, F. G. and Goodfellow, M. (eds.), Applied Microbial Systematics, pp. 57-71, Kluwer Academic Publishers, Dordrecht. DOI: <a href=\"https:\/\/doi.org\/10.1007\/978-94-011-4020-1_3\">10.1007\/978-94-011-4020-1_3<\/a>.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1999\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1998\">1998<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1999<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Cai, Y., Kumai, S., Zhang, J., and Benno, Y.<\/strong> 1999. Comparative studies of lactobacilli and enterococci associated with forage crops as silage inoculants. Anim. Sci. J. <strong>70:<\/strong> 188-194. DOI: <a href=\"https:\/\/doi.org\/10.2508\/chikusan.70.188\">10.2508\/chikusan.70.188<\/a>.<\/p>\n<p><strong>Ogawara, H., Kawamura, N., Kudo, T., Suzuki, K., and Nakase, T.<\/strong> 1999. Distribution of &#946;-lactamases in actinomycetes. Antimicrob. Agents Chemother. <strong>43:<\/strong> 3014-3017. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10582901?dopt=Abstract\">10582901<\/a>.<\/p>\n<p><strong>Cai, Y., Kumai, S., Ogawa, M., Benno, Y., and Nakase, T.<\/strong> 1999. Characterization and identification of <em>Pediococcus<\/em> species isolated from forage crops and their application for silage preparation. Appl. Environ. Microbiol. <strong>65:<\/strong> 2901-2906. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10388681?dopt=Abstract\">10388681<\/a>.<\/p>\n<p><strong>Nakamura, M., Nagamine, T., Ogata, K., Tajima, K., Matsui, H., Aminov, R. I., and Benno, Y.<\/strong> 1999. Sequence analysis of small cryptic plasmids isolated from <em>Selenomonas ruminantium<\/em> S20. Curr. Microbiol. <strong>38:<\/strong> 107-112. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9871109?dopt=Abstract\">9871109<\/a>.<\/p>\n<p><strong>Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Nakamura, M., Matsui, H., and Benno, Y.<\/strong> 1999. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Microbiol. Ecol. <strong>29:<\/strong> 159-169. DOI: <a href=\"https:\/\/doi.org\/10.1111\/j.1574-6941.1999.tb00607.x\">10.1111\/j.1574-6941.1999.tb00607.x<\/a>.<\/p>\n<p><strong>Ogata, K., Sekizaki, T., Aminov, R. I., Tajima, K., Nakamura, M., Nagamine, T., Matsui, H., and Benno, Y.<\/strong> 1999. A small cryptic plasmid from <em>Ruminobacter amylophilus <\/em>NIAH-3 possesses functional mobilization properties. FEMS Microbiol. Lett. <strong>181:<\/strong> 41-48. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10564787?dopt=Abstract\">10564787<\/a>.<\/p>\n<p><strong>Kageyama, A., Benno, Y., and Nakase, T.<\/strong> 1999. Phylogenetic and phenotypic evidence of <em>Eubacterium aerofaciens<\/em> to the genus <em>Collinsella<\/em> as <em>Collinsella aerofaciens<\/em> gen. nov., comb. nov. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 557-565. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10319476?dopt=Abstract\">10319476<\/a>.<\/p>\n<p><strong>Yoon, J.-H., Cho, Y.-G, Lee, S. T., Suzuki, K., Nakase, T., and Park, Y.-H.<\/strong> 1999. <em>Nocardioides nitrophenolicus<\/em> sp. nov., a <em>p<\/em>-nitrophenol-degrading bacterium. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 675-680. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10319490?dopt=Abstract\">10319490<\/a>.<\/p>\n<p><strong>Park, Y.-H., Yoon, J.-H., Shin, Y. K., Suzuki, K., Kudo, T., Seino, A., Kim, H.-J., Lee, J.-S., and Lee, S. T.<\/strong> 1999. Classification of &#8216;<em>Nocardioides fulvus<\/em>&#8216; IFO 14399 and <em>Nocardioides<\/em> sp. ATCC 39419 in <em>Kribbella<\/em> gen. nov., as <em>Kribbella flavida<\/em> sp. nov. and <em>Kribbella sandramycini<\/em> sp. nov. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 743-752. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10319498?dopt=Abstract\">10319498<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K., Sanchez, P. C., and Nakase, T.<\/strong> 1999. <em>Caldivirga maquilingensis<\/em> gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1157-1163. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10425774?dopt=Abstract\">10425774<\/a>.<\/p>\n<p><strong>Cai, Y., Okada, H., Mori, H., Benno, Y., and Nakase, T. <\/strong>1999. <em>Lactobacillus paralimentarius<\/em> sp. nov., isolated from sourdough. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1451-1455. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10555326?dopt=Abstract\">10555326<\/a>.<\/p>\n<p><strong>Kageyama, A., Benno, Y., and Nakase, T.<\/strong> 1999. Phylogenetic evidence for the transfer of <em>Eubacterium lentum<\/em> to the genus <em>Eggerthella<\/em> as <em>Eggerthella lenta<\/em> gen. nov., comb. nov. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1725-1732. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10555354?dopt=Abstract\">10555354<\/a>.<\/p>\n<p><strong>Nakajima, Y., Kitpreechavanich, V., Suzuki, K., and Kudo, T.<\/strong> 1999. <em>Microbispora corallina<\/em> sp. nov., a new species of the genus <em>Microbispora<\/em> isolated from Thai soil. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1761-1767. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10555358?dopt=Abstract\">10555358<\/a>.<\/p>\n<p><strong>Kudo, T., Nakajima, Y., and Suzuki, K.<\/strong> 1999. <em>Catenuloplanes crispus<\/em> (Petrolini <em>et al.<\/em> 1993) comb. nov.: incorporation of the genus <em>Planopolyspora<\/em> Petrolini 1993 into the genus <em>Catenuloplanes<\/em> Yokota <em>et al.<\/em> 1993 with an amended description of the genus <em>Catenuloplanes<\/em>. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1853-1860. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10555369?dopt=Abstract\">10555369<\/a>.<\/p>\n<p><strong>Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K.<\/strong> 1999. <em>Kluyveromyces nonfermentans<\/em> sp. nov., a new yeast species isolated from the deep sea. Int. J. Syst. Bacteriol. <strong>49:<\/strong> 1899-1905. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10555374?dopt=Abstract\">10555374<\/a>.<\/p>\n<p><strong>Ueda, K., Seki, T., Kudo, T., Yoshida, T., and Kataoka, M.<\/strong> 1999. Two distinct mechanisms cause heterogeneity of 16S rRNA. J. Bacteriol. <strong>181:<\/strong> 78-82. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9864315?dopt=Abstract\">9864315<\/a>.<\/p>\n<p><strong>Ogata, K., Aminov, R. I., Tajima, K., Nakamura, M., Matsui, H., Nagamine, T., and Benno, Y.<\/strong> 1999. Construction of <em>Prevotella ruminicola-Escherichia coli<\/em> shuttle vector pRAM45 and transformation of <em>P. ruminicola<\/em> strains by electroporation. J. Biosci. Bioeng. <strong>88:<\/strong> 316-318. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16232618?dopt=Abstract\">16232618<\/a>.<\/p>\n<p><strong>Cai, Y., Benno, Y., Ogawa, M., and Kumai, S.<\/strong> 1999. Effect of applying lactic acid bacteria isolated from forage crops on fermentation characteristics and aerobic deterioration of silage. J. Dairy Sci. <strong>82:<\/strong> 520-526. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10194670?dopt=Abstract\">10194670<\/a>.<\/p>\n<p><strong>Uchida, K., Kudo, T., Suzuki, K., and Nakase, T.<\/strong> 1999. A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 49-56. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501387?dopt=Abstract\">12501387<\/a>.<\/p>\n<p><strong>Tamura, M., Hamamoto, M., Ca&ntilde;ete-Gibas, C. F, Sugiyama, J., and Nakase, T.<\/strong> 1999. Genetic relatedness among species in <em>Aspergillus<\/em> section <em>Clavati<\/em> as measured by electrophoretic comparison of enzymes, DNA base composition, and DNA-DNA hybridization. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 77-83. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501391?dopt=Abstract\">12501391<\/a>.<\/p>\n<p><strong>Cai, Y., Suyanandana, P., Saman, P., and Benno, Y.<\/strong> 1999. Classification and characterization of lactic acid bacteria isolated from the intestines of common carp and freshwater prawns. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 177-184. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501375?dopt=Abstract\">12501375<\/a>.<\/p>\n<p><strong>Sugita, T. and Nakase, T.<\/strong> 1999. Nonuniversal usage of the leucine CUG codon in yeasts: investigation of basidiomycetous yeast. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 193-197. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501377?dopt=Abstract\">12501377<\/a>.<\/p>\n<p><strong>Suzuki, M., Suh, S, -O., Sugita, T., and Nakase, T.<\/strong> 1999. A phylogenetic study on galactose-containing <em>Candida<\/em> species based on 18S ribosomal DNA sequences. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 229-238. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501365?dopt=Abstract\">12501365<\/a>.<\/p>\n<p><strong>Suzuki, M. and Nakase, T.<\/strong> 1999. A phylogenetic study of ubiquinone Q-8 species of the genera <em>Candida<\/em>, <em>Pichia<\/em>, and <em>Citeromyces<\/em> based on 18S ribosomal DNA sequence divergence. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 239-246. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501366?dopt=Abstract\">12501366<\/a>.<\/p>\n<p><strong>Suzuki, K., Suzuki, M., Sasaki, J., Park, Y.-H., and Komagata, K.<\/strong> 1999. <em>Leifsonia<\/em> gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate &quot;<em>Corynebacterium aquaticum<\/em>&quot; Leifson 1962 and <em>Clavibacter xyli<\/em> subsp. <em>cynodontis<\/em> Davis et al. 1984. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 253-262. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501368?dopt=Abstract\">12501368<\/a>.<\/p>\n<p><strong>Kageyama, A., Zama, M., Sugama, S., Yamasato, K., and Benno, Y.<\/strong> 1999. Assignment of the six solvent-producing <em>Clostridium<\/em> spp. to <em>Clostridium beijerinckii<\/em> based on DNA-DNA reassociation. J. Gen. Appl. Microbiol. <strong>45:<\/strong> 263-267. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501369?dopt=Abstract\">12501369<\/a>.<\/p>\n<p><strong>Isogai, H., Kosako, Y., Benno, Y., and Isogai, E.<\/strong> 1999. Ecology of genus <em>Porphyromonas<\/em> in canine periodontal disease. Zentralbl. Veterinarmed. B <strong>46:<\/strong> 467-473. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10528543?dopt=Abstract\">10528543<\/a>.<\/p>\n<p><strong>Sugita, T., Kagaya, K., Takashima, M., Suzuki, M., Fukazawa, Y., and Nakase, T.<\/strong> 1999. A clinical isolate of <em>Candida palmioleophila<\/em> formerly identified as <em>Torulopsis candida<\/em>. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) <strong>40:<\/strong> 21-25. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9929578?dopt=Abstract\">9929578<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 1999. Molecular phylogeny of the genus <em>Cryptococcus<\/em> and related species based on the sequences of 18S rDNA and internal transcribed spacer regions. Microbiol. Cult. Collect. <strong>15:<\/strong> 35-47. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No15_2\/No15_2_35.pdf\">PDF<\/a>.<\/p>\n<p><strong>Mikata, K., Ueda-Nishimura, K., Goto, S., Kurtzman, C. P., Suzuki, M., Yarrow, D., and Nakase, T.<\/strong> 1999. Reidentification of yeast strains deposited as <em>Candida agrestis<\/em>, with a description of <em>Candida kofuensis<\/em> sp. nov. Microbiol. Cult. Collect. <strong>15:<\/strong> 49-57. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No15_2\/No15_2_49.pdf\">PDF<\/a>.<\/p>\n<p><strong>Yabuuchi, E., Kosako, Y., Naka, T., Suzuki, S., and Yano, I.<\/strong> 1999. Proposal of <em>Sphingomonas suberifaciens<\/em> (van Bruggen, Jochimsen and Brown 1990) comb. nov., <em>Sphingomonas natatoria<\/em> (Sly 1985) comb. nov., <em>Sphingomonas ursincola<\/em> (Yurkov et al. 1997) comb. nov., and emendation of the genus <em>Sphingomonas<\/em>. Microbiol. Immunol. <strong>43:<\/strong> 339-349. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10385200?dopt=Abstract\">10385200<\/a>.<\/p>\n<p><strong>Kageyama, A., Benno, Y., and Nakase, T.<\/strong> 1999. Phylogenic and phenotypic evidence for the transfer of <em>Eubacterium fossor<\/em> to the genus <em>Atopobium<\/em> as <em>Atopobium fossor<\/em> comb. nov. Microbiol. Immunol. <strong>43:<\/strong> 389-395. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10449244?dopt=Abstract\">10449244<\/a>.<\/p>\n<p><strong>Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., Benno, Y., and Nakase, T.<\/strong> 1999. Detection of <em>Treponema socranskii<\/em> associated with human periodontitis by PCR. Microbiol. Immunol. <strong>43:<\/strong> 485-490. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10449255?dopt=Abstract\">10449255<\/a>.<\/p>\n<p><strong>Sakamoto, M., Koseki, T., Umeda, M., Ishikawa, I., Benno, Y., and Nakase, T.<\/strong> 1999. Phylogenetic analysis of saccharolytic oral treponemes isolated from human subgingival plaque. Microbiol. Immunol. <strong>43:<\/strong> 711-716. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10529113?dopt=Abstract\">10529113<\/a>.<\/p>\n<p><strong>Hamana, K., Hamana, H., Shinozawa, T., Niitsu, M., Samejima, K., and Itoh, T.<\/strong> 1999. Polyamines of the thermophilic eubacteria belonging to the genera <em>Aquifex<\/em>, <em>Thermodesulfobacterium<\/em>, <em>Thermus<\/em> and <em>Meiothermus<\/em>, and the thermophilic archaebacteria belonging to the genera <em>Sulfurisphaera<\/em>, <em>Sulfophobococcus<\/em>, <em>Stetteria<\/em>, <em>Thermocladium<\/em>, <em>Pyrococcus<\/em>, <em>Thermococcus<\/em>, <em>Methanopyrus<\/em> and <em>Methanothermus<\/em>. Microbios <strong>97:<\/strong> 117-130.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Sugita, T., Suh, S.-O., and Komagata, K.<\/strong> 1999. Three new species of anamorphic yeasts phenotypically and phylogenetically related to <em>Candida mesenterica<\/em>: the description of <em>Candida fungicola<\/em> sp. nov., <em>Candida sagamina<\/em> sp. nov., and <em>Candida fukazawae<\/em> sp. nov. isolated from fruit bodies of mushrooms. Mycoscience <strong>40:<\/strong> 465-476. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02461023\">10.1007\/BF02461023<\/a>.<\/p>\n<p><strong>Sugita, T., Ca&ntilde;ete-Gibas, C. F., Takashima, M., and Nakase, T.<\/strong> 1999. Three new species of <em>Bullera<\/em> isolated from leaves in the Ogasawara Islands. Mycoscience <strong>40:<\/strong> 491-501. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02461026\">10.1007\/BF02461026<\/a>.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., and Nakase, T.<\/strong> 1999. Molecular phylogenetic studies on the <em>Bensingtonia<\/em> strain isolated from Yunnan, China. Mycosystema <strong>18:<\/strong> 254-258.<\/p>\n<p><strong>Hoshino, T., Tojo, M., Okada, G., Kanda, H., Ohgiya, S., and Ishizaki, K.<\/strong> 1999. A filamentous fungus, <em>Pythium ultimum<\/em> Trow var. <em>ultimum<\/em>, isolated from moribund moss colonies from Svalbard, northern islands of Norway. Polar Biosci. <strong>12:<\/strong> 68-75.<\/p>\n<p><strong>Sugita, T. and Nakase, T.<\/strong> 1999. Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus <em>Candida<\/em>. Syst. Appl. Microbiol. <strong>22:<\/strong> 79-86. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10188281?dopt=Abstract\">10188281<\/a>.<\/p>\n<p><strong>Benno, Y.<\/strong> 1999. Probiotic lactic acid bacteria for functional food. Bioind. News <strong>12:<\/strong> 7-10.<\/p>\n<p><strong>Arie, T., Kobayashi, Y., Kono, Y., Okada, G., and Yamaguchi, I.<\/strong> 1999. Control of clubroot of crucifers by <em>Phoma glomerata<\/em> and its product epoxydon. Pestic Sci. <strong>55:<\/strong> 602-604. DOI: <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/%28SICI%291096-9063%28199905%2955%3A5%3C602%3A%3AAID-PS964%3E3.0.CO%3B2-C\">10.1002\/(SICI)1096-9063(199905)55:5<602::AID-PS964>3.0.CO;2-C<\/a>.<\/p>\n<p><strong>Salminen, S., Ouwehand, A., Benno, Y., and Lee, Y. K.<\/strong> 1999. Probiotics: how should they be defined? Trends Food Sci. Technol. <strong>10:<\/strong> 107-110. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0924-2244(99)00027-8\">10.1016\/S0924-2244(99)00027-8<\/a>.<\/p>\n<p><strong>Benno, Y.<\/strong> 1999. The concept of functional foods, <em>In:<\/em> International Dairy Foundation (ed.), Milk and Health, pp. 114-119, International Dairy Books, Denmark.<\/p>\n<p><strong>Bai, F.-Y., Takashima, M., and Nakase, T.<\/strong> 1999. The discovery of new ballistoconidia-forming yeast taxa from Yunnan, China, and its implication in yeast species diversity, <em>In:<\/em> Proceedings of the Second International Symposium on the Geoenvironmental Changes and Biodiversity in Northeast Asia, pp. 66-68, Tongji University, Shanghai.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1998\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1997\">1997<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1998<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Hamana, K., Hamana, H., and Itoh, T.<\/strong> 1998. Polyamine analysis of extremely halophilic archaebacteria. Ann. Gunma Health Sci. <strong>19:<\/strong> 1-4.<\/p>\n<p><strong>Nishihara, H., Yaguchi, T., Chung, S. Y., Suzuki, K., Yanagi, M., Yamasato, K., Kodama, T., and Igarashi, Y.<\/strong> 1998. Phylogenetic position of an obligately chemoautotrophic, marine hydrogen-oxidizing bacterium, <em>Hydrogenovibrio marinus<\/em>, on the basis of 16S rRNA gene sequences and two form I RuBisCO gene sequences. Arch. Microbiol. <strong>169:<\/strong> 364-368. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9531639?dopt=Abstract\">9531639<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K., and Nakase, T.<\/strong> 1998. Occurrence of introns in the 16S rRNA genes of members of the genus <em>Thermoproteus<\/em>. Arch. Microbiol. <strong>170:<\/strong> 155-161. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9683654?dopt=Abstract\">9683654<\/a>.<\/p>\n<p><strong>Tomita, S., Shirasaki, N., Hayashizaki, H., Matsuyama, J., Benno, Y., and Kiyosawa, I. <\/strong>1998. Binding characteristics of bovine lactoferrin to the cell surface of <em>Clostridium<\/em> species and identification of the lactoferrin-binding protein. Biosci. Biotechnol. Biochem. <strong>62:<\/strong> 1476-1482. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9757551?dopt=Abstract\">9757551<\/a>.<\/p>\n<p><strong>Okada, G., Seifert, K. A., Takematsu, A., Yamaoka, Y., Miyazaki, S., and Tubaki, K.<\/strong> 1998. A molecular phylogenetic reappraisal of the <em>Graphium<\/em> complex based on 18S rDNA sequences. Can. J. Bot. <strong>76:<\/strong> 1495-1506. DOI: <a href=\"https:\/\/doi.org\/10.1139\/b98-089\">10.1139\/b98-089<\/a>.<\/p>\n<p><strong>Goris, J., Suzuki, K., De Vos, P., Nakase, T., and Kersters, K.<\/strong> 1998. Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can. J. Microbiol. <strong>44:<\/strong> 1148-1153. DOI: <a href=\"https:\/\/doi.org\/10.1139\/w98-118\">10.1139\/w98-118<\/a>.<\/p>\n<p><strong>Aminov, R. I., Tajima, K., Ogata, K., Nagamine, T., Sugiura, M., and Benno, Y.<\/strong> 1998. Transcriptional regulation of the <em>Prevotella ruminicola<\/em> <em>recA<\/em> gene. Curr. Microbiol. <strong>36:<\/strong> 259-265. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9541560?dopt=Abstract\">9541560<\/a>.<\/p>\n<p><strong>Cai, Y., Benno, Y., Ogawa., M., Ohmomo, S., Kumai, S., and Nakase, T.<\/strong> 1998. Influence of <em>Lactobacillus<\/em> spp. from an inoculant and of <em>Weissella<\/em> and <em>Leuconostoc<\/em> spp. from forage crops on silage fermentation. Environ. Appl. Microbiol. <strong>64:<\/strong> 2982-2987. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9687461?dopt=Abstract\">9687461<\/a>.<\/p>\n<p><strong>Tsuruta, S., Takaya, N., Zhang, L., Shoun, H., Kimura, K., Hamamoto, M., and Nakase, T.<\/strong> 1998. Denitrification by yeasts and occurrence of cytochrome P450nor in <em>Trichosporon cutaneum<\/em>. FEMS Microbiol. Lett. <strong>168:<\/strong> 105-110. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9812370?dopt=Abstract\">9812370<\/a>.<\/p>\n<p><strong>Cai, Y. and Ogawa, M.<\/strong> 1998. Effect of ammonium tetraformate on the aerobic deterioration of corn silage. Grassland Sci. <strong>44:<\/strong> 90-92.<\/p>\n<p><strong>Hamamoto, M., Kuroyanagi, T., and Nakase, T.<\/strong> 1998. <em>Fellomyces ogasawarensis<\/em> sp. nov. and <em>Fellomyces distylii <\/em>sp. nov., yeasts isolated from a plant in Japan. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 287-293. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9542099?dopt=Abstract\">9542099<\/a>.<\/p>\n<p><strong>Sasaki, J., Chijimatsu, M., and Suzuki, K.<\/strong> 1998. Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of <em>Clavibacter toxicus<\/em> as <em>Rathayibacter toxicus<\/em> comb. nov. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 403-410. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9731278?dopt=Abstract\">9731278<\/a>.<\/p>\n<p><strong>Itoh, T., Suzuki, K., and Nakase, T.<\/strong> 1998. <em>Thermocladium modestius<\/em> gen. nov., sp. nov., a new genus of rod-shaped, extremely thermophilic crenarchaeote. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 879-887. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9734041?dopt=Abstract\">9734041<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 1998. <em>Bullera penniseticola<\/em> sp. nov. and <em>Kockovaella sacchari<\/em> sp. nov., two new yeast species isolated from plants in Thailand. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 1025-1030. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9734059?dopt=Abstract\">9734059<\/a>.<\/p>\n<p><strong>Kudo, T., Matsushima, K., Itoh, T., Sasaki, J., and Suzuki, K.<\/strong> 1998. Description of four new species of the genus <em>Kineosporia<\/em>: <em>Kineosporia succinea<\/em> sp. nov., <em>Kineosporia rhizophila <\/em>sp. nov., <em>Kineosporia mikuniensis<\/em> sp. nov. and <em>Kineosporia rhamnosa<\/em> sp. nov., isolated from plant samples, and amended description of the genus <em>Kineosporia<\/em>. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 1245-1255. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9828426?dopt=Abstract\">9828426<\/a>.<\/p>\n<p><strong>Sugita, T. and Nakase, T.<\/strong> 1998. <em>Trichosporon japonicum<\/em> sp. nov. isolated from the air. Int. J. Syst. Bacteriol. <strong>48:<\/strong> 1425-1429. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9828446?dopt=Abstract\">9828446<\/a>.<\/p>\n<p><strong>Sakamoto, M., Tano, Y., Uchimura, T., and Komagata, K.<\/strong> 1998. Aerobic growth of some lactic acid bacteria enable by the external addition of peroxidase (horseradish) to the culture medium. J. Ferment. Bioeng. <strong>85:<\/strong> 627-629. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0922-338X(98)80017-2\">10.1016\/S0922-338X(98)80017-2<\/a>.<\/p>\n<p><strong>Kawasaki, S., Nakagawa, T., Nishiyama, Y., Benno, Y., Uchimura, T., Komagata, K., Kozaki, M., and Niimura, Y.<\/strong> 1998. Effect of oxygen on the growth of <em>Clostridium butyricum<\/em> (type species of the genus <em>Clostridium<\/em>), and the distribution of enzymes for oxygen and for active oxygen species in clostridia. J. Ferment. Bioeng. <strong>86:<\/strong> 368-372. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0922-338X(99)89006-0\">10.1016\/S0922-338X(99)89006-0<\/a>.<\/p>\n<p><strong>Ca&ntilde;ete-Gibas, C. F., Takashima, M., Sugita, T., and Nakase, T.<\/strong> 1998. Three new species of <em>Kockovaella<\/em> isolated from plants collected in the Ogasawara Islands. J. Gen. Appl. Microbiol. <strong>44:<\/strong> 11-18. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501288?dopt=Abstract\">12501288<\/a>.<\/p>\n<p><strong>Cai, Y., Benno, Y., Takeda, A., Yoshida, T., Itaya, T., and Nakase, T.<\/strong> 1998. Characterization of <em>Leuconostoc<\/em> species isolated from vacuum-packaged ham. J. Gen. Appl. Microbiol. <strong>44:<\/strong> 153-159. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501283?dopt=Abstract\">12501283<\/a>.<\/p>\n<p><strong>Cai, Y., Benno, Y., Nakase, T., and Oh, T. K.<\/strong> 1998. Specific probiotic characterization of <em>Weissella hellenica<\/em> DS-12 isolated from flounder intestine. J. Gen. Appl. Microbiol. <strong>44:<\/strong> 311-316. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501410?dopt=Abstract\">12501410<\/a>.<\/p>\n<p><strong>Suzuki, M. and Nakase, T.<\/strong> 1998. Cellular neutral sugar compositions and ubiquinone systems of the genus <em>Candida<\/em>. Microbiol. Cult. Collect. <strong>14:<\/strong> 49-62. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No14_2\/No14_2_49.pdf\">PDF<\/a>.<\/p>\n<p><strong>Yabuuchi, E., Kawamura, Y., Kosako, Y., and Ezaki, T.<\/strong> 1998. Emendation of genus <em>Achromobacter<\/em> and <em>Achromobacter xylosoxidans<\/em> (Yabuuchi and Yano) and proposal of <em>Achromobacter ruhlandii<\/em> (Packer and Vishniac) comb. nov., <em>Achromobacter piechaudii<\/em> (Kiredjian et al.) comb. nov., and <em>Achromobacter xylosoxidans<\/em> subsp. <em>denitrificans<\/em> (R&#252;ger and Tan) comb. nov. Microbiol. Immunol. <strong>42:<\/strong> 429-438. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9688077?dopt=Abstract\">9688077<\/a>.<\/p>\n<p><strong>Hamana, K., Niitsu, M., Samejima, K., Itoh, T., Hamana, H., and Shinozawa, T.<\/strong> 1998. Polyamines of the thermophilic eubacteria belonging to the genera <em>Thermotoga<\/em>, <em>Thermodesulfovibrio<\/em>, <em>Thermoleophilum<\/em>, <em>Thermus<\/em>, <em>Rhodothermus<\/em> and <em>Meiothermus<\/em>, and the thermophilic archaebacteria belonging to the genera <em>Aeropyrum<\/em>, <em>Picrophilus<\/em>, <em>Methanobacterium<\/em> and <em>Methanococcus<\/em>. Microbios <strong>94:<\/strong> 7-21.<\/p>\n<p><strong>Sugita, T. and Nakase, T.<\/strong> 1998. Molecular phylogenetic study of the basidiomycetous anamorphic yeast genus <em>Trichosporon<\/em> and related taxa based on small subunit ribosomal DNA sequences. Mycoscience <strong>39:<\/strong> 7-13. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02461572\">10.1007\/BF02461572<\/a>.<\/p>\n<p><strong>Okada, G., Takematsu, A., Gandjar, I., and Nakase, T.<\/strong> 1998. Morphology and molecular phylogeny of <em>Tretopileus sphaerophorus<\/em>, a synnematous hyphomycete with basidiomycetous affinities. Mycoscience <strong>39:<\/strong> 21-30. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02461574\">10.1007\/BF02461574<\/a>.<\/p>\n<p><strong>Nagai, K., Suzuki, K., and Okada, G.<\/strong> 1998. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi II: fungal flora in two limestone caves in Japan. Mycoscience <strong>39:<\/strong> 293-298. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02464011\">10.1007\/BF02464011<\/a>.<\/p>\n<p><strong>Arie, T., Kobayashi, Y., Okada. G., Kono, Y., and Yamaguchi, I.<\/strong> 1998. Control of soilborne clubroot disease of cruciferous plants by epoxydon from <em>Phoma glomerata<\/em>. Plant Pathol. <strong>47:<\/strong> 743-748. DOI: <a href=\"https:\/\/doi.org\/10.1046\/j.1365-3059.1998.00298.x\">10.1046\/j.1365-3059.1998.00298.x<\/a>.<\/p>\n<p><strong>Takizawa, S., Kojima, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T.<\/strong> 1998. The composition of the <em>Lactobacillus<\/em> flora in kefir grains. Syst. Appl. Microbiol. <strong>21:<\/strong> 121-127. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0723-2020(98)80015-5\">10.1016\/S0723-2020(98)80015-5<\/a>.<\/p>\n<p><strong>Ogata, K., Aminov, R. I., Nagamine, T., Tajima, K., Nakamura, M., Matsui, H., and Benno, Y.<\/strong> 1998. Genomic plasticity of <em>Prevotella ruminicola<\/em> strains is caused by variable location of cellulase genes, <em>In:<\/em> Genetics, Biochemistry and Ecology of Cellulose Degradation, pp. 785-789, Uni Publishers Co., Ltd., Tokyo.<\/p>\n<p><strong>Salminen, S., Deighton, M., Benno, Y., and Gorbach, S.<\/strong> 1998. Lactic acid bacteria in health and disease, <em>In:<\/em> Salminen, S. and von Wright (eds.), Lactic Acid Bacteria, pp. 211-154, Maecel Dekker, New York.<\/p>\n<p><strong>Roeijmans, H., Prillinger, H., Umile, C., Sugiyama, J., Nakase, T., and Boekhout, T.<\/strong> 1998. Analysis of carbohydrate composition of cell walls and extracellular carbohydrates, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 103-105, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50016-2\">10.1016\/B978-044481312-1\/50016-2<\/a>.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Phaff, H. J., and Kurtzman, C. P.<\/strong> 1998. <em>Debaryomyces<\/em> Lodder &amp; Kreger-van Rij nom. cons, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 157-173, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50030-7\">10.1016\/B978-044481312-1\/50030-7<\/a>.<\/p>\n<p><strong>Sugiyama, J. and Hamamoto, M.<\/strong> 1998. <em>Erythrobasidium<\/em> Hamamoto, Sugiyama &amp; Komagata, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 654-655, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50086-1\">10.1016\/B978-044481312-1\/50086-1<\/a>.<\/p>\n<p><strong>Boekhout, T. and Nakase, T.<\/strong> 1998. <em>Bensingtonia<\/em> Ingold emend. Nakase &amp; Boekhout, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 723-730, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50097-6\">10.1016\/B978-044481312-1\/50097-6<\/a>.<\/p>\n<p><strong>Boekhout, T. and Nakase, T.<\/strong> 1998. <em>Bullera<\/em> Derx, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 731-741, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50098-8\">10.1016\/B978-044481312-1\/50098-8<\/a>.<\/p>\n<p><strong>Nakase, T. and Banno, I.<\/strong> 1998. <em>Kockovaella<\/em> Nakase, Banno &amp; Y. Yamada, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 777-779, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50103-9\">10.1016\/B978-044481312-1\/50103-9<\/a>.<\/p>\n<p><strong>Boekhout, T. and Nakase, T.<\/strong> 1998. <em>Sporobolomyces<\/em> Kluyver &amp; van Niel, <em>In:<\/em> Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th ed.), pp. 828-843, Elsevier, Amsterdam. DOI: <a href=\"https:\/\/doi.org\/10.1016\/B978-044481312-1\/50111-8\">10.1016\/B978-044481312-1\/50111-8<\/a>.<\/p>\n<p><strong>Benno, Y.<\/strong> 1998. Probiotic lactic acid bacteria for functional food, <em>In:<\/em> Probiotic Researches on Lactic Acid Bacteria, pp. 14-16, The Korean Society for Applied Microbiology, Seoul.<\/p>\n<p><strong>Benno, Y.<\/strong> 1998. The concept of functional food, <em>In:<\/em> Proceedings of the 25th International Dairy Congress, pp. 15-16, International Dairy Books, Arhus.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1997\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1996\">1996<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<\/tr>\n<tr>\n<td colspan=\"4\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1997<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Nagamine, T., Aminov, R. I., Sugiura, K., Ogata, K., Tajima, K., and Benno, Y.<\/strong> 1997. Method for preparation of RNA from <em>Ruminococcus albus<\/em>. BioTechniques <strong>22:<\/strong> 406-407. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9067009?dopt=Abstract\">9067009<\/a>.<\/p>\n<p><strong>Isogai, E., Isogai, H., Hirose, K., Mimura, H., Kimura, K., Hayashi, S., Hayashi, M., Fujii, N., and Benno, Y.<\/strong> 1997. Platelet responses after stimulation with lipopolysaccharide from <em>Porphyromonas gingivalis<\/em>. Biosci. Microflora <strong>16:<\/strong> 79-82. DOI: <a href=\"https:\/\/doi.org\/10.12938\/bifidus1996.16.79\">10.12938\/bifidus1996.16.79<\/a>.<\/p>\n<p><strong>Ogata, K., Aminov, R. I., Nagamine, T., Sugiura, M., Tajima, K., Mitumori, M., Sekizaki, T., Minato, H., and Benno, Y.<\/strong> 1997. Construction of a <em>Fibrobacter succinogenes<\/em> genomic map and demonstration of diversity at the genomic level. Curr. Microbiol. <strong>35:<\/strong> 22-27. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9175555?dopt=Abstract\">9175555<\/a>.<\/p>\n<p><strong>Golubev, W. and Nakase, T.<\/strong> 1997. Mycocinogeny in the genus <em>Bullera<\/em>: taxonomic specificity of sensitivity to the mycocin produced by <em>Bullera sinensis<\/em>. FEMS Microbiol. Lett. <strong>146:<\/strong> 59-64. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8997707?dopt=Abstract\">8997707<\/a>.<\/p>\n<p><strong>Kataoka, M., Ueda, K., Kudo, T., Seki, T., and Yoshida, T.<\/strong> 1997. Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus <em>Streptomyces<\/em>. FEMS Microbiol. Lett. <strong>151:<\/strong> 249-255. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9244758?dopt=Abstract\">9244758<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 1997. A phylogenetic analysis of three group I introns found in the nuclear small subunit ribosomal RNA gene of the ballistoconidiogenous anamorphic yeast-like fungus <em>Tilletiopsis flava<\/em>. Genes Genet. Syst. <strong>72:<\/strong> 205-214. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9418260?dopt=Abstract\">9418260<\/a>.<\/p>\n<p><strong>Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T., and Komagata, K.<\/strong> 1997. <em>Cryobacterium psychrophilum <\/em>gen. nov., sp. nov., nom. rev., comb. nov., an obligately psychrophilic actinomycete to accommodate &quot;<em>Curtobacterium psychrophilum<\/em>&quot; Inoue and Komagata 1976. Int. J. Syst. Bacteriol. <strong>47:<\/strong> 474-478. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9103638?dopt=Abstract\">9103638<\/a>.<\/p>\n<p><strong>Yanagida, F., Suzuki, K., Kozaki, M., and Komagata, K.<\/strong> 1997. Proposal of <em>Sporolactobacillus nakayamae<\/em> subsp. <em>nakayamae<\/em> sp. nov., subsp. nov., <em>Sporolactobacillus nakayamae<\/em> subsp. <em>racemicus<\/em> subsp. nov., <em>Sporolactobacillus terrae<\/em> sp. nov., <em>Sporolactobacillus kofuensis<\/em> sp. nov., and <em>Sporolactobacillus lactosus<\/em> sp. nov. Int. J. Syst. Bacteriol. <strong>47:<\/strong> 499-504. DOI: <a href=\"https:\/\/doi.org\/10.1099\/00207713-47-2-499\">10.1099\/00207713-47-2-499<\/a>.<\/p>\n<p><strong>Kakeya, H., Zhang, H., Kobinata, K., Onose, R., Onozawa, C., Kudo, T., and Osada, H.<\/strong> 1997. Cytotrienin A, a novel apoptosis inducer in human leikemia HL-60 cells. J. Antibiot. <strong>50:<\/strong> 370-372. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9186568?dopt=Abstract\">9186568<\/a>.<\/p>\n<p><strong>Sugawara, T., Tanaka, A., Nagai, K., Suzuki, K., and Okada, G.<\/strong> 1997. New members of the trichothecene family. J. Antibiot. <strong>50:<\/strong> 778-780. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9360625?dopt=Abstract\">9360625<\/a>.<\/p>\n<p><strong>Cai, Y., Ohmomo, S., Ogawa, M., and Kumai, S.<\/strong> 1997. Effect of NaCl-tolerant lactic acid bacteria and NaCl on the fermentation characteristics and aerobic stability of silage. J. Appl. Microbiol. <strong>83:<\/strong> 307-313. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9351210?dopt=Abstract\">9351210<\/a>.<\/p>\n<p><strong>Sugita, T., Takashima, M., Hamamoto, M., Budhaka, P., and Nakase, T.<\/strong> 1997. <em>Bensingtonia sakaguchii<\/em> sp. nov. isolated from a leaf of <em>Bischofia javanica<\/em> in the Ogasawara Islands. J. Gen. Appl. Microbiol. <strong>43:<\/strong> 231-235. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501324?dopt=Abstract\">12501324<\/a>.<\/p>\n<p><strong>Byun, J. W., Park, S. C., Benno, Y., and Oh, T. K.<\/strong> 1997. Probiotic effect of <em>Lactobacillus<\/em> sp. DS-12 in flounder (<em>Paralichthys olivaceus<\/em>). J. Gen. Appl. Microbiol. <strong>43:<\/strong> 305-308. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501318?dopt=Abstract\">12501318<\/a>.<\/p>\n<p><strong>Harada, H., Oyaizu, H., Kosako, Y., and Ishikawa, H.<\/strong> 1997. <em>Erwinia aphidicola<\/em>, a new species isolated from pea aphid, <em>Acyrthosiphon pisum<\/em>. J. Gen. Appl. Microbiol. <strong>43:<\/strong>  349-354. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12501306?dopt=Abstract\">12501306<\/a>.<\/p>\n<p><strong>Mikata, K. and Nakase, T.<\/strong> 1997. Surface structure of ascospores of genus <em>Nadsonia<\/em> Sydow. Microbiol. Cult. Collect. <strong>13:<\/strong> 97-102. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No13_2\/No13_2_97.pdf\">PDF<\/a>.<\/p>\n<p><strong>Imai, T., Yazawa, K., Tanaka, Y., Mikami, Y., Kudo, T., Suzuki., K., Ando., A., Nagata, Y., and Graefe, U.<\/strong> 1997. Productivity of antimicrobial substances in pathogenic actinomycetes <em>Nocardia brasiliensis<\/em>. Microbiol. Cult. Collect. <strong>13:<\/strong> 103-108. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No13_2\/No13_2_103.pdf\">PDF<\/a>.<\/p>\n<p><strong>Nakase, T. and Suzuki, M.<\/strong> 1997. <em>Candida gotoi<\/em>, new species of anamorphic yeast isolated from insect frass in bark of Japanese maple. Microbiol. Cult. Collect. <strong>13:<\/strong> 109-112. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No13_2\/No13_2_109.pdf\">PDF<\/a>.<\/p>\n<p><strong>Golubev, W. I., Ikeda, R., Shinoda, T., and Nakase, T.<\/strong> 1997. Antifungal activity of <em>Bullera alba<\/em> (Hanna) Derx. Mycoscience <strong>38:<\/strong> 25-29. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02464965\">10.1007\/BF02464965<\/a>.<\/p>\n<p><strong>Okada, G., Takematsu, A., and Takamura, Y.<\/strong> 1997. Phylogenetic relationships of the hyphomycete genera <em>Chaetopsina<\/em> and <em>Kionochaeta<\/em> based on 18S rDNA sequences. Mycoscience <strong>38:<\/strong> 409-420. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02461681\">10.1007\/BF02461681<\/a>.<\/p>\n<p><strong>Pulici, M., Sugawara, F., Koshino, H., Okada, G., Esumi, Y., Uzawa, J., and Yoshida, S.<\/strong> 1997. Metabolites of <em>Pestalotiopsis<\/em> spp., endophytic fungi of <em>Taxus brevifolia<\/em>. Phytochemistry <strong>46:<\/strong> 313-319. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0031-9422(97)00285-9\">10.1016\/S0031-9422(97)00285-9<\/a>.<\/p>\n<p><strong>Hasegawa, H., Sung, J.-H., and Benno, Y.<\/strong> 1997. Role of human intestinal <em>Prevotella oris<\/em> in hydrolyzing Ginseng saponins. Planta Med. <strong>63:<\/strong> 436-440. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9342949?dopt=Abstract\">9342949<\/a>.<\/p>\n<p><strong>Benno, Y.<\/strong> 1997. Changes in intestinal flora, <em>In:<\/em> Mitsuoka, T. (ed.), Intestinal Flora and Immunity, pp. 23-34, Yakult Co. Ltd., Tokyo.<\/p>\n<p><strong>Nagamine, T., Aminov, R. I., Ogata, K., Sugiura, M., Tajima, K., and Benno, Y.<\/strong> 1997. Cloning of xylanase genes from <em>Ruminococcus albus<\/em> and chromosome mapping of <em>Fibrobacter succinogenes<\/em>, <em>In:<\/em> Onodera, R., Itabashi, H., Ushida, K., Yano, H., and Sasaki, Y. (eds.), Rumen Microbes and Digestive Physiology in Ruminants, pp. 59-67, Japan Scientific Societies Press, Tokyo.<\/p>\n<p><strong>Nagamine, T., Ogata, K., Tajima, K., Sugiura, M., and Benno, Y.<\/strong> 1997. Nucleotide sequence of a xylanase gene of <em>Fibrobacter succinogenes<\/em> S85, <em>In:<\/em> Present and Future of Rumen Research: Proceeding of Joint Rumen Symposium &#8217;97, p. 36, Japanese Society of Rumen Metabolisms and Physiology, Tokyo.<\/p>\n<p><strong>Ogata, K., Tajima, K., Aminov, R. I., Nagamine, T., Sugiura, M., and Benno, Y.<\/strong> 1997. Phenotypic, genotypic and genomic diversity of <em>Prevotella ruminicola<\/em> isolates, <em>In:<\/em> Present and Future of Rumen Research: Proceeding of Joint Rumen Symposium &#8217;97, p. 39, Japanese Society of Rumen Metabolisms and Physiology, Tokyo.<\/p>\n<p><strong>Sugiyama, J., Inamura, T., Okada, G., Sjamsuridzal, W., Kawasaki, H., and Hirata, A.<\/strong> 1997. Divergence and molecular evolution among basidiomycetous yeasts in the tropical and subtropical genus <em>Graphiola<\/em>, <em>In:<\/em> Martins, M. T., Sato, M. I. Z., Tiedje, J. M., Hagler, L. C. N., Doebereiner, J., and Sanchez, P. S. (eds.), Progress in Microbial Ecology: Proceedings of 7th International Symposium on Microbial Ecology, pp. 173-180, Brazilian Society for Microbiology, Sao Paulo.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1996\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1995\">1995<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<\/tr>\n<tr>\n<td colspan=\"3\" style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1996<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Hamamoto, M. and Nakase, T.<\/strong> 1996. Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. The genera <em>Bensingtonia<\/em> and <em>Bullera<\/em> with descriptions of five new species. Antonie van Leeuwenhoek <strong>69:<\/strong> 279-291. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8740911?dopt=Abstract\">8740911<\/a>.<\/p>\n<p><strong>Wang, J. Y., Suzuki, K., Miyazawa, T., Ueki, T., and Kouyama, T.<\/strong> 1996. Fluorescence polarization study on the dynamics and location of peroxidized fluorescent phospholipids in liposomes. Arch. Biochem. Biophys. <strong>330:<\/strong> 387-394. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8660669?dopt=Abstract\">8660669<\/a>.<\/p>\n<p><strong>Yamada, R., Ujiie, H., Kera, Y., Nakase, T., Kitagawa, K., Imamura, T., Arimoto, K., Takahashi, M., and Matsumura, Y.<\/strong> 1996. Purification and properties of D-aspartate oxidase from <em>Cryptococcus humicolus<\/em> UJ1. Biochim. Biophys. Acta <strong>1294:<\/strong> 153-158. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8645733?dopt=Abstract\">8645733<\/a>.<\/p>\n<p><strong>Fujita, T., Okamoto, M., Kosako, Y., and Okuhara, M.<\/strong> 1996. <em>Flexibacter japonensis<\/em> sp. nov., a new species that produces a novel inhibitor of human leukocyte elastase isolated from soil. Curr. Microbiol. <strong>33:<\/strong> 89-93. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8662178?dopt=Abstract\">8662178<\/a>.<\/p>\n<p><strong>Kosako, Y., Tamura, K., Sakazaki, R., and Miki, K.<\/strong> 1996. <em>Enterobacter kobei<\/em> sp. nov., a new species of the family <em>Enterobacteriaceae<\/em> resembling <em>Enterobacter cloacae<\/em>. Curr. Microbiol. <strong>33:<\/strong> 261-265. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8824173?dopt=Abstract\">8824173<\/a>.<\/p>\n<p><strong>Aminov, R. I., Nagamine, T., Ogata, K., Sugiura, M., Tajima, K., and Benno, Y.<\/strong> 1996. Cloning, sequencing and complementation analysis of the <em>recA<\/em> gene from <em>Prevotella ruminicola<\/em>. FEMS Microbiol. Lett. <strong>144:<\/strong> 53-59. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8870252?dopt=Abstract\">8870252<\/a>.<\/p>\n<p><strong>Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T., and Komagata, K.<\/strong> 1996. <em>Agromyces mediolanus<\/em> sp. nov., nom. rev., comb. nov., a species for &quot;<em>Corynebacterium mediolanum<\/em>&quot; Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. Int. J. Syst. Bacteriol. <strong>46:<\/strong> 88-93. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8573525?dopt=Abstract\">8573525<\/a>.<\/p>\n<p><strong>Cui, C.-B., Kakeya, H., Okada, G., Onose, R., and Osada, H.<\/strong> 1996. Novel mammalian cell cycle inhibitors, tryprostatins A, B and other diketopiperazines produced by <em>Aspergillus fumigatus<\/em>. I. Taxonomy, fermentation, isolation and biological properties. J. Antibiot. <strong>49:<\/strong> 527-533. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8698634?dopt=Abstract\">8698634<\/a>.<\/p>\n<p><strong>Ubukata, M., Morita, T., Kakeya, H., Kobinata, K., Kudo, T., and Osada, H.<\/strong> 1996. Sparoxomycins A1 and A2, new inducers of the flat reversion of NRK cells transformed by temperature sensitive Rous sarcoma virus. I. Taxonomy of the producing organism, fermentation and biological activity. J. Antibiot. <strong>49:<\/strong> 1096-1110. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8982337?dopt=Abstract\">8982337<\/a>.<\/p>\n<p><strong>Cui, C.-B., Ubukata, M., Kakeya, H., Onose, R., Okada, G., Takahashi, I., Isono, K., and Osada, H.<\/strong> 1996. Acetophthalidin, a novel inhibitor of mammalian cell cycle, produced by a fungus isolated from a sea sediment. J. Antibiotics <strong>49:<\/strong> 216-219. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8621365?dopt=Abstract\">8621365<\/a>.<\/p>\n<p><strong>Suh, S.-O., Takashima, M., and Nakase, T.<\/strong> 1996. Phylogenetic study of the basidiomycetous anamorphic yeasts <em>Rhodotorula lactosa<\/em> and <em>R. minuta<\/em>, and related taxa based on 18S rDNA sequence. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 1-6. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.1\">10.2323\/jgam.42.1<\/a>.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Hamamoto, M., Takashima, M., Hatano, T., and Fukui, S.<\/strong> 1996. A taxonomic study on cellulolytic yeasts and yeast-like microorganisms isolated in Japan. II. The genus <em>Cryptococcus<\/em>. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 7-15. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.7\">10.2323\/jgam.42.7<\/a>.<\/p>\n<p><strong>Takashima, M., Suh, S.-O., and Nakase, T.<\/strong> 1996. Group I introns found in nuclear small subunit ribosomal RNA genes of the ballistoconidiogenous anamorphic yeast <em>Bensingtonia ciliata<\/em> and <em>Bensingtonia yamatoana<\/em>. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 189-200. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.189\">10.2323\/jgam.42.189<\/a>.<\/p>\n<p><strong>Takashima, M. and Nakase, T.<\/strong> 1996. A phylogenetic study of the genus <em>Tilletiopsis<\/em>, <em>Tilletiaria anomala<\/em> and related taxa based on the small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 421-429. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.421\">10.2323\/jgam.42.421<\/a>.<\/p>\n<p><strong>Golubev, W., Ikeda, R., Shinoda, T., and Nakase, T.<\/strong> 1996. Mycocinogeny in the genus <em>Bullera<\/em>: anti-tremellaceous yeast activity of killer toxin produced by <em>Bullera hannae<\/em>. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 471-479. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.471\">10.2323\/jgam.42.471<\/a>.<\/p>\n<p><strong>Suh, S.-O., Takashima, M., Hamamoto, M., and Nakase, T.<\/strong> 1996. Molecular phylogeny of the ballistoconidium-forming anamorphic yeast genus <em>Bullera<\/em> and related taxa based on small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. <strong>42:<\/strong> 501-509. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.42.501\">10.2323\/jgam.42.501<\/a>.<\/p>\n<p><strong>Hashimoto, S., Igimi, H., Uchida, K., Satoh, T., Benno, Y., and Takeuchi, N.<\/strong> 1996. Effects of &#946;-lactam antibiotics on intestinal microflora and bile acid metabolism in rats. Lipids <strong>31:<\/strong> 601-609. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8784740?dopt=Abstract\">8784740<\/a>.<\/p>\n<p><strong>Tanaka, Y., Yazawa, K., Mikami, Y., Kudo, T., Suzuki, K., Komaki, H., Tojo, T., and Kadowaki, K.<\/strong> 1996. Changes in menaquinone composition associated with growth phase and medium composition in <em>Amycolatopsis<\/em> species. Microbiol. Cult. Collect. <strong>12:<\/strong> 11-16. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No12_1\/No12_1_11.pdf\">PDF<\/a>.<\/p>\n<p><strong>Okada, G.<\/strong> 1996. Conidiogenesis of a didymosporous synnematous hyphomycete, <em>Stachycoremium parvulum<\/em>. Microbiol. Cult. Collect. <strong>12:<\/strong> 17-24. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No12_1\/No12_1_17.pdf\">PDF<\/a>.<\/p>\n<p><strong>Suh, S.-O., Takematsu, A., Takashima, M., and Nakase, T.<\/strong> 1996. Molecular phylogenetic study on stalked conidium-forming yeasts and related basidiomycetous yeast taxa based on 18S rDNA sequences. Microbiol. Cult. Collect. <strong>12:<\/strong> 79-86. <a href=\"https:\/\/www.jsmrs.jp\/journal\/No12_2\/No12_2_79.pdf\">PDF<\/a>.<\/p>\n<p><strong>Hamana, K., Hamana, H., Niitsu, M., Samejima, K., and Itoh, T.<\/strong> 1996. Distribution of long linear and branched polyamines in thermophilic eubacteria and hyper thermophilic archaebacteria. Microbios <strong>85:<\/strong> 19-33.<\/p>\n<p><strong>Hamana, K., Hamana, H., Niitsu, M., Samejima, K., and Itoh, T.<\/strong> 1996. Polyamines of hyperthermophilic archaebacteria, <em>Archaeoglobus<\/em>, <em>Thermococcus<\/em>, <em>Pyrobaculum<\/em> and <em>Sulfolobus<\/em>. Microbios <strong>87:<\/strong> 69-76.<\/p>\n<p><strong>Benno, Y., He, F., Hosoda, M., Hashimoto, H., Kojima, T., Yamazaki, K., Uno, H., Mykkanen, H., and Salminen, S.<\/strong> 1996. Effects of <em>Lactobacillus<\/em> GG yogurt on human intestinal microecology in Japanese subjects. Nutr. Today <strong>31:<\/strong> 9S-11S.<\/p>\n<p><strong>Koseki, T., Ishikawa, I., Boutsi, E., He, T., and Benno, Y.<\/strong> 1996. Nutritional analysis and an enriched medium for fermentative treponemes isolated from subgingival plaque. Oral Microbiol. Immunol. <strong>11:<\/strong> 166-171. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8941771?dopt=Abstract\">8941771<\/a>.<\/p>\n<p><strong>Koseki, T., Benno, Y., Zhang-Koseki, Y. J., Umeda, M., and Ishikawa, I.<\/strong> 1996. Detection frequencies and the colony-forming unit recovery of oral treponemes by different cultivation methods. Oral Microbiol. Immunol. <strong>11:<\/strong> 203-208. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8941777?dopt=Abstract\">8941777<\/a>.<\/p>\n<p><strong>Ogata, K., Aminov, R. I., Nagamine, T., Benno, Y., Sekizaki, T., Mitsumori, M., Minato, H., and Itabashi, H.<\/strong> 1996. Structural organization of pRAM4, a cryptic plasmid from <em>Prevotella ruminicola<\/em>. Plasmid <strong>35:<\/strong> 91-97. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8700970?dopt=Abstract\">8700970<\/a>.<\/p>\n<p><strong>Prillinger, H., Messner, R., K&ouml;nig, H., Bauer, R., Lopandic, K., Molnar, O., Dangel, P., Weigang, F., Kirisits, T., Nakase, T., and Sigler, L.<\/strong> 1996. Yeasts associated with termites: a phenotypic and genotypic characterization and use of coevolution for dating evolutionary radiations in asco- and basidiomycetes. Syst. Appl. Microbiol. <strong>19:<\/strong> 265-283. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0723-2020(96)80053-1\">10.1016\/S0723-2020(96)80053-1<\/a>.<\/p>\n<p><strong>Benno, Y.<\/strong> 1996. A semi-automatic system for bacterial identification. RIKEN Rev. <strong>12:<\/strong> 57-58.<\/p>\n<p><strong>Benno, Y., Inoue, H., Tajima, K., Nagamine, T., Ogata, K., Sugiura, M., and Aminov, R. I.<\/strong> 1996. Isolation and identification of rumen anaerobic bacteria, <em>In:<\/em> The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings, vol. 2, pp. 654-655, Japanese Society of Zootechnical Science, Tokyo.<\/p>\n<p><strong>Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Sugiura, M., and Benno, Y.<\/strong> 1996. Genetic diversity of rumen bacteria based on direct retrieval and analysis of 16S rDNA sequences, <em>In:<\/em> The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings, vol. 2, pp. 656-657, Japanese Society of Zootechnical Science, Tokyo.<\/p>\n<p><strong>Nagamine, T., Takenaka, A., Aminov, R. I., Ogata, K., Sugiura, M., Tajima, K., Benno, Y., and Itabashi, H.<\/strong> 1996. Cloning, molecular analysis and expression of xylanase gene from <em>Ruminococcus albus<\/em> 7, <em>In:<\/em> The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings, vol. 2, pp. 660-661, Japanese Society of Zootechnical Science, Tokyo.<\/p>\n<p><strong>Ogata, K., Aminov, R. I., Nagamine, T., Sugiura, M., Tajima, K., Mitsumori, M., Sekizaki, T., Minato, H., and Benno, Y.<\/strong> 1996. Construction of <em>AscI<\/em> restriction map of <em>Fibrobacter succinogenes<\/em> S85 by pulse-field gel electrophoresis,<em> In:<\/em> The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings, vol. 2, pp. 664-665, Japanese Society of Zootechnical Science, Tokyo.<\/p>\n<p><strong>Cai, Y., Ogawa, M., Benno, Y., and Nakase, T.<\/strong> 1996. Effect of physical properties of yeasts on the aerobic deterioration in dairy farm silage, <em>In:<\/em> The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings, vol. 2, pp. 891-892, Japanese Society of Zootechnical Science, Tokyo.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1995\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1994\">1994<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1995<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Itoh, T., Kudo, T., Oyaizu, H., and Seino, A.<\/strong> 1995. Two new species in the genus <em>Actinomadura<\/em>; <em>A. glomerata<\/em> sp. nov., and <em>A. longicatena<\/em> sp. nov. Actinomycetologica <strong>9:<\/strong> 164-177. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.9_164\">10.3209\/saj.9_164<\/a>.<\/p>\n<p><strong>Hamamoto, M. and Nakase, T.<\/strong> 1995. Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. I. Six new species in the genus <em>Sporobolomyces<\/em>. Antonie van Leeuwenhoek <strong>67:<\/strong> 151-171. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7771763?dopt=Abstract\">7771763<\/a>.<\/p>\n<p><strong>Sakurai, I., Kosako, Y., Kawamura, Y., Ueki, T., Inoue, Y., and Nakase, T.<\/strong> 1995. Bacterially associated corrosion of aluminum surface in the air. Biotechnol. Lett. <strong>17:<\/strong> 1131-1132. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF00143116\">10.1007\/BF00143116<\/a>.<\/p>\n<p><strong>Hiraishi, A., Kishimoto, N., Kosako, Y., Wakao, N., and Tano, T.<\/strong> 1995. Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph <em>Acidobacterium capsulatum<\/em>. FEMS Microbiol. Lett. <strong>132:<\/strong> 91-94. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7590170?dopt=Abstract\">7590170<\/a>.<\/p>\n<p><strong>Urakami, T., Sasaki, J., Suzuki, K., and Komagata, K.<\/strong> 1995. Characterization and description of <em>Hyphomicrobium denitrificans<\/em> sp. nov. Int. J. Syst. Bacteriol. <strong>45:<\/strong> 528-532. DOI: <a href=\"https:\/\/doi.org\/10.1099\/00207713-45-3-528\">10.1099\/00207713-45-3-528<\/a>.<\/p>\n<p><strong>Kakeya, H., Takahashi, I., Okada, G., Isono, K., and Osada, H.<\/strong> 1995. Epolactaene, a novel neuritogenic compound in human neuroblastoma cells, produced by a marine fungus. J. Antibiotics <strong>48:<\/strong> 733-735. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7649877?dopt=Abstract\">7649877<\/a>.<\/p>\n<p><strong>Cui, C.-B., Kakeya, H., Okada, G., Onose, R., Ubukata, M., Takahashi, I., Isono, K., and Osada, H.<\/strong> 1995. Tryprostatins A and B, novel mammalian cell cycle inhibitors produced by <em>Aspergillus fumigatus<\/em>. J. Antibiotics <strong>48:<\/strong> 1382-1384. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8557590?dopt=Abstract\">8557590<\/a>.<\/p>\n<p><strong>Naito, S., Hayashidani, H., Kaneko, K., Ogawa, M., and Benno, Y.<\/strong> 1995. Development of intestinal lactobacilli in normal piglets. J. Appl. Bacteriol. <strong>79:<\/strong> 230-236. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7592119?dopt=Abstract\">7592119<\/a>.<\/p>\n<p><strong>Takashima, M., Suh, S.-O., and Nakase, T.<\/strong> 1995. Phylogenetic relationships among species of the genus <em>Bensingtonia<\/em> and related taxa based on the small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. <strong>41:<\/strong> 131-141. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.41.131\">10.2323\/jgam.41.131<\/a>.<\/p>\n<p><strong>Takashima, M., Suh, S.-O., and Nakase, T.<\/strong> 1995. <em>Bensingtonia musae<\/em> sp. nov. isolated from a dead leaf of <em>Musa paradisiaca<\/em> and its phylogenetic relationship among basidiomycetous yeasts. J. Gen. Appl. Microbiol. <strong>41:<\/strong> 143-151. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.41.143\">10.2323\/jgam.41.143<\/a>.<\/p>\n<p><strong>Hamana, K., Hamana, H., and Itoh, T.<\/strong> 1995. Ubiquitous occurrence of agmatine as the major polyamine within extremely halophilic archaebacteria. J. Gen. Appl. Microbiol. <strong>41:<\/strong> 153-158. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.41.153\">10.2323\/jgam.41.153<\/a>.<\/p>\n<p><strong>Suh, S.-O. and Nakase, T.<\/strong> 1995. Phylogenetic analysis of the ballistosporous anamorphic genera <em>Udeniomyces<\/em> and <em>Bullera<\/em>, and related basidiomycetous yeasts based on 18S rDNA sequences. Microbiology <strong>141:<\/strong> 901-906. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7773393?dopt=Abstract\">7773393<\/a>.<\/p>\n<p><strong>Hamana, K., Hamana, H., and Itoh, T.<\/strong> 1995. Polyamines in the hydrogen-oxidizing eubacteria, <em>Hydrogenobacter<\/em>, <em>Calderobacterium<\/em> and <em>Hydrogenovibrio<\/em> and the sulphur-reducing archaebacteria <em>Stygiolobus<\/em> and <em>Desulfurolobus<\/em>. Microbios <strong>81:<\/strong> 223-229.<\/p>\n<p><strong>Okada, G., Sakai, N., and Yamagishi, M.<\/strong> 1995. <em>Acremonium<\/em>-like submerged conidiation in <em>Paecilomyces nostocoides<\/em> and <em>P. lilacinus<\/em>. Mycoscience <strong>36:<\/strong> 345-351. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02268611\">10.1007\/BF02268611<\/a>.<\/p>\n<p><strong>Nagai, K., Sakai, T., Rantiatmodjo, R. M., Suzuki, K., Gams, W., and Okada, G.<\/strong> 1995. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi I. Mycoscience <strong>36:<\/strong> 247-256. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF02268598\">10.1007\/BF02268598<\/a>.<\/p>\n<p><strong>Koseki, T., Ishikawa, I., Umeda, M., and Benno, Y.<\/strong> 1995. Characterization of oral treponemes isolated from human periodontal pockets. Oral Microbiol. Immunol. <strong>10:<\/strong> 271-277. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8596668?dopt=Abstract\">8596668<\/a>.<\/p>\n<p><strong>Kishimoto, N., Kosako, Y., Wakao, N., Tano, T., and Hiraishi, A.<\/strong> 1995. Transfer of <em>Acidiphilium facilis<\/em> and <em>Acidiphilium aminolytica<\/em> to the genus <em>Acidocella<\/em> gen. nov., and emendation of the genus <em>Acidiphilium<\/em>. Syst. Appl. Microbiol. <strong>18:<\/strong> 85-91. DOI: <a href=\"https:\/\/doi.org\/10.1016\/S0723-2020(11)80453-4\">10.1016\/S0723-2020(11)80453-4<\/a>.<\/p>\n<p><strong>Kudo, T.<\/strong> 1995. Establishment of the genus <em>Herbidospora<\/em> and some new taxa of actinomycetes. Actinomycetologica <strong>9:<\/strong> 66-74. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.9_66\">10.3209\/saj.9_66<\/a>.<\/p>\n<p><strong>Nakase, T., Suh, S.-O., and Takashima, M.<\/strong> 1995. Significance of cellular xylose in the systematics of basidiomycetous yeasts. RIKEN Rev. <strong>8:<\/strong> 47-48.<\/p>\n<p><strong>Benno, Y.<\/strong> 1995. Oligosaccharides and human fecal bifidobacteria. RIKEN Rev. <strong>8:<\/strong> 57-58.<\/p>\n<p><strong>Nakase, T., Suh, S.-O., and Hamamoto, M.<\/strong> 1995. Molecular systematics of ballistoconidium-forming yeasts, <em>In:<\/em> Boekhout, T. and Samson, R. A. (eds.), Studies in Mycology No. 38, pp. 163-173, Centraalbureau voor Schimmelcultures, Baarn and Delft.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1994\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#1993\">1993<\/a><\/td>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1994<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Ochi, K., Inatsu, Y., Okamoto, S., Penyige, A., Kudo, T., and Hotta, K.<\/strong> 1994. Characterization of various <em>Streptomyces griseus<\/em> strains as to aerial mycelium- and submerged spore-formation. Actinomycetologica <strong>8:<\/strong> 79-84. DOI: <a href=\"https:\/\/doi.org\/10.3209\/saj.8_79\">10.3209\/saj.8_79<\/a>.<\/p>\n<p><strong>Hara-Kudo, Y., Benno, Y., Hayashidani, H., Kaneko, K. I., and Ogawa, M.<\/strong> 1994. Improved media for isolation of fecal bacteria in koalas. Bifidobacteria Microflora <strong>13:<\/strong> 9-16. DOI: <a href=\"https:\/\/doi.org\/10.12938\/bifidus1982.13.1_9\">10.12938\/bifidus1982.13.1_9<\/a>.<\/p>\n<p><strong>Ishii, M., Ono, T., Suzuki, K., Igarashi, Y., and Kodama, T.<\/strong> 1994. Electron transport system in <em>Pseudomonas hydrogenothermophila<\/em> strain TH-1, a thermophilic hydrogen-oxidizing bacterium. Biosci. Biotechnol. Biochem. <strong>58:<\/strong> 1-4. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27315696?dopt=Abstract\">27315696<\/a>.<\/p>\n<p><strong>Shimada, T., Arakawa, E., Itoh, K., Kosako, Y., Inoue, K., Zhengshi, Y., and Aldova, E.<\/strong> 1994. New O and H antigens of <em>Plesiomonas shigelloides<\/em> and their O antigenic relationships to <em>Shigella boydii<\/em>. Curr. Microbiol. <strong>28:<\/strong> 351-354. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF01570200\">10.1007\/BF01570200<\/a>.<\/p>\n<p><strong>Urakami, T., Ito-Yoshida, C., Araki, H., Kojima, T., Suzuki, K., and Komagata, K.<\/strong> 1994. Transfer of <em>Pseudomonas plantarii<\/em> and <em>Pseudomonas glumae<\/em> to <em>Burkholderia<\/em> as <em>Burkholderia<\/em> spp. and description of <em>Burkholderia vandii<\/em> sp. nov. Int. J. Syst. Bacteriol. <strong>44:<\/strong> 235-245. DOI: <a href=\"https:\/\/doi.org\/10.1099\/00207713-44-2-235\">10.1099\/00207713-44-2-235<\/a>.<\/p>\n<p><strong>Takizawa, S., Kojima, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T.<\/strong> 1994. <em>Lactobacillus kefirgranum<\/em> sp. nov. and <em>Lactobacillus parakefir<\/em> sp. nov., two new species from kefir grains. Int. J. Syst. Bacteriol. <strong>44:<\/strong> 435-439. DOI: <a href=\"https:\/\/doi.org\/10.1099\/00207713-44-3-435\">10.1099\/00207713-44-3-435<\/a>.<\/p>\n<p><strong>Nakase, T., Takashima, M., and Hamamoto, M.<\/strong> 1994. <em>Sporobolomyces linderae<\/em>, a new ballistosporous anamorphic yeast found on a dead leaf of <em>Lindera obtusiloba<\/em> collected at Mt. Fuji. J. Gen. Appl. Microbiol. <strong>40:<\/strong> 95-101. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.40.95\">10.2323\/jgam.40.95<\/a>.<\/p>\n<p><strong>Suzuki, M., Nakase, T., and Komagata, K.<\/strong> 1994. <em>Candida stellimalicola<\/em>, a new species of anamorphic yeast isolated from star apple in Thailand. J. Gen. Appl. Microbiol. <strong>40:<\/strong> 115-121. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.40.115\">10.2323\/jgam.40.115<\/a>.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Takashima, M., Miyakawa, Y., Kagaya, K., Fukazawa, Y., and Komagata, K.<\/strong> 1994. <em>Candida sojae<\/em>, a new species of yeast isolated from an extraction process of water-soluble substances of defatted soybean flakes. J. Gen. Appl. Microbiol. <strong>40:<\/strong> 161-169. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.40.161\">10.2323\/jgam.40.161<\/a>.<\/p>\n<p><strong>van der Walt, J. P., Nakase, T., Suzuki, M., Takashima, M., and Yamada, Y.<\/strong> 1994. <em>Debaryomyces polymorphus<\/em> var. <em>africanus<\/em>, a new variety of ascosporogenous yeast found in South Africa. J. Gen. Appl. Microbiol. <strong>40:<\/strong> 331-337. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.40.331\">10.2323\/jgam.40.331<\/a>.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Takashima, M., Hamamoto, M., Hatano, T., and Fukui, S.<\/strong> 1994. A taxonomic study on cellulolytic yeasts and yeast-like microorganisms isolated in Japan. I. Ascomycetous yeast genera <em>Candida<\/em> and <em>Williopsis<\/em>, and a yeast-like genus <em>Prototheca<\/em>. J. Gen. Appl. Microbiol. <strong>40:<\/strong> 519-531. DOI: <a href=\"https:\/\/doi.org\/10.2323\/jgam.40.519\">10.2323\/jgam.40.519<\/a>.<\/p>\n<p><strong>Nakase, T., Suzuki, M., Takashima, M., Rosadi, D., Hermosillo, A. M., and Komagata, K.<\/strong> 1994. <em>Candida akabanensis<\/em>, a new species of yeast isolated from insect frass in bark of a grape-vine. Microbiol. Cult. Collect. <strong>10:<\/strong> 35-43.<\/p>\n<p><strong>Lee, W.-K., Benno, Y., Fujisawa, T., Itoh, K., and Mitsuoka, T.<\/strong> 1994. Isolation and characterization of fecal clostridia from humans and animals. Microbiol. Cult. Collect. <strong>10:<\/strong> 89-96.<\/p>\n<p><strong>Takashima, M., Suzuki, M., and Nakase, T<\/strong>. 1994. Isolation of pyridoxine-requiring strains of <em>Candida intermedia<\/em> from insect frass of a fig-tree. Microbiol. Cult. Collect. <strong>10:<\/strong> 97-101.<\/p>\n<p>&nbsp;<br \/>\n<a name=\"1993\" class=\"l-name\"><\/a><\/p>\n<div style=\"float:right;\">\n<table summary=\"jump to the year\" border=\"0\" cellspacing=\"1\" cellpadding=\"2\" align=\"right\">\n<tr>\n<td style=\"text-align: center\" bgcolor=\"#ffffff\"><a href=\"#TOP\">Top of the page<\/a><\/td>\n<\/tr>\n<\/table>\n<\/div>\n<p>&nbsp;<\/p>\n<table style=\"text-align: center\" width=\"100%\" bgcolor=\"#3CB371\">\n<tr>\n<td style=\"text-align: center\"><strong>1993<\/strong><\/td>\n<\/tr>\n<\/table>\n<p><strong>Nakase, T., Takematsu, A., Hamamoto, M., and Takashima, M.<\/strong> 1993. The expanding realm of ballistosporous yeasts. Antonie van Leeuwenhoek <strong>63:<\/strong> 191-200. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8259835?dopt=Abstract\">8259835<\/a>.<\/p>\n<p><strong>Park, Y.-H., Suzuki, K., Yim, D.-G., Lee, K.-C., Kim, E., Yoon, J., Kim, S., Kho, Y. H., Goodfellow, M., and Komagata, K.<\/strong> 1993. Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwenhoek <strong>64:<\/strong> 307-313. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8085792?dopt=Abstract\">8085792<\/a>.<\/p>\n<p><strong>Taguchi, S., Kikuchi, H., Kojima, S., Kumagai, I., Nakase, T., Miura, K., and Momose, H.<\/strong> 1993. High frequency of SSI-like protease inhibitors among <em>Streptomyces<\/em>. Biosci. Biotechnol. Biochem. 57: 522-524. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7763545?dopt=Abstract\">7763545<\/a>.<\/p>\n<p><strong>Kojima, S., Takizawa, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T.<\/strong> 1993. An improved medium for the isolation of lactobacilli from kefir grains. Biosci. Biotechnol. Biochem. <strong>57:<\/strong> 119-120. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27316884?dopt=Abstract\">27316884<\/a>.<\/p>\n<p><strong>Suzuki, M. and Nakase, T.<\/strong> 1993. A taxonomic study on <em>Candida glaebosa<\/em> and phenotypically related species <em>Candida saitoana<\/em>, with a description of a new species <em>Candida pseudoglaebosa<\/em>. Bull. JFCC <strong>9:<\/strong> 120-134.<\/p>\n<p><strong>Kishimoto, N., Kosako, Y., and Tano, T.<\/strong> 1993. <em>Acidiphilium aminolytica<\/em> sp. nov.: an acidophilic chemoorganotrophic bacterium isolated from acidic mineral environment. Curr. Microbiol. <strong>27:<\/strong> 131-136. DOI: <a href=\"https:\/\/doi.org\/10.1007\/BF01576009\">10.1007\/BF01576009<\/a>.<\/p>\n<p><strong>Kudo, T., Itoh, T., Miyadoh, S., Shomura, T., and Seino, A.<\/strong> 1993. <em>Herbidospora<\/em> gen. nov., a new genus of the family <em>Streptosporangiaceae<\/em> Goodfellow et al. 1990. Int. J. Syst. Bacteriol. <strong>43:<\/strong> 319-328. PMID: <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/7684242?dopt=Abstract\">7684242<\/a>.<\/p>\n<p><strong>Urakami, T., Araki, H., Suzuki, K., and Komagata, K.<\/strong> 1993. 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J., Seifert, K. A., and Webber, J. F. (eds.), <em>Ceratocystis<\/em> and <em>Ophiostoma<\/em>: Taxonomy, ecology and pathogenicity, pp. 27-41, APS Press, St. Paul.<\/p>\n<p><strong>Suzuki, K., Goodfellow, M., and O&#8217;Donnell, A. G.<\/strong> 1993. Cell envelopes and classification, <em>In:<\/em> Goodfellow, M. and O&#8217;Donnell, A. G. (eds.), Handbook of new bacterial systematics, pp. 195-250, Academic Press, London.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Last update: May 28, 2026 2025 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 Return to the JCM Top Page &nbsp; &nbsp; 2026 Kanno, N., Ohtani, T., Oda, N., Kato, S., Ohkuma, M., and Shigeto, S. 2026. Domain-level classification of archaea and bacteria using AI-assisted single-cell raman spectroscopy. ACS. Omega. 11: 16913-16921. PMID: 41867523. Moriyama, T., Endo, C., Isagi, Y., Tanaka, C., Ohkuma, M., and Hashimoto, A. 2026. Rediscovery of &#8220;Gloeocystis-Halbflechte&#8221; after 84 years revealed an independent lineage of ascomycetes harboured in gelatinous algal biofilms. Fungal Biology. 130: 101757. DOI: 10.1016\/j.funbio.2026.101757. Kato, S., Masuda, S., Shibata, A., Itoh, T., Sakamoto, M., Shirasu, K. and Ohkuma, M. 2026. Whole-genome sequencing of diverse 351 cultured prokaryotes including as-yet-unsequenced type strains. Genome Res. 36: 875-884. PMID:41946568. Yamamoto, E., Hisatomi, A., Miwa, K., Sakurai, N., Koizumi, A., Ohkuma, M., Tsuchihashi, H., and Sakamoto, M. 2026. Proposal of two novel species, Allocoprococcus similis gen. nov., sp. nov. and Faecalimonas hominis sp. nov., isolated from human faeces and genome-based reorganization of the genus Coprococcus. Int. J. Syst. Evol. Microbiol. 76: 007011. 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