JCM On-line Catalogue of Strains

 Scientific name 1
 Genus:
 Species:
    Example 1: Genus = Micromonospora
Example 2: Species = aurantiaca
Example 3: Genus = %monospo, Species = %ensis
(Prefix match search at each box. Inside match or suffix match search can be performed by using "%" as a wild-card character like Example 3. Case-insensitive)

 Scientific name 2
 Scientific name:
    Example 1: Scientific name = Micromonospora chalcea
Example 2: Scientific name = Lactobacillus paracasei subsp. paracasei
(Prefix match search. Inside match or suffix match search can be performed by using "%" as a wild-card character. Case-insensitive)

 JCM accession number
   JCM:
    Example: JCM = 12345 (Exact match search)

 Accession number of other culture collection
 Acronym:
 Number:
    Example 1: Acronym = DSM, Number = 43067
Example 2: Acronym = VKM, Number = Ac-636
(Exact match search at both boxes. Case-sensitive)

 Keyword
   Keyword:
    Example: Keyword = genome sequence
(Inside match search. Case-insensitive)

 Culture medium
 JCM Medium No.:
 Name of Medium:
    Example 1: JCM Medium No. = 58
Example 2: Name of Medium = malt extract
(Exact match search for "JCM Medium No." and inside match search for "Name of Medium". Case-insensitive)

Microbial Genome Sequences and the Corresponding JCM Strains

Last update: Sept. 16, 2014
The number of publication of microbial genome sequences is rapidly increasing. The strains corresponding to those whose genome sequences appear in the databases are available from JCM upon request as listed below (see http://jcm.brc.riken.jp/en/ordering_e). The organisms in the lists are alphabetically arranged by phylum, genus and species names, in this order.
Domain Archaea
Phylum Crenarchaeota
Phylum Euryarchaeota
Domain Bacteria
Phylum Acidobacteria
Phylum Actinobacteria
Phylum Aquificae
Phylum Bacteroidetes
Phylum Chlorobi
Phylum Deinococcus-Thermus
Phylum Elusimicrobia
Phylum Firmicutes
Phylum Fusobacteria
Phylum Gemmatimonadetes
Phylum Proteobacteria (alpha)
Phylum Proteobacteria (beta)
Phylum Proteobacteria (delta)
Phylum Proteobacteria (epsilon)
Phylum Proteobacteria (gamma)
Phylum Spirochaetes
Phylum Synergistetes
Phylum Thermodesulfobacteria
Phylum Thermotogae
Phylum Verrucomicrobia
Unclassified phylum
Domain Eukaryota
Phylum Ascomycota
Phylum Basidiomycota

 

Domain Archaea

Scientific name Sequenced strain JCM accession no. Database accession no.
Phylum Crenarchaeota
Acidilobus saccharovorans 345-15 JCM 18335T CP001742
Aeropyrum camini SY1 JCM 12091T AP012489
Aeropyrum pernix K1 JCM 9820T BA000002
Desulfurococcus fermentans DSM 16532 JCM 13383T CP003321
Desulfurococcus kamchatkensis 1221n JCM 16383T CP001140
Desulfurococcus mucosus DSM 2162 JCM 9187T CP002363
Hyperthermus butylicus DSM 5456 JCM 9403T CP000493
Ignicoccus hospitalis KIN4/I JCM 14125T CP000816
Ignisphaera aggregans DSM 17230 JCM 13409T CP002098
Metallosphaera cuprina Ar-4 JCM 15769T CP002656
Metallosphaera sedula DSM 5348 JCM 9185T CP000682
Pyrobaculum aerophilum str. IM2 JCM 9630T AE009441
Pyrobaculum neutrophilum V24Sta JCM 9278T CP001014
Pyrobaculum oguniense TE7 JCM 10595T CP003316
Pyrolobus fumarii 1A JCM 17356T CP002838
Staphylothermus hellenicus DSM 12710 JCM 10830T CP002051
Staphylothermus marinus F1 JCM 9404T CP000575
Sulfolobus acidocaldarius DSM 639 JCM 8929T CP000077
Sulfolobus acidocaldarius N8 JCM 9063 CP002817
Sulfolobus solfataricus P2 JCM 11322 AE006641
Sulfolobus tokodaii str. 7 JCM 10545T BA000023
“Thermofilum adornatus” 1910b JCM 19809 CP006646
Thermoproteus tenax Kra 1 JCM 9277T FN869859
Vulcanisaeta distributa DSM 14429 JCM 11212T CP002100
Phylum Euryarchaeota
Archaeoglobus fulgidus DSM 4304 JCM 9628T AE000782
Archaeoglobus profundus DSM 5631 JCM 9629T CP001857
Halalkalicoccus jeotgali B3 JCM 14584T CP002062
Haloarcula hispanica ATCC 33960 JCM 8911T CP002921
CP002922
Haloarcula marismortui ATCC 43049 JCM 8966T AY596297
AY596298
Halobacterium salinarum R1 JCM 9409 AM774415
Halobacterium sp. NRC-1 JCM 11081 AE004437
Halobiforma lacisalsi AJ5 JCM 12983T AGFZ00000000
Halococcus hamelinensis 100A6 JCM 12892T AJRK00000000
Haloferax mediterranei ATCC 33500 JCM 8866T CP001868
Haloferax volcanii DS2 JCM 8879T CP001956
Halogeometricum borinquense DSM 11551 JCM 10706T CP001690
Halomicrobium mukohataei DSM 12286 JCM 9738T CP001688
Halopiger xanaduensis SH-6 JCM 14033T CP002839
Haloquadratum walsbyi C23 JCM 12705T FR746099
Haloquadratum walsbyi DSM 16790 JCM 12895 AM180088
Halorhabdus tiamatea SARL4B JCM 14471T AFNT00000000
Halorhabdus utahensis DSM 12940 JCM 11049T CP001687
Halorubrum lacusprofundi ATCC 49239 JCM 8891T CP001365
Halosarcina pallida JCM 14848 JCM 14848T AOIV00000000
Haloterrigena turkmenica DSM 5511 JCM 9101T CP001860
Methanobacterium paludis SWAN1 JCM 18151T CP002772
Methanobrevibacter ruminantium M1 JCM 13430T CP001719
Methanocaldococcus jannaschii DSM 2661 JCM 10045T L77117
Methanocella conradii HZ254 JCM 17849T CP003243
Methanococcus maripaludis S2 JCM 13030 BX950229
Methanopyrus kandleri AV19 JCM 9639T AE009439
Methanosaeta concilii GP-6 JCM 10134T CP002565
Methanosarcina acetivorans str. C2A JCM 12185T AE010299
Methanosarcina mazei Gö1 JCM 11833 AE008384
Methanosphaera stadtmanae DSM 3091 JCM 11832T CP000102
Methanothermobacter marburgensis str. Marburg JCM 14651T CP001710
Methanothermobacter thermautotrophicus str. Delta H JCM 10044T AE000666
Methanothermus fervidus DSM 2088 JCM 10308T CP002278
Natrialba magadii ATCC 43099 JCM 8861T CP001932
Natronomonas moolapensis 8.8.11 JCM 14361T HF582854
Natronomonas pharaonis DSM 2160 JCM 8858T CR936257
Picrophilus torridus DSM 9790 JCM 10055T AE017261
“Pyrococcus abyssi” GE5 JCM 18155T AL096836
Pyrococcus furiosus DSM 3638 JCM 8422T AE009950
Pyrococcus horikoshii OT3 JCM 9974T BA000001
Pyrococcus yayanosii CH1 JCM 16557T CP002779
Thermococcus gammatolerans EJ3 JCM 11827T CP001398
Thermococcus kodakarensis KOD1 JCM 12380T AP006878
Thermococcus nautili 30-1 JCM 19601T CP007264
Thermococcus zilligii AN1 JCM 10554T AJLF00000000
Thermococcus litoralis DSM 5473 JCM 8560T AHVB00000000
Thermoplasma acidophilum DSM 1728 JCM 9062T AL139299
Thermoplasma volcanium GSS1 JCM 9571T BA000011
“Thermococcus onnurineus” NA1 JCM 13517T CP000855

 

Domain Bacteria

Scientific name Sequenced strain JCM accession no. Database accession no.
Phylum Acidobacteria
Acidobacterium capsulatum ATCC 51196 JCM 7670T CP001472
Phylum Actinobacteria
Acidimicrobium ferrooxidans DSM 10331 JCM 15462T CP001631
Actinoalloteichus spitiensis RMV-1378 JCM 12472T AGVX00000000
Actinoplanes missouriensis 431 JCM 3121T AP012319
Actinosynnema mirum DSM 43827 JCM 3225T CP001630
Adlercreutzia equolifaciens DSM 19450 JCM 14793T AP013105
Aeromicrobium marinum DSM 15272 JCM 13314T ACLF00000000
Amycolatopsis mediterranei S699 JCM 4789T CP002896
Amycolatopsis orientalis KCTC 9412 JCM 4235T
JCM 4600T
ASJB00000000
Amycolicicoccus subflavus DQS3-9A1 JCM 17490T CP002786
Arthrobacter arilaitensis Re117 JCM 13566T FQ311875
Arthrobacter chlorophenolicus A6 JCM 12360T CP001341
Arthrobacter phenanthrenivorans Sphe3 JCM 16027T CP002379
Arthrobacter sp. SJCon JCM 16850 AOFD00000000
Atopobium parvulum DSM 20469 JCM 10300T CP001721
Atopobium rimae ATCC 49626 JCM 10299T ACFE00000000
Beutenbergia cavernae DSM 12333 JCM 11478T CP001618
Bifidobacterium adolescentis ATCC 15703 JCM 1275T AP009256
Bifidobacterium angulatum DSM 20098 JCM 7096T ABYS00000000
Bifidobacterium animalis subsp. lactis DSM 10140 JCM 10602T CP001606
Bifidobacterium breve DSM 20213 JCM 1192T ACCG00000000
Bifidobacterium gallicum DSM 20093 JCM 8224T ABXB00000000
Bifidobacterium moukalabense DSM 27321 JCM 18751T ABXB00000000
Bifidobacterium pseudocatenulatum DSM 20438 JCM 1200T ABXX00000000
Brachybacterium faecium DSM 4810
strain 6-10
JCM 11609T CP001643
Brevibacterium mcbrellneri ATCC 49030 JCM 11682T ADNU00000000
Catenulispora acidiphila DSM 44928 JCM 14897T CP001700
Cellulomonas fimi ATCC 484 JCM 1341T CP002666
Cellulomonas flavigena DSM 20109 JCM 18109T CP001964
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 JCM 9667T AM849034
Collinsella aerofaciens ATCC 25986 JCM 10188T AAVN00000000
Collinsella intestinalis DSM 13280 JCM 10643T ABXH00000000
Collinsella stercoris DSM 13279 JCM 10641T ABXJ00000000
Conexibacter woeseii DSM 14684 JCM 11494T CP001854
Coriobacterium glomerans PW2 JCM 10262T CP002628
Corynebacterium accolens ATCC 49725 JCM 8331T ACGD00000000
Corynebacterium ammoniagenes DSM 20306 JCM 1305T ADNS00000000
Corynebacterium argentoratense DSM 44202 JCM 10392T CP006365
Corynebacterium aurimucosum ATCC 700975 JCM 12684 ACLH00000000
CP001601
Corynebacterium efficiens YS-314 JCM 11189T ACLI00000000
BA000035
Corynebacterium glucuronolyticum ATCC 51866 JCM 10394 ACHF00000000
Corynebacterium glutamicum ATCC 13032 JCM 1318T BA000036
Corynebacterium glutamicum ATCC 14067 JCM 1308 AGQQ00000000
Corynebacterium glutamicum R JCM 18229 AP009044
NC_009342
Corynebacterium halotolerans YIM 70093 JCM 12676T CP003697
Corynebacterium jeikeium ATCC 43734 JCM 9384T ACYW00000000
Corynebacterium kroppenstedtii DSM 44385 JCM 11950T CP001620
Corynebacterium lipophiloflavum DSM 44291 JCM 10383T ACHJ00000000
Corynebacterium maris DSM 45190 JCM 17018T CP003924
Corynebacterium matruchotii ATCC 14266 JCM 9386T ACSH00000000
Corynebacterium resistens DSM 45100 JCM 12819T CP002857
Corynebacterium striatum ATCC 6940 JCM 9390T ACGE00000000
Corynebacterium terpenotabidum Y-11 JCM 10555T CP003696
Corynebacterium urealyticum DSM 7109 JCM 10395T AM942444
Corynebacterium variabile DSM 44702 JCM 12073 CP002917
Dietzia alimentaria 72 JCM 16360T AGFF00000000
Eggerthella lenta DSM 2243 JCM 9979T CP001726
Geodermatophilus obscurus DSM 43160 JCM 3152T CP001867
Gordonia amarae NBRC 15530 JCM 3171T BAED00000000
Gordonia bronchialis DSM 43247 JCM 3198T
JCM 3231T
CP001802
Gordonibacter pamelaeae 7-10-1-b JCM 16334T FP929047
Intrasporangium calvum DSM 43043 JCM 3097T CP002343
Jiangella gansuensis DSM 44835 JCM 13367T AZXT00000000
Jonesia denitrificans DSM 20603 JCM 11481T CP001706
Kineococcus radiotolerans SRS30216 JCM 12686T CP000750
Kitasatospora setae KM-6054 JCM 3304T AP010968
Kocuria rhizophila DC2201
NBRC 103217
JCM 20050 AP009152
Kribbella flavida DSM 17836 JCM 10339T CP001736
Kytococcus sedentarius DSM 20547 JCM 11482T CP001686
Leifsonia rubra CMS 76R JCM 15064T ATIA00000000
Leucobacter chromiiresistens JG 31 JCM 17813T AGCW00000000
Micrococcus luteus NCTC 2665 JCM 1464T CP001628
Microlunatus phosphovorus NM-1 JCM 9379T AP012204
Micromonospora aurantiaca ATCC 27029 JCM 10878T CP002162
Mycobacterium abscessus subsp. abscessus ATCC 19977 JCM 13569T CU458896
Mycobacterium abscessus subsp. bolletii BD JCM 15297T AHAS00000000
Mycobacterium colombiense CECT 3035 JCM 16228T AFVW00000000
Mycobacterium intracellulare ATCC 13950 JCM 6384T ABIN00000000
CP003322
Mycobacterium kansasii ATCC 12478 JCM 6379T CM000636
Mycobacterium parascrofulaceum ATCC BAA-614 JCM 13015T ADNV00000000
Mycobacterium simiae ATCC 25275
DSM 44165
JCM 12377T CBMJ000000000
Mycobacterium vanbaalenii PYR-1 JCM 13017T CP000511
Nakamurella multipartita DSM 44233 JCM 9543T CP001737
Nocardia abscessus NBRC 100374 JCM 10984T BAFP00000000
Nocardia aobensis NBRC 100429 JCM 12352T BAFQ00000000
Nocardia araoensis NBRC 100135 JCM 12118T BAFR00000000
Nocardia asiatica NBRC 100129 JCM 11892T BAFS00000000
Nocardia asteroides NBRC 15531 JCM 3384T BAFO00000000
Nocardia brasiliensis NBRC 14402 JCM 3374T BAFT00000000
Nocardia brevicatena NBRC 12119 JCM 3029T BAFU00000000
Nocardia cerradoensis NBRC 101014 JCM 12209T BAFW00000000
Nocardia concava NBRC 100430 JCM 12351T BAFX00000000
Nocardia cyriacigeorgica NBRC 100375 JCM 11763T BAFY00000000
Nocardia exalbida NBRC 100660 JCM 12667T BAFZ00000000
Nocardia higoensis NBRC 100133 JCM 12121T BAGA00000000
Nocardia jiangxiensis NBRC 101359 JCM 12861T BAGB00000000
Nocardia niigatensis NBRC 100131 JCM 11894T BAGC00000000
Nocardia otitidiscaviarum NBRC 14405 JCM 3377T
JCM 3393T
BAGD00000000
Nocardia paucivorans NBRC 100373 JCM 10919T BAGE00000000
Nocardia pneumoniae NBRC 100136 JCM 12119T BAGF00000000
Nocardia takedensis NBRC 100417 JCM 13313T BAGG00000000
Nocardia tenerifensis NBRC 101015 JCM 12693T BAGH00000000
Nocardia terpenica NBRC 100888 JCM 13033T BAGI00000000
Nocardia testacea NBRC 100365 JCM 12235T BAGJ00000000
Nocardia thailandica NBRC 100428 JCM 12356T BAGK00000000
Nocardia transvalensis NBRC 15921 JCM 9099T BAGL00000000
Nocardia veterana NBRC 100344 JCM 11307T BAGM00000000
Nocardia vinacea NBRC 16497 JCM 10988T BAGN00000000
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 JCM 7437T CP002040
CP002041
Olsenella uli DSM 7084 JCM 12494T CP002106
Parascardovia denticolens F0305
DSM 10105
JCM 12538T ADEB00000000
AEON00000000
Propionibacterium acnes ATCC 11828 JCM 6473 CP003084
Pseudonocardia dioxanivorans CB1190 JCM 13855 CP002593
Renibacterium salmoninarum ATCC 33209 JCM 11484T CP000910
Rhodococcus imtechensis RKJ300 JCM 13270T AJJH00000000
Rothia dentocariosa ATCC 17931 JCM 3067T CP002280
Rothia mucilaginosa ATCC 25296 JCM 10910T ACVO00000000
Rubrobacter xylanophilus DSM 9941 JCM 11954T CP000386
Saccharomonospora azurea NA-128 JCM 7551T CM001466
Saccharomonospora cyanea NA-134 JCM 7552T CM001440
Saccharomonospora viridis DSM 43017 JCM 3036T CP001683
Saccharopolyspora erythraea NRRL 2338 JCM 4748T AM420293
Saccharopolyspora spinosa NRRL 18395 JCM 9375T AEYC00000000
Salinispora tropica CNB-440 JCM 13857T CP000667
Sanguibacter keddieii DSM 10542 JCM 11429T CP001819
Scardovia inopinata F0304 JCM 12537T ADCX00000000
Segniliparus rotundus DSM 44985 JCM 13578T CP001958
Segniliparus rugosus ATCC BAA-974 JCM 13579T ACZI00000000
Serinicoccus profundi MCCC 1A05965 JCM 17740T AFYF00000000
Slackia exigua ATCC 700122 JCM 11022T ACUX00000000
Slackia heliotrinireducens DSM 20476 JCM 14554T CP001684
Slackia piriformis YIT 12062 JCM 16070T ADMD00000000
Stackebrandtia nassauensis DSM 44728 JCM 14905T CP001778
Streptomyces albulus CCRC 11814 JCM 5054 AROY00000000
Streptomyces avermitilis MA-4680 JCM 5070T BA000030
“Streptomyces cattleya” DSM 46488
NRRL 8057
JCM 4925T CP003219
FQ859185
Streptomyces clavuligerus ATCC 27064 JCM 4710T ABJH00000000
CM000913
CM001015
“Streptomyces davawensis” JCM 4913 JCM 4913T HE971709
Streptomyces exfoliatus NRRL B-2924 JCM 4366T JOFB00000000
“Streptomyces fulvoviolaceus” NRRL B-2870 JCM 4676T JOEY00000000
Streptomyces ghanaensis ATCC 14672 JCM 4963T ABYA00000000
Streptomyces griseus NBRC 13350 JCM 4626 AP009493
“Streptomyces pristinaespiralis” ATCC 25486 JCM 4507T CM000950
“Streptomyces sviceus” ATCC 29083 JCM 4929T CM000951
Streptomyces viridochromogenes DSM 40736 JCM 4977 GG657757
Streptomyces zinciresistens K42 JCM 18080T AGBF00000000
Streptosporangium roseum DSM 43021 JCM 3005T CP001814
Thermobispora bispora DSM 43833 JCM 10125T CP001874
Thermomonospora curvata DSM 43183 JCM 3096T CP001738
Tsukamurella paurometabola DSM 20162 JCM 10117T CP001966
Turicella otitidis ATCC 51513 JCM 12146T AHAE00000000
Xylanimonas cellulosilytica DSM 15894 JCM 12276T CP001821
Phylum Aquificae
Sulfurihydrogenibium yellowstonense SS-5 JCM 12773T ABZS00000000
Thermocrinis albus DSM 14484 JCM 11386T CP001931
Thermovibrio ammonificans HB-1 JCM 12110T CP002444
NC_014926
Phylum Bacteroidetes
Alistipes finegoldii DSM 17242 JCM 16770T CP003274
Alistipes putredinis DSM 17216 JCM 16772T ABFK00000000
Alloprevotella tannerae ATCC 51259 JCM 16135T ACIJ00000000
Bacteroides caccae ATCC 43185 JCM 9498T AAVM00000000
Bacteroides cellulosilyticus DSM 14838 JCM 15632T ACCH00000000
Bacteroides clarus YIT 12056 JCM 16067T AFBM00000000
Bacteroides coprocola DSM 17136 JCM 12979T ABIY00000000
Bacteroides coprophilus DSM 18228 JCM 13818T ACBW00000000
Bacteroides coprosuis DSM 18011 JCM 13475T AFFW00000000
Bacteroides dorei DSM 17855 JCM 13471T ABWZ00000000
Bacteroides eggerthii DSM 20697 JCM 12986T ABVO00000000
Bacteroides faecis MAJ27 JCM 16478T AGDG00000000
Bacteroides finegoldii DSM 17565 JCM 13345T ABXI00000000
Bacteroides fluxus YIT 12057 JCM 16101T AFBN00000000
Bacteroides fragilis NTCT 9343 JCM 11019T CR626927
Bacteroides helcogenes P36-108 JCM 6297T CP002352
Bacteroides intestinalis DSM 17393 JCM 13265T ABJL00000000
Bacteroides ovatus ATCC 8483 JCM 5824T AAXF00000000
Bacteroides plebeius DSM 17135 JCM 12973T ABQC00000000
Bacteroides pyogenes JCM 6292 JCM 6292 BAIQ00000000
Bacteroides pyogenes JCM 6294 JCM 6294T BAIR00000000
Bacteroides pyogenes JCM 10003 JCM 10003 BAIU00000000
Bacteroides reticulotermitis JCM 10512 JCM 10512T BAIV00000000
Bacteroides salanitronis DSM 18170 JCM 13657T CP002530
Bacteroides stercoris ATCC 43183 JCM 9496T ABFZ00000000
Bacteroides thetaiotaomicron VPI-5482 JCM 5827T AE015928
Bacteroides uniformis ATCC 8492 JCM 5828T AAYH00000000
Bacteroides vulgatus ATCC 8482 JCM 5826T CP000139
Capnocytophaga gingivalis ATCC 33624 JCM 12953T ACLQ00000000
Capnocytophaga ochracea DSM 7271 JCM 12966T CP001632
Capnocytophaga sputigena ATCC 33612 JCM 12967T ABZV00000000
Chryseobacterium gleum ATCC 35910 JCM 2410T ACKQ00000000
Cytophaga hutchinsonii ATCC 33406 JCM 20678T CP000383
Dysgonomonas gadei ATCC BAA-286 JCM 16698T ADLV00000000
Dysgonomonas mossii DSM 22836 JCM 16699T ADLW00000000
Marinilabilia salmonicolor JCM 21150 JCM 21150T AJKI00000000
Odoribacter splanchnicus DSM 20712 JCM 15291T CP002544
Paludibacter propionicigenes WB4 JCM 13257T CP002345
Parabacteroides distasonis ATCC 8503 JCM 5825T CP000140
Parabacteroides johnsonii DSM 18315 JCM 13406T ABYH00000000
Parabacteroides merdae ATCC 43184 JCM 9497T AAXE00000000
Paraprevotella xylaniphila YIT 11841 JCM 14860T AFBR00000000
Pedobacter heparinus DSM 2366 JCM 7457T CP001681
Pedobacter saltans DSM 12145 JCM 21818T CP002545
Porphyromonas asaccharolytica DSM 20707 JCM 6326T CP002689
Porphyromonas crevioricanis JCM 13913 JCM 13913 BAOV00000000
Porphyromonas crevioricanis JCM 15906 JCM 15906T BAOU00000000
Porphyromonas endodontalis ATCC 35406 JCM 8526T ACNN00000000
Porphyromonas gingivalis ATCC 33277 JCM 12257T AP009380
Porphyromonas gingivalis TDC60 JCM 19600 AP012203
Prevotella bergensis DSM 17361 JCM 13869T ACKS00000000
Prevotella bivia JCVIHMP010 JCM 6331T ADFO00000000
Prevotella buccae ATCC 33574 JCM 12245T AEPD00000000
Prevotella buccalis ATCC 35310 JCM 12246T ADEG00000000
Prevotella copri DSM 18205 JCM 13464T ACBX00000000
Prevotella marshii DSM 16973 JCM 13450T AEEI00000000
Prevotella melaninogenica ATCC 25845 JCM 6325T ACSI00000000
Prevotella multiformis DSM 16608 JCM 12541T AEWX00000000
Prevotella multisaccharivorax DSM 17128 JCM 12954T AFJE00000000
Prevotella nigrescens ATCC 33563 JCM 12250T AFPX00000000
Prevotella oralis ATCC 33269 JCM 12251T AEPE00000000
Prevotella pallens ATCC 700821 JCM 11140T AFPY00000000
Prevotella salivae DSM 15606 JCM 12084T AEQO00000000
Sphingobacterium spiritivorum ATCC 33861 JCM 1277T
JCM 6897T
ACHA00000000
Weeksella virosa DSM 16922 JCM 21250T CP002455
Phylum Chlorobi
Ignavibacterium album JCM 16511 JCM 16511T CP003418
Melioribacter roseus P3M-2 JCM 17771T CP003557
Phylum Deinococcus-Thermus
Deinococcus proteolyticus MRP JCM 6276T CP002536
Marinithermus hydrothermalis DSM 14884 JCM 11576T CP002630
Thermus thermophilus HB8 JCM 10941T AP008226
Phylum Elusimicrobia
Elusimicrobium minutum Pei191 JCM 14958T CP001055
Phylum Firmicutes
Aerococcus viridans ATCC 11563 JCM 20461T ADNT00000000
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 JCM 5260T CP001727
Amphibacillus jilinensis Y1 JCM 16149T AMWI00000000
Anaerococcus hydrogenalis DSM 7454 JCM 7635T ABXA00000000
Anaerococcus lactolyticus ATCC 51172 JCM 8140T ABYO00000000
Anaerococcus prevotii DSM 20548 JCM 6508T CP001708
Anaerococcus tetradius ATCC 35098 JCM 1964T ACGC00000000
Anaerococcus vaginalis ATCC 51170 JCM 8138T ACXU00000000
Anaerostipes caccae DSM 14662 JCM 13470T ABAX00000000
Anaerotruncus colihominis DSM 17241 JCM 15631T ABGD00000000
Bacillus akibai JCM 9157 JCM 9157T BAUV00000000
Bacillus boroniphilus DSM 17376 JCM 21738T AWXY00000000
Bacillus cellulosilyticus DSM 2522 JCM 9156T CP002394
Bacillus cereus ATCC 14579 JCM 2152T AE016877
Bacillus halodurans C-125 JCM 9153 BA000004
Bacillus hemicellulosilyticus JCM 9152 JCM 9152T BAUU00000000
Bacillus licheniformis DSM 13 JCM 2505T AE017333
Bacillus macauensis ZFHKF-1 JCM 13285T AKKV00000000
Bacillus pseudofirmus OF4 JCM 17055 CP001878
Bacillus pseudomycoides DSM 12442 JCM 12231T CM000745
Bacillus subtilis subsp. spizizenii ATCC 6633 JCM 2499
JCM 20035
ADGS00000000
Bacillus subtilis subsp. spizizenii TU-B-10 JCM 12233T CP002905
Bacillus subtilis subsp. subtilis NCIB 3610 JCM 1465T ABQL00000000
Bacillus subtilis subsp. subtilis str. 168 JCM 10629 AL009126
Bacillus wakoensis JCM 9140 JCM 9140T BAUT00000000
Blautia hansenii DSM 20583 JCM 14655T ABYU00000000
Blautia hydrogenotrophica DSM 10507 JCM 14656T ACBZ00000000
Brevibacillus brevis NBRC 100599 JCM 6285 AP008955
Caldanaerobacter subterraneus subsp. tengcongensis MB4 JCM 11007T AE008691
“Caldicellulosiruptor obsidiansis” OB47 JCM 16842T CP002164
Caloramator australicus RC3 JCM 15081T CAKP00000000
Catenibacterium mitsuokai DSM 15897 JCM 10609T ACCK00000000
Clostridium acetobutylicum ATCC 824 JCM 1419T AE001437
Clostridium acetobutylicum DSM 1731 JCM 7829 CP002660
Clostridium hiranonis DSM 13275 JCM 10541T ABWP00000000
Clostridium hylemonae DSM 15053 JCM 10539T ABYI00000000
Clostridium ramosum DSM 1402 JCM 1298T ABFX00000000
Clostridium scindens ATCC 35704 JCM 6567T ABFY00000000
Clostridium spiroforme DSM 1552 JCM 1432T ABIK00000000
Clostridium sticklandii DSM 519 JCM 1433T FP565809
Clostridium straminisolvens JCM 21531 JCM 21531T BAVR00000000
Clostridium thermocellum ATCC 27405 JCM 9322T CP000568
Clostridium thermocellum DSM 2360 JCM 9323 ACVX00000000
Dialister invisus DSM 15470 JCM 17566T ACIM00000000
Dialister micraerophilus DSM 19965 JCM 17567T AFBB00000000
Ethanoligenens harbinense YUAN-3 JCM 12961T CP002400
Eubacterium rectale ATCC 33656 JCM 17463 CP001107
Eubacterium saburreum DSM 3986 JCM 11021T AEPW00000000
Exiguobacterium sibiricum 255-15 JCM 13490T CP001022
Geobacillus kaustophilus HTA426 JCM 12893 BA000043
Geobacillus sp. JF8 JCM 19604 CP006254
Kurthia huakuii LAM0618 JCM 19187T AYTB00000000
Lachnoanaerobaculum saburreum DSM 3986 JCM 11021T AEPW00000000
Lactobacillus amylolyticus DSM 11664 JCM 12529T ADNY00000000
Lactobacillus antri DSM 16041 JCM 15950T ACLL00000000
Lactobacillus brevis ATCC 367 JCM 1170 CP000416
Lactobacillus composti JCM 14202 JCM 14202T BAMK00000000
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 JCM 1002T CR954253
Lactobacillus farraginis JCM 14108 JCM 14108T BAKI00000000
Lactobacillus fermentum ATCC 14931 JCM 1173T ACGI00000000
Lactobacillus gasseri ATCC 33323 JCM 1131T CP000413
Lactobacillus helveticus DSM 20075 JCM 1120T ACLM00000000
Lactobacillus hilgardii ATCC 8290 JCM 1155T ACGP00000000
Lactobacillus johnsonii ATCC 33200 JCM 2012T ACGR00000000
Lactobacillus paracasei subsp. paracasei ATCC 25302 JCM 8130T ACGY00000000
Lactobacillus plantarum subsp. plantarum ATCC 14917 JCM 1149T ACGZ00000000
Lactobacillus reuteri JCM 1112 JCM 1112T AP007281
Lactobacillus salivarius ATCC 11741 JCM 1231T ACGT00000000
Lactobacillus sp. (“L. brevis subsp. gravesensis”) ATCC 27305 JCM 1102 ACGG00000000
Lactobacillus ultunensis DSM 16047 JCM 16177T ACGU00000000
Lactobacillus vaginalis ATCC 49540 JCM 9505T ACGV00000000
Lactococcus lactis subsp. lactis IO-1 JCM 7638 AP012281
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 JCM 16943T ACKV00000000
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 JCM 6124T CP000414
Mitsuokella multacida DSM 20544 JCM 2054T ABWK00000000
Moorella thermoacetica ATCC 39073 JCM 9320 CP000232
Oceanobacillus iheyensis HTE831 JCM 11309T BA000028
Ornithinibacillus scapharcae TW25 JCM 17314T AEWH00000000
Oscillibacter ruminantium GH1 JCM 18333T BAGW00000000
Paenibacillus alvei DSM 29 JCM 20131T AMBZ00000000
Paenibacillus curdlanolyticus YK9 JCM 12163T AEDD00000000
Paenibacillus daejeonensis DSM 15491 JCM 11236T ARKE00000000
Paenibacillus polymyxa ATCC 842 JCM 2507T AFOX00000000
Paenibacillus sp. JCM 10914 JCM 10914 BAUO00000000
Parvimonas micra ATCC 33270 JCM 12970T ABEE00000000
Peptostreptococcus stomatis DSM 17678 JCM 15636T ADGQ00000000
Pseudoramibacter alactolyticus ATCC 23263 JCM 6480T AEQN00000000
Ruminococcus albus 7 JCM 14654T CP002403
Ruminococcus torques ATCC 27756 JCM 6553T AAVP00000000
Salinicoccus carnicancri Crm JCM 15796T ANAM00000000
Selenomonas flueggei ATCC 43531 JCM 8544T ACLA00000000
Selenomonas noxia ATCC 43541 JCM 8546T ACKT00000000
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 JCM 2427T AP008934
Staphylococcus warneri L37603 JCM 2415T ACPZ00000000
Streptococcus oralis ATCC 35037 JCM 12997T ADMV00000000
Symbiobacterium thermophilum IAM 14863 JCM 14929T AP006840
Terrisporobacter glycolicus DSM 1288 JCM 1401T AUUB00000000
Thermaerobacter marianensis DSM 12885 JCM 10246T CP002344
Veillonella parvula DSM 2008 JCM 12972T CP001820
Weissella paramesenteroides ATCC 33313 JCM 9890T ACKU00000000
Phylum Fusobacteria
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 JCM 8532T AE009951
Fusobacterium nucleatum subsp. polymorphum ATCC 10953 JCM 12990T AARG00000000
Fusobacterium nucleatum subsp. vincentii ATCC 49256 JCM 11023T AABF00000000
Fusobacterium periodonticum ATCC 33693 JCM 12991T ACJY00000000
Leptotrichia buccalis DSM 1135 JCM 12969T CP001685
Phylum Gemmatimonadetes
Gemmatimonas aurantiaca T-27 JCM 11422T AP009153
Phylum Proteobacteria (alpha)
Acidiphilium multivorum AIU301 JCM 8867T AP012035
Bradyrhizobium diazoefficiens
(Bradyrhizobium japonicum)
USDA 110 JCM 10833T BA000040
Magnetococcus marinus MC-1 JCM 17883T CP000471
Mesorhizobium loti MAFF303099 JCM 21590 BA000012
Methylobacterium extorquens AM1 JCM 2805 CP001510
Methylobacterium radiotolerans JCM 2831 JCM 2831T CP001001
Phaeobacter arcticus DSM 23566 JCM 14644T KI421507
Phaeobacter daeponensis DSM 23529 JCM 13606T KI421500
Rhizobium radiobacter
(Agrobacterium radiobacter)
DSM 30147 JCM 20371T ASXY00000000
Roseobacter denitrificans OCh 114 JCM 21267T CP000362
Ruegeria conchae TW15 JCM 17315T AEYW00000000
Sphingomonas haloaromaticamans MM-1 JCM 19685 CP004036
Starkeya novella DSM 506 JCM 20403T CP002026
Phylum Proteobacteria (beta)
Burkholderia sp. SJ98 JCM 16861 AJHK00000000
Chromobacterium violaceum ATCC 12472 JCM 1249T AE016825
Eikenella corrodens ATCC 23834 JCM 12952T ACEA00000000
Methylotenera versatilis 301 JCM 17579T CP002056
Phylum Proteobacteria (delta)
Desulfohalobium retbaense DSM 5692 JCM 16813T CP001734
Geobacter daltonii FRC-32 JCM 15807T CP001390
Haliangium ochraceum DSM 14365 JCM 11303T CP001804
Syntrophus aciditrophicus SB JCM 18717T CP000252
Phylum Proteobacteria (epsilon)
Caminibacter mediatlanticus TB-2 JCM 12641T ABCJ00000000
Campylobacter gracilis RM 3268 JCM 8538T ACYG00000000
Campylobacter rectus RM3267 JCM 6301T ACFU00000000
Campylobacter showae RM3277 JCM 12989T ACVQ00000000
Nitratifractor salsuginis DSM 16511 JCM 12458T CP002452
Sulfuricurvum kujiense DSM 16994 JCM 11577T CP002355
Phylum Proteobacteria (gamma)
Acidithiobacillus thiooxidans ATCC 19377 JCM 3867T AFOH00000000
Acinetobacter baumannii ATCC 19606 JCM 6841T ACQB00000000
“Acinetobacter oleivorans” DR1 JCM 16667T CP002080
Aeromonas hydrophila subsp. hydrophila ATCC 7966 JCM 1027T CP000462
Agarivorans albus MKT 106 JCM 21469T BARX00000000
Alishewanella agri BL06 JCM 15597T AKKU00000000
Alishewanella jeotgali KCTC 22429 JCM 15561T AHTH00000000
Citrobacter freundii MTCC 1658 JCM 1657T ANAV00000000
Escherichia coli SE11 JCM 16574 AP009240
Escherichia coli SE15 JCM 16575 AP009378
Glaciecola nitratireducens FR1064 JCM 12485T CP003060
Halomonas elongata DSM 2581 JCM 21044T FN869568
Kangiella koreensis DSM 16069 JCM 12317T CP001707
Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 JCM 1664T ACZD00000000
Legionella pneumophila subsp. pneumophila Philadelphia 1 JCM 7571T AE017354
Luminiphilus syltensis NOR5-1B JCM 17770T ACCY00000000
Marinomonas mediterranea MMB-1 JCM 21426T CP002583
Methylophaga aminisulfidivorans MP JCM 14647T AFIG00000000
Proteus mirabilis ATCC 29906 JCM 1669T ACLE00000000
Providencia alcalifaciens DSM 30120 JCM 1673T ABXW00000000
Providencia rustigianii DSM 4541 JCM 3953T ABXV00000000
Pseudomonas aeruginosa PAO1 JCM 14847 AE004091
Pseudomonas aeruginosa MTB-1 JCM 19686 CP006853
Pseudomonas sp. TKP JCM 19688 CP006852
Salinisphaera shabanensis E1L3A JCM 11575T AFNV00000000
Serratia odorifera DSM 4582 JCM 1243T ADBY00000000
“Thiolapillus brandeum” Hiromi 1 JCM 15507T AP012273
Phylum Spirochaetes
Treponema denticola ATCC 35405 JCM 8153T AE017226
Phylum Synergistetes
Anaerobaculum mobile DSM 13181 JCM 12221T CP003198
Dethiosulfovibrio peptidovorans DSM 11002 JCM 15826T ABTR00000000
Pyramidobacter piscolens W5455 JCM 16336T ADFP00000000
Phylum Thermodesulfobacteria
Thermodesulfatator indicus DSM 15286 JCM 11887T CP002683
Phylum Thermotogae
Thermotoga maritima MSB8 JCM 10099T AE000512
Phylum Verrucomicrobia
Coraliomargarita akajimensis DSM 45221 JCM 23193T CP001998
Unclassified phylum
Haloplasma contractile SSD-17B JCM 14575T AFNU00000000

 

Domain Eukaryota

Scientific name Sequenced strain JCM accession no. Database accession no.
Phylum Ascomycota
Acremonium alcalophilum JCM 7366 JCM 7366 Genome Project ID: 33785
Aspergillus flavus NRRL3357 JCM 12722 Genome Project ID: 13284
Aspergillus niger ATCC 1015 JCM 22282 Genome Project ID: 15785
Aspergillus oryzae RIB40 JCM 13832 Genome Project ID: 20809
Candida glabrata CBS 138 JCM 3761T Genome Project ID: 13831
Chaetomium globosum CBS 148.51 JCM 22615 Genome Project ID: 12795
Debaryomyces hansenii CBS 767 JCM 1990T Genome Project ID: 13832
Kluyveromyces lactis NRRL Y-1140 JCM 22014 Genome Project ID: 13835
Saitoella complicata NRRL Y-17804 JCM 7358T Genome Project ID: 63243
Trichoderma reesei QM6a JCM 22676 Genome Project ID: 15571
Phylum Basidiomycota
Mixia osmundae IAM 14324 JCM 22182 Genome Project ID: 48573